Wall clock time and date at job start Mon Mar 30 2020 02:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00404 * 2 1 4 4 H 1.48498 * 109.47630 * 270.00359 * 3 2 1 5 5 H 1.48501 * 109.47003 * 30.00516 * 3 2 1 6 6 H 1.48501 * 109.46931 * 150.00138 * 3 2 1 7 7 C 1.37881 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99733 * 184.82994 * 7 2 1 9 9 C 1.50697 * 119.99745 * 4.82427 * 7 2 1 10 10 C 1.53000 * 109.68267 * 55.01000 * 9 7 2 11 11 N 1.46906 * 109.47018 * 64.42420 * 10 9 7 12 12 C 1.53355 * 109.69239 * 175.56503 * 9 7 2 13 13 C 1.53114 * 109.51207 * 69.77191 * 12 9 7 14 14 C 1.53362 * 109.50366 * 70.28613 * 13 12 9 15 15 C 1.50834 * 108.38128 * 310.06809 * 14 13 12 16 16 N 1.34321 * 128.03115 * 196.55251 * 15 14 13 17 17 H 0.97000 * 126.09703 * 359.86864 * 16 15 14 18 18 N 1.40302 * 107.81513 * 179.87923 * 16 15 14 19 19 C 1.31070 * 108.26732 * 0.06638 * 18 16 15 20 20 C 1.35746 * 124.12031 * 16.52924 * 15 14 13 21 21 H 0.97001 * 119.99374 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47755 * 184.42238 * 10 9 7 23 23 H 1.08994 * 109.47350 * 304.43035 * 10 9 7 24 24 H 1.00899 * 111.00263 * 174.96455 * 11 10 9 25 25 H 1.00897 * 111.00450 * 298.92407 * 11 10 9 26 26 H 1.08996 * 109.45518 * 309.76631 * 12 9 7 27 27 H 1.08994 * 109.47651 * 189.79011 * 12 9 7 28 28 H 1.08999 * 109.46601 * 310.27796 * 13 12 9 29 29 H 1.09004 * 109.46331 * 190.29556 * 13 12 9 30 30 H 1.09003 * 109.68075 * 69.78388 * 14 13 12 31 31 H 1.08995 * 109.68934 * 190.30461 * 14 13 12 32 32 H 1.08002 * 125.95738 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4399 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0815 -1.1958 0.0782 9 6 1.2549 -2.4968 -0.1109 10 6 0.3704 -2.4782 -1.3592 11 7 1.2165 -2.4031 -2.5577 12 6 2.2503 -3.6599 -0.1998 13 6 2.9541 -3.8350 1.1488 14 6 1.9589 -4.3848 2.1781 15 6 0.7115 -3.5379 2.1331 16 7 -0.2713 -3.4632 3.0456 17 1 -0.3160 -3.9573 3.8792 18 7 -1.2219 -2.5433 2.5782 19 6 -0.8155 -2.0855 1.4193 20 6 0.3991 -2.6960 1.1152 21 1 -0.4849 0.8401 0.0004 22 1 -0.2286 -3.3882 -1.3938 23 1 -0.2885 -1.6106 -1.3248 24 1 0.6612 -2.4720 -3.3973 25 1 1.7691 -1.5589 -2.5580 26 1 2.9906 -3.4461 -0.9707 27 1 1.7170 -4.5762 -0.4527 28 1 3.3328 -2.8711 1.4886 29 1 3.7842 -4.5326 1.0374 30 1 1.7105 -5.4175 1.9332 31 1 2.3984 -4.3393 3.1744 32 1 -1.3323 -1.3614 0.8069 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260984743.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:08 Heat of formation + Delta-G solvation = 66.637708 kcal Electronic energy + Delta-G solvation = -15937.820534 eV Core-core repulsion = 13513.368142 eV Total energy + Delta-G solvation = -2424.452392 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.31078 -36.46953 -33.76249 -31.82309 -30.60228 -28.45137 -28.03548 -24.93101 -23.70323 -21.31676 -20.11566 -19.95368 -17.95011 -16.37540 -15.48063 -14.66952 -14.41311 -14.16467 -13.44440 -13.04075 -12.92548 -12.82149 -12.18403 -11.85233 -11.41243 -11.31544 -11.12733 -10.85550 -10.58128 -10.19205 -10.14343 -9.85169 -9.45720 -8.98239 -8.90557 -8.48073 -8.20372 -7.40207 -6.92503 -5.94436 -4.05079 3.01266 3.28275 3.36694 3.39181 3.94824 4.28297 4.43298 5.27664 5.53703 5.70612 5.76684 5.91778 6.13124 6.32000 6.37607 6.52698 6.60787 6.79728 6.88200 7.01434 7.14067 7.22441 7.34114 7.44122 7.67949 7.87237 8.01807 8.14149 8.40174 8.43638 8.50383 8.65794 8.92288 9.02203 9.57671 11.00725 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024611 B = 0.014081 C = 0.012312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.441802 B = 1988.024753 C = 2273.610266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.483 4.483 8 H 0.057 0.943 9 C 0.141 3.859 10 C 0.070 3.930 11 N -0.848 5.848 12 C -0.089 4.089 13 C -0.111 4.111 14 C -0.043 4.043 15 C 0.032 3.968 16 N -0.500 5.500 17 H 0.419 0.581 18 N -0.348 5.348 19 C 0.094 3.906 20 C -0.154 4.154 21 H 0.259 0.741 22 H 0.023 0.977 23 H 0.068 0.932 24 H 0.312 0.688 25 H 0.342 0.658 26 H 0.062 0.938 27 H 0.034 0.966 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.041 -5.475 0.666 5.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.522 4.522 8 H 0.076 0.924 9 C 0.139 3.861 10 C -0.060 4.060 11 N -0.376 5.376 12 C -0.127 4.127 13 C -0.149 4.149 14 C -0.082 4.082 15 C -0.095 4.095 16 N -0.207 5.207 17 H 0.259 0.741 18 N -0.171 5.171 19 C -0.091 4.091 20 C -0.166 4.166 21 H 0.069 0.931 22 H 0.042 0.958 23 H 0.086 0.914 24 H 0.121 0.879 25 H 0.155 0.845 26 H 0.081 0.919 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.321 -5.926 1.807 6.335 hybrid contribution 0.491 1.642 -0.112 1.718 sum 1.811 -4.284 1.695 4.951 Atomic orbital electron populations 1.69617 1.05807 1.25858 1.51271 1.24893 0.94757 0.98789 0.95255 0.86632 0.79882 0.83778 0.77896 1.20846 1.21561 1.20195 1.21122 0.92922 0.89765 1.48366 0.92440 1.16678 0.89777 0.92580 0.87070 1.21825 0.95088 0.99065 0.90057 1.58807 1.28927 1.46122 1.03703 1.21456 0.98683 0.97861 0.94663 1.21564 0.96281 1.00785 0.96286 1.20138 0.91614 0.96838 0.99587 1.20760 0.93186 1.02620 0.92904 1.45797 1.18089 1.37635 1.19195 0.74088 1.77339 1.14262 1.09468 1.16025 1.24453 0.95770 0.96482 0.92364 1.20358 0.97308 0.99131 0.99808 0.93082 0.95811 0.91414 0.87905 0.84498 0.91910 0.94704 0.90949 0.93338 0.91753 0.92286 0.78202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.50 7.40 55.43 0.41 -22.09 16 2 C 0.06 1.59 5.13 -17.82 -0.09 1.50 16 3 Si 0.89 20.33 29.54 -169.99 -5.02 15.30 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.48 -12.01 6.40 -34.44 -0.22 -12.23 16 8 H 0.06 1.46 7.33 -52.49 -0.38 1.07 16 9 C 0.14 3.23 0.34 -156.56 -0.05 3.17 16 10 C 0.07 1.57 5.22 -3.82 -0.02 1.55 16 11 N -0.85 -16.91 8.88 -10.37 -0.09 -17.00 16 12 C -0.09 -1.82 4.23 -26.49 -0.11 -1.93 16 13 C -0.11 -2.03 5.86 -26.48 -0.16 -2.18 16 14 C -0.04 -0.73 6.30 -27.63 -0.17 -0.90 16 15 C 0.03 0.67 7.08 -82.33 -0.58 0.09 16 16 N -0.50 -10.03 7.34 33.48 0.25 -9.79 16 17 H 0.42 6.72 8.96 -182.44 -1.64 5.08 16 18 N -0.35 -8.06 12.71 30.54 0.39 -7.67 16 19 C 0.09 2.28 10.02 -17.48 -0.18 2.11 16 20 C -0.15 -3.63 4.52 -105.05 -0.47 -4.10 16 21 H 0.26 6.46 8.31 -40.82 -0.34 6.12 16 22 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.07 1.66 5.64 -51.93 -0.29 1.36 16 24 H 0.31 5.47 9.08 -39.29 -0.36 5.11 16 25 H 0.34 7.13 8.20 -39.29 -0.32 6.81 16 26 H 0.06 1.30 7.85 -51.93 -0.41 0.90 16 27 H 0.03 0.70 8.09 -51.93 -0.42 0.28 16 28 H 0.07 1.46 7.04 -51.93 -0.37 1.09 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.20 5.04 6.00 -52.49 -0.31 4.72 16 LS Contribution 251.36 15.07 3.79 3.79 Total: -1.00 -27.08 251.36 -7.67 -34.75 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -5.33 Total: 15.64 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -2.06 Total: -12.93 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.95 Total: -56.55 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -27.08 -7.67 -34.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260984743.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.388 kcal (2) G-P(sol) polarization free energy of solvation -27.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds