Wall clock time and date at job start Mon Mar 30 2020 03:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99729 * 2 1 4 4 H 1.48502 * 109.46797 * 269.99268 * 3 2 1 5 5 H 1.48497 * 109.47438 * 29.99515 * 3 2 1 6 6 H 1.48504 * 109.46866 * 149.99542 * 3 2 1 7 7 C 1.37871 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99837 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00135 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47307 * 179.97438 * 9 7 2 11 11 H 1.09008 * 110.66879 * 56.78536 * 10 9 7 12 12 C 1.54882 * 110.75932 * 293.55033 * 10 9 7 13 13 C 1.54268 * 104.19903 * 203.55796 * 12 10 9 14 14 C 1.53875 * 106.59613 * 23.60738 * 13 12 10 15 15 H 1.08987 * 110.03445 * 119.33670 * 14 13 12 16 16 N 1.46508 * 110.03098 * 240.72011 * 14 13 12 17 17 C 1.35316 * 125.86875 * 32.92226 * 16 14 13 18 18 C 1.35352 * 106.17299 * 179.97438 * 17 16 14 19 19 N 1.33774 * 106.49549 * 359.97438 * 18 17 16 20 20 N 1.28626 * 108.88702 * 0.02562 * 19 18 17 21 21 C 1.54274 * 106.64119 * 0.02562 * 14 13 12 22 22 H 0.96996 * 120.00547 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.46987 * 59.99893 * 9 7 2 24 24 H 1.08993 * 109.47106 * 299.99493 * 9 7 2 25 25 H 1.09003 * 110.48668 * 84.87453 * 12 10 9 26 26 H 1.09002 * 110.48752 * 322.23479 * 12 10 9 27 27 H 1.09000 * 110.02460 * 264.32525 * 13 12 10 28 28 H 1.08993 * 110.07485 * 142.91401 * 13 12 10 29 29 H 1.07994 * 126.90970 * 359.96732 * 17 16 14 30 30 H 1.08000 * 126.74897 * 180.26271 * 18 17 16 31 31 H 1.08997 * 110.48207 * 95.04212 * 21 14 13 32 32 H 1.09002 * 110.48566 * 217.69299 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9200 -3.5914 0.8538 12 6 3.0419 -3.7033 -1.3271 13 6 3.5055 -5.1699 -1.4449 14 6 2.5282 -6.0087 -0.6027 15 1 2.0200 -6.7364 -1.2351 16 7 3.2520 -6.6954 0.4701 17 6 4.3412 -6.2238 1.1199 18 6 4.6803 -7.1716 2.0247 19 7 3.7932 -8.1634 1.8863 20 7 2.9606 -7.8507 0.9572 21 6 1.5040 -5.0234 -0.0026 22 1 -0.4851 0.8400 -0.0004 23 1 0.6247 -2.5570 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 3.9011 -3.0344 -1.2774 26 1 2.3988 -3.4380 -2.1663 27 1 4.5182 -5.2737 -1.0554 28 1 3.4714 -5.4906 -2.4860 29 1 4.8397 -5.2808 0.9506 30 1 5.5022 -7.1326 2.7243 31 1 0.6129 -4.9715 -0.6282 32 1 1.2414 -5.3179 1.0135 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260990963.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:22 Heat of formation + Delta-G solvation = 59.429815 kcal Electronic energy + Delta-G solvation = -14878.877468 eV Core-core repulsion = 12454.112518 eV Total energy + Delta-G solvation = -2424.764950 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.20153 -39.57816 -35.55827 -34.17638 -32.02834 -31.44052 -29.61941 -27.72445 -24.57002 -23.79956 -23.38958 -21.08494 -20.68503 -18.50398 -18.43917 -17.19864 -16.58773 -16.17111 -15.72900 -15.48176 -14.75292 -14.48981 -14.20475 -13.49204 -13.29213 -13.12370 -12.71603 -12.63368 -12.54534 -12.24022 -12.01686 -11.86141 -11.77992 -11.36347 -11.28482 -11.05019 -10.76290 -10.52210 -10.28529 -8.16802 -6.26318 0.70857 1.42196 1.42986 1.48981 1.53188 1.66001 2.42778 3.17547 3.32623 3.52586 3.69260 3.85581 4.18958 4.31408 4.33585 4.39420 4.46455 4.50948 4.65377 4.79318 4.93750 4.98437 5.02464 5.21987 5.31842 5.35372 5.45897 5.54335 5.75679 5.79368 5.88082 6.27981 6.90893 7.43032 7.56875 8.95084 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.047765 B = 0.006212 C = 0.006082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.064597 B = 4506.007647 C = 4602.346072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.002 4.002 3 Si 0.958 3.042 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.526 4.526 8 H 0.066 0.934 9 C 0.034 3.966 10 C -0.078 4.078 11 H 0.061 0.939 12 C -0.101 4.101 13 C -0.121 4.121 14 C 0.139 3.861 15 H 0.127 0.873 16 N -0.275 5.275 17 C -0.039 4.039 18 C -0.062 4.062 19 N -0.313 5.313 20 N -0.127 5.127 21 C -0.124 4.124 22 H 0.261 0.739 23 H -0.003 1.003 24 H -0.020 1.020 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.214 0.786 30 H 0.219 0.781 31 H 0.090 0.910 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.933 -9.134 -2.488 13.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.200 4.200 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.565 4.565 8 H 0.084 0.916 9 C -0.003 4.003 10 C -0.097 4.097 11 H 0.080 0.920 12 C -0.139 4.139 13 C -0.159 4.159 14 C 0.038 3.962 15 H 0.145 0.855 16 N -0.069 5.069 17 C -0.191 4.191 18 C -0.220 4.220 19 N -0.178 5.178 20 N -0.106 5.106 21 C -0.162 4.162 22 H 0.070 0.930 23 H 0.015 0.985 24 H -0.002 1.002 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.109 0.891 28 H 0.125 0.875 29 H 0.231 0.769 30 H 0.235 0.765 31 H 0.108 0.892 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.803 -10.262 -2.576 13.764 hybrid contribution 0.395 2.054 0.258 2.107 sum 9.198 -8.208 -2.318 12.544 Atomic orbital electron populations 1.70094 1.07868 1.27534 1.52302 1.25937 0.95605 1.03232 0.95183 0.85541 0.78753 0.78912 0.78421 1.19783 1.21531 1.18569 1.21638 0.93618 0.91805 1.49390 0.91590 1.18973 0.93945 0.92906 0.94525 1.22082 0.96831 0.92731 0.98016 0.92030 1.22230 0.99795 0.94957 0.96895 1.22621 0.98374 0.93981 1.00929 1.22626 0.93476 0.94754 0.85311 0.85546 1.47915 1.20124 1.12731 1.26140 1.24130 0.92929 1.04089 0.97928 1.24180 1.03084 0.91378 1.03387 1.75007 1.04226 1.26335 1.12215 1.78204 1.22133 1.00259 1.10014 1.22827 0.98168 0.94519 1.00730 0.93039 0.98473 1.00171 0.90934 0.91892 0.89059 0.87542 0.76890 0.76459 0.89190 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.69 13.29 21.44 0.28 -55.40 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.96 42.51 29.54 68.60 2.03 44.53 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.53 -27.77 8.68 25.60 0.22 -27.54 16 8 H 0.07 3.26 7.64 -2.91 -0.02 3.24 16 9 C 0.03 1.64 4.50 29.85 0.13 1.77 16 10 C -0.08 -2.75 2.87 -9.46 -0.03 -2.78 16 11 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 12 C -0.10 -2.87 5.79 31.67 0.18 -2.69 16 13 C -0.12 -2.45 6.32 31.32 0.20 -2.25 16 14 C 0.14 3.33 3.93 45.72 0.18 3.51 16 15 H 0.13 2.64 8.14 -2.39 -0.02 2.63 16 16 N -0.27 -7.41 3.25 -323.72 -1.05 -8.46 16 17 C -0.04 -0.90 10.25 83.49 0.86 -0.05 16 18 C -0.06 -1.50 12.05 83.73 1.01 -0.50 16 19 N -0.31 -9.93 12.41 -58.25 -0.72 -10.65 16 20 N -0.13 -4.11 13.16 37.02 0.49 -3.63 16 21 C -0.12 -3.75 6.00 31.71 0.19 -3.56 16 22 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 23 H 0.00 -0.16 8.10 -2.39 -0.02 -0.18 16 24 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 25 H 0.07 2.06 8.09 -2.39 -0.02 2.04 16 26 H 0.06 1.93 8.02 -2.39 -0.02 1.91 16 27 H 0.09 1.59 6.22 -2.39 -0.01 1.58 16 28 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.21 3.65 7.39 -2.91 -0.02 3.63 16 30 H 0.22 3.46 8.06 -2.91 -0.02 3.43 16 31 H 0.09 2.70 8.05 -2.39 -0.02 2.68 16 32 H 0.05 1.77 8.04 -2.39 -0.02 1.75 16 Total: -1.00 -66.91 269.29 5.53 -61.38 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 1.09 Total: 5.97 kcal Atomic # 6 Polarization: -37.16 SS G_CDS: 3.41 Total: -33.75 kcal Atomic # 7 Polarization: -77.14 SS G_CDS: -1.00 Total: -78.14 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -66.91 5.53 -61.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990963.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.812 kcal (2) G-P(sol) polarization free energy of solvation -66.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds