Wall clock time and date at job start Mon Mar 30 2020 02:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00404 * 2 1 4 4 H 1.48498 * 109.47630 * 270.00359 * 3 2 1 5 5 H 1.48501 * 109.47003 * 30.00516 * 3 2 1 6 6 H 1.48501 * 109.46931 * 150.00138 * 3 2 1 7 7 C 1.37881 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99733 * 184.82994 * 7 2 1 9 9 C 1.50697 * 119.99745 * 4.82427 * 7 2 1 10 10 C 1.53000 * 109.68267 * 55.01000 * 9 7 2 11 11 N 1.46906 * 109.47018 * 64.42420 * 10 9 7 12 12 C 1.53355 * 109.69239 * 175.56503 * 9 7 2 13 13 C 1.53114 * 109.51207 * 69.77191 * 12 9 7 14 14 C 1.53362 * 109.50366 * 70.28613 * 13 12 9 15 15 C 1.50834 * 108.38128 * 310.06809 * 14 13 12 16 16 N 1.34321 * 128.03115 * 196.55251 * 15 14 13 17 17 H 0.97000 * 126.09703 * 359.86864 * 16 15 14 18 18 N 1.40302 * 107.81513 * 179.87923 * 16 15 14 19 19 C 1.31070 * 108.26732 * 0.06638 * 18 16 15 20 20 C 1.35746 * 124.12031 * 16.52924 * 15 14 13 21 21 H 0.97001 * 119.99374 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47755 * 184.42238 * 10 9 7 23 23 H 1.08994 * 109.47350 * 304.43035 * 10 9 7 24 24 H 1.00899 * 111.00263 * 174.96455 * 11 10 9 25 25 H 1.00897 * 111.00450 * 298.92407 * 11 10 9 26 26 H 1.08996 * 109.45518 * 309.76631 * 12 9 7 27 27 H 1.08994 * 109.47651 * 189.79011 * 12 9 7 28 28 H 1.08999 * 109.46601 * 310.27796 * 13 12 9 29 29 H 1.09004 * 109.46331 * 190.29556 * 13 12 9 30 30 H 1.09003 * 109.68075 * 69.78388 * 14 13 12 31 31 H 1.08995 * 109.68934 * 190.30461 * 14 13 12 32 32 H 1.08002 * 125.95738 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4399 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0815 -1.1958 0.0782 9 6 1.2549 -2.4968 -0.1109 10 6 0.3704 -2.4782 -1.3592 11 7 1.2165 -2.4031 -2.5577 12 6 2.2503 -3.6599 -0.1998 13 6 2.9541 -3.8350 1.1488 14 6 1.9589 -4.3848 2.1781 15 6 0.7115 -3.5379 2.1331 16 7 -0.2713 -3.4632 3.0456 17 1 -0.3160 -3.9573 3.8792 18 7 -1.2219 -2.5433 2.5782 19 6 -0.8155 -2.0855 1.4193 20 6 0.3991 -2.6960 1.1152 21 1 -0.4849 0.8401 0.0004 22 1 -0.2286 -3.3882 -1.3938 23 1 -0.2885 -1.6106 -1.3248 24 1 0.6612 -2.4720 -3.3973 25 1 1.7691 -1.5589 -2.5580 26 1 2.9906 -3.4461 -0.9707 27 1 1.7170 -4.5762 -0.4527 28 1 3.3328 -2.8711 1.4886 29 1 3.7842 -4.5326 1.0374 30 1 1.7105 -5.4175 1.9332 31 1 2.3984 -4.3393 3.1744 32 1 -1.3323 -1.3614 0.8069 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260984743.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:07 Heat of formation + Delta-G solvation = 48.002701 kcal Electronic energy + Delta-G solvation = -15938.628609 eV Core-core repulsion = 13513.368142 eV Total energy + Delta-G solvation = -2425.260467 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.99874 -38.15899 -35.37210 -33.64359 -32.32077 -30.11347 -29.68379 -26.76381 -25.36602 -22.90680 -21.84370 -21.67646 -19.69783 -17.99146 -17.30229 -16.50770 -16.07491 -15.72943 -15.19706 -14.69304 -14.62560 -14.42879 -13.81063 -13.47399 -13.05578 -13.00111 -12.95099 -12.63927 -12.38624 -11.94467 -11.76094 -11.41453 -11.15608 -10.71550 -10.62382 -10.35575 -9.92329 -9.10674 -8.65161 -7.82806 -5.98791 1.31912 1.45257 1.49606 1.54492 2.38449 2.47263 2.57070 3.35370 4.07089 4.24478 4.29379 4.37997 4.57831 4.79996 4.90375 5.01089 5.07046 5.15249 5.23986 5.37780 5.47703 5.61776 5.63213 5.68712 5.94243 6.06389 6.20732 6.35071 6.59838 6.76652 6.88504 6.96856 7.13972 7.26666 7.64435 9.07735 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024611 B = 0.014081 C = 0.012312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.441802 B = 1988.024753 C = 2273.610266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.028 3.972 3 Si 0.935 3.065 4 H -0.277 1.277 5 H -0.299 1.299 6 H -0.280 1.280 7 C -0.487 4.487 8 H 0.048 0.952 9 C 0.136 3.864 10 C 0.079 3.921 11 N -0.839 5.839 12 C -0.085 4.085 13 C -0.108 4.108 14 C -0.039 4.039 15 C 0.044 3.956 16 N -0.482 5.482 17 H 0.438 0.562 18 N -0.368 5.368 19 C 0.075 3.925 20 C -0.191 4.191 21 H 0.253 0.747 22 H 0.019 0.981 23 H 0.043 0.957 24 H 0.326 0.674 25 H 0.338 0.662 26 H 0.055 0.945 27 H 0.037 0.963 28 H 0.049 0.951 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.299 -6.968 1.330 7.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.171 4.171 3 Si 0.763 3.237 4 H -0.203 1.203 5 H -0.226 1.226 6 H -0.205 1.205 7 C -0.525 4.525 8 H 0.066 0.934 9 C 0.134 3.866 10 C -0.053 4.053 11 N -0.367 5.367 12 C -0.122 4.122 13 C -0.146 4.146 14 C -0.078 4.078 15 C -0.085 4.085 16 N -0.192 5.192 17 H 0.283 0.717 18 N -0.192 5.192 19 C -0.109 4.109 20 C -0.202 4.202 21 H 0.063 0.937 22 H 0.037 0.963 23 H 0.061 0.939 24 H 0.137 0.863 25 H 0.150 0.850 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.571 -7.431 2.471 8.242 hybrid contribution 0.089 2.061 -0.299 2.084 sum 2.660 -5.370 2.172 6.374 Atomic orbital electron populations 1.69774 1.06329 1.25646 1.51731 1.25376 0.95311 1.00716 0.95687 0.85931 0.78610 0.81330 0.77790 1.20260 1.22627 1.20481 1.21257 0.92503 0.90882 1.47868 0.93373 1.16702 0.90152 0.92716 0.87030 1.21639 0.94929 0.97611 0.91074 1.58754 1.28632 1.45634 1.03699 1.21370 0.98000 0.96803 0.96072 1.21522 0.97344 1.00683 0.95019 1.20306 0.89342 0.97250 1.00926 1.21341 0.93887 1.01599 0.91655 1.45790 1.17142 1.36572 1.19701 0.71741 1.77251 1.15475 1.10627 1.15871 1.24264 0.96639 0.97046 0.92916 1.20535 0.97637 1.00873 1.01182 0.93680 0.96252 0.93911 0.86326 0.84984 0.92661 0.94394 0.93246 0.89862 0.88908 0.89333 0.80008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.44 7.40 21.45 0.16 -46.28 16 2 C 0.03 1.40 5.13 84.66 0.43 1.83 16 3 Si 0.93 41.98 29.54 68.60 2.03 44.00 16 4 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.49 -24.13 6.40 25.60 0.16 -23.97 16 8 H 0.05 2.43 7.33 -2.91 -0.02 2.41 16 9 C 0.14 6.15 0.34 -53.51 -0.02 6.13 16 10 C 0.08 3.53 5.22 86.30 0.45 3.98 16 11 N -0.84 -33.02 8.88 -186.71 -1.66 -34.67 16 12 C -0.08 -3.30 4.23 30.75 0.13 -3.17 16 13 C -0.11 -3.57 5.86 30.75 0.18 -3.39 16 14 C -0.04 -1.18 6.30 30.01 0.19 -0.99 16 15 C 0.04 1.73 7.08 41.64 0.29 2.02 16 16 N -0.48 -18.31 7.34 -47.98 -0.35 -18.66 16 17 H 0.44 12.71 8.96 -213.19 -1.91 10.80 16 18 N -0.37 -16.88 12.71 -57.28 -0.73 -17.61 16 19 C 0.07 3.68 10.02 85.06 0.85 4.53 16 20 C -0.19 -8.84 4.52 -20.14 -0.09 -8.93 16 21 H 0.25 13.00 8.31 -92.71 -0.77 12.23 16 22 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.04 2.14 5.64 -2.39 -0.01 2.13 16 24 H 0.33 11.19 9.08 -89.69 -0.81 10.37 16 25 H 0.34 13.97 8.20 -89.70 -0.74 13.23 16 26 H 0.05 2.20 7.85 -2.39 -0.02 2.18 16 27 H 0.04 1.43 8.09 -2.39 -0.02 1.41 16 28 H 0.05 1.87 7.04 -2.39 -0.02 1.86 16 29 H 0.08 2.20 8.14 -2.38 -0.02 2.19 16 30 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.18 9.53 6.00 -2.91 -0.02 9.52 16 Total: -1.00 -57.61 251.36 -0.26 -57.87 By element: Atomic # 1 Polarization: 39.60 SS G_CDS: -2.30 Total: 37.30 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: 2.59 Total: -21.95 kcal Atomic # 7 Polarization: -114.65 SS G_CDS: -2.58 Total: -117.23 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Total: -57.61 -0.26 -57.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260984743.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.877 kcal (2) G-P(sol) polarization free energy of solvation -57.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds