Wall clock time and date at job start Mon Mar 30 2020 03:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99729 * 2 1 4 4 H 1.48502 * 109.46797 * 269.99268 * 3 2 1 5 5 H 1.48497 * 109.47438 * 29.99515 * 3 2 1 6 6 H 1.48504 * 109.46866 * 149.99542 * 3 2 1 7 7 C 1.37871 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99837 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00135 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47307 * 179.97438 * 9 7 2 11 11 H 1.09008 * 110.66879 * 56.78536 * 10 9 7 12 12 C 1.54882 * 110.75932 * 293.55033 * 10 9 7 13 13 C 1.54268 * 104.19903 * 203.55796 * 12 10 9 14 14 C 1.53875 * 106.59613 * 23.60738 * 13 12 10 15 15 H 1.08987 * 110.03445 * 119.33670 * 14 13 12 16 16 N 1.46508 * 110.03098 * 240.72011 * 14 13 12 17 17 C 1.35316 * 125.86875 * 32.92226 * 16 14 13 18 18 C 1.35352 * 106.17299 * 179.97438 * 17 16 14 19 19 N 1.33774 * 106.49549 * 359.97438 * 18 17 16 20 20 N 1.28626 * 108.88702 * 0.02562 * 19 18 17 21 21 C 1.54274 * 106.64119 * 0.02562 * 14 13 12 22 22 H 0.96996 * 120.00547 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.46987 * 59.99893 * 9 7 2 24 24 H 1.08993 * 109.47106 * 299.99493 * 9 7 2 25 25 H 1.09003 * 110.48668 * 84.87453 * 12 10 9 26 26 H 1.09002 * 110.48752 * 322.23479 * 12 10 9 27 27 H 1.09000 * 110.02460 * 264.32525 * 13 12 10 28 28 H 1.08993 * 110.07485 * 142.91401 * 13 12 10 29 29 H 1.07994 * 126.90970 * 359.96732 * 17 16 14 30 30 H 1.08000 * 126.74897 * 180.26271 * 18 17 16 31 31 H 1.08997 * 110.48207 * 95.04212 * 21 14 13 32 32 H 1.09002 * 110.48566 * 217.69299 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9200 -3.5914 0.8538 12 6 3.0419 -3.7033 -1.3271 13 6 3.5055 -5.1699 -1.4449 14 6 2.5282 -6.0087 -0.6027 15 1 2.0200 -6.7364 -1.2351 16 7 3.2520 -6.6954 0.4701 17 6 4.3412 -6.2238 1.1199 18 6 4.6803 -7.1716 2.0247 19 7 3.7932 -8.1634 1.8863 20 7 2.9606 -7.8507 0.9572 21 6 1.5040 -5.0234 -0.0026 22 1 -0.4851 0.8400 -0.0004 23 1 0.6247 -2.5570 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 3.9011 -3.0344 -1.2774 26 1 2.3988 -3.4380 -2.1663 27 1 4.5182 -5.2737 -1.0554 28 1 3.4714 -5.4906 -2.4860 29 1 4.8397 -5.2808 0.9506 30 1 5.5022 -7.1326 2.7243 31 1 0.6129 -4.9715 -0.6282 32 1 1.2414 -5.3179 1.0135 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260990963.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:22 Heat of formation + Delta-G solvation = 78.061155 kcal Electronic energy + Delta-G solvation = -14878.069553 eV Core-core repulsion = 12454.112518 eV Total energy + Delta-G solvation = -2423.957034 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.11407 -38.32745 -33.94268 -32.55227 -30.91673 -29.94239 -28.39956 -26.05985 -22.90285 -22.69090 -22.13665 -19.98293 -19.25637 -17.42522 -16.45463 -16.00236 -15.10347 -14.74995 -14.55204 -14.13826 -13.57315 -13.22715 -12.32642 -11.99643 -11.91994 -11.58004 -11.46332 -11.16266 -10.91085 -10.75083 -10.69483 -10.56669 -10.34689 -9.96867 -9.83946 -9.31701 -9.22286 -9.06599 -8.42925 -6.07366 -4.10101 1.78777 2.52924 2.72310 3.26038 3.33394 3.35372 4.35366 4.41430 4.67094 4.69661 4.92508 5.16682 5.28500 5.35849 5.42209 5.53634 5.64956 5.67717 5.81464 5.99905 6.06540 6.22976 6.25426 6.30216 6.65006 6.78145 6.82286 6.94780 7.56021 7.68957 7.90654 8.32528 8.67402 8.96129 9.54527 11.03862 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.047765 B = 0.006212 C = 0.006082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.064597 B = 4506.007647 C = 4602.346072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.030 3.970 10 C -0.082 4.082 11 H 0.063 0.937 12 C -0.106 4.106 13 C -0.137 4.137 14 C 0.134 3.866 15 H 0.109 0.891 16 N -0.273 5.273 17 C -0.040 4.040 18 C -0.062 4.062 19 N -0.282 5.282 20 N -0.095 5.095 21 C -0.130 4.130 22 H 0.261 0.739 23 H 0.019 0.981 24 H 0.016 0.984 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.188 0.812 30 H 0.186 0.814 31 H 0.089 0.911 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.614 -9.111 -1.866 12.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.007 4.007 10 C -0.101 4.101 11 H 0.081 0.919 12 C -0.144 4.144 13 C -0.176 4.176 14 C 0.033 3.967 15 H 0.127 0.873 16 N -0.067 5.067 17 C -0.192 4.192 18 C -0.220 4.220 19 N -0.148 5.148 20 N -0.074 5.074 21 C -0.169 4.169 22 H 0.071 0.929 23 H 0.037 0.963 24 H 0.035 0.965 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.205 0.795 30 H 0.203 0.797 31 H 0.108 0.892 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.476 -10.215 -1.951 12.251 hybrid contribution 1.140 2.028 0.017 2.327 sum 7.615 -8.186 -1.934 11.347 Atomic orbital electron populations 1.69949 1.06070 1.26688 1.50693 1.25014 0.94810 0.99248 0.95325 0.86629 0.79862 0.83623 0.78097 1.20669 1.21240 1.19906 1.21177 0.92934 0.90830 1.50695 0.92651 1.19085 0.93404 0.90814 0.97387 1.22284 0.97739 0.93856 0.96196 0.91877 1.22340 1.00490 0.92274 0.99294 1.22715 0.98203 0.97160 0.99474 1.22622 0.93672 0.94861 0.85543 0.87297 1.47794 1.19799 1.13073 1.26028 1.23613 0.93592 1.03381 0.98622 1.23552 1.03011 0.92312 1.03085 1.75046 1.03237 1.24789 1.11718 1.78237 1.21186 0.99002 1.08998 1.22974 0.97478 0.95142 1.01257 0.92943 0.96261 0.96543 0.91014 0.90841 0.90806 0.90271 0.79489 0.79689 0.89217 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.29 55.43 0.74 -25.25 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 7 C -0.52 -13.63 8.68 -34.44 -0.30 -13.93 16 8 H 0.06 1.40 7.64 -52.48 -0.40 1.00 16 9 C 0.03 0.71 4.50 -27.88 -0.13 0.59 16 10 C -0.08 -1.47 2.87 -88.56 -0.25 -1.73 16 11 H 0.06 1.16 8.14 -51.92 -0.42 0.73 16 12 C -0.11 -1.62 5.79 -25.08 -0.15 -1.77 16 13 C -0.14 -1.64 6.32 -25.61 -0.16 -1.80 16 14 C 0.13 1.76 3.93 -66.80 -0.26 1.50 16 15 H 0.11 1.29 8.14 -51.94 -0.42 0.86 16 16 N -0.27 -3.97 3.25 -53.67 -0.17 -4.14 16 17 C -0.04 -0.53 10.25 -17.04 -0.17 -0.70 16 18 C -0.06 -0.82 12.05 -17.73 -0.21 -1.04 16 19 N -0.28 -4.66 12.41 30.24 0.38 -4.29 16 20 N -0.09 -1.59 13.16 60.35 0.79 -0.79 16 21 C -0.13 -2.00 6.00 -25.00 -0.15 -2.15 16 22 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 23 H 0.02 0.48 8.10 -51.93 -0.42 0.06 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 1.11 8.09 -51.93 -0.42 0.69 16 26 H 0.07 1.18 8.02 -51.93 -0.42 0.76 16 27 H 0.07 0.82 6.22 -51.93 -0.32 0.49 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.19 1.98 7.39 -52.49 -0.39 1.59 16 30 H 0.19 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.09 1.34 8.05 -51.93 -0.42 0.92 16 32 H 0.07 1.14 8.04 -51.93 -0.42 0.72 16 LS Contribution 269.29 15.07 4.06 4.06 Total: -1.00 -30.42 269.29 -5.57 -35.99 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -4.45 Total: -1.83 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -1.88 Total: -19.55 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 1.73 Total: -34.47 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.42 -5.57 -35.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990963.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.047 kcal (2) G-P(sol) polarization free energy of solvation -30.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds