Wall clock time and date at job start Mon Mar 30 2020 03:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 H 1.08994 * 110.43348 * 305.70142 * 10 9 7 12 12 C 1.54887 * 110.48605 * 68.24179 * 10 9 7 13 13 C 1.55035 * 102.68333 * 156.51264 * 12 10 9 14 14 C 1.54261 * 104.28027 * 322.23850 * 13 12 10 15 15 H 1.09001 * 110.07651 * 142.82492 * 14 13 12 16 16 N 1.46502 * 110.03070 * 264.22676 * 14 13 12 17 17 C 1.35314 * 125.86544 * 31.88684 * 16 14 13 18 18 C 1.35357 * 106.17605 * 179.90606 * 17 16 14 19 19 N 1.33770 * 106.49133 * 0.34659 * 18 17 16 20 20 N 1.28626 * 108.88976 * 359.77695 * 19 18 17 21 21 C 1.53875 * 106.60321 * 23.50967 * 14 13 12 22 22 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 25 25 H 1.09000 * 110.76001 * 274.93243 * 12 10 9 26 26 H 1.09004 * 110.75469 * 38.30692 * 12 10 9 27 27 H 1.08993 * 110.52570 * 203.48585 * 13 12 10 28 28 H 1.09001 * 110.47379 * 80.95416 * 13 12 10 29 29 H 1.07998 * 126.91643 * 0.02562 * 17 16 14 30 30 H 1.07994 * 126.75145 * 180.12550 * 18 17 16 31 31 H 1.08990 * 110.03736 * 240.71699 * 21 14 13 32 32 H 1.09006 * 110.07265 * 119.30473 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9457 -3.5639 -0.8299 12 6 3.0065 -3.7245 1.3470 13 6 3.4560 -5.2067 1.4157 14 6 2.2693 -5.9921 0.8203 15 1 2.6352 -6.8320 0.2296 16 7 1.3985 -6.4763 1.8943 17 6 1.1790 -5.8566 3.0770 18 6 0.3151 -6.6433 3.7603 19 7 0.0578 -7.6957 2.9756 20 7 0.7149 -7.5668 1.8774 21 6 1.4995 -5.0101 -0.0801 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5568 -0.8902 24 1 0.6248 -2.5571 0.8897 25 1 3.8684 -3.0574 1.3352 26 1 2.3422 -3.4846 2.1773 27 1 3.6311 -5.5054 2.4492 28 1 4.3540 -5.3609 0.8175 29 1 1.6056 -4.9214 3.4084 30 1 -0.0847 -6.4595 4.7465 31 1 0.4781 -4.8936 0.2819 32 1 1.4920 -5.3724 -1.1082 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260990966.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:27 Heat of formation + Delta-G solvation = 77.902840 kcal Electronic energy + Delta-G solvation = -14946.513668 eV Core-core repulsion = 12522.549768 eV Total energy + Delta-G solvation = -2423.963899 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.06043 -38.33249 -33.91894 -32.52808 -30.87491 -29.88446 -28.44756 -26.04483 -22.87554 -22.50923 -22.14117 -20.15206 -19.24752 -17.29263 -16.32794 -16.01627 -15.25994 -14.72943 -14.61971 -13.97096 -13.47683 -13.20641 -12.40241 -12.04587 -11.77630 -11.54879 -11.31725 -11.13653 -10.94230 -10.89373 -10.66212 -10.56216 -10.41148 -9.95077 -9.72672 -9.31861 -9.16935 -9.08204 -8.42698 -6.07056 -4.10124 1.84304 2.57144 2.78139 3.26283 3.33495 3.35153 4.35874 4.40746 4.70222 4.74828 4.91672 5.22348 5.28641 5.42557 5.46407 5.50208 5.63904 5.70531 5.79263 6.03949 6.06901 6.24268 6.25916 6.35589 6.63589 6.77219 6.86342 6.96190 7.56443 7.68550 7.90953 8.32511 8.72491 8.96403 9.54579 11.04088 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044631 B = 0.006566 C = 0.006301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.209092 B = 4263.682311 C = 4442.374477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.030 3.970 10 C -0.082 4.082 11 H 0.068 0.932 12 C -0.109 4.109 13 C -0.137 4.137 14 C 0.136 3.864 15 H 0.108 0.892 16 N -0.274 5.274 17 C -0.038 4.038 18 C -0.062 4.062 19 N -0.282 5.282 20 N -0.096 5.096 21 C -0.131 4.131 22 H 0.261 0.739 23 H 0.016 0.984 24 H 0.017 0.983 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.189 0.811 30 H 0.186 0.814 31 H 0.074 0.926 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.998 -8.993 4.170 11.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.007 4.007 10 C -0.100 4.100 11 H 0.087 0.913 12 C -0.146 4.146 13 C -0.175 4.175 14 C 0.034 3.966 15 H 0.126 0.874 16 N -0.068 5.068 17 C -0.190 4.190 18 C -0.220 4.220 19 N -0.148 5.148 20 N -0.076 5.076 21 C -0.169 4.169 22 H 0.071 0.929 23 H 0.034 0.966 24 H 0.035 0.965 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.206 0.794 30 H 0.203 0.797 31 H 0.093 0.907 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.474 -10.151 3.331 12.005 hybrid contribution 0.696 2.073 0.548 2.254 sum 6.170 -8.078 3.880 10.880 Atomic orbital electron populations 1.69961 1.06078 1.26690 1.50634 1.25027 0.94809 0.99270 0.95326 0.86622 0.79818 0.83597 0.78124 1.20686 1.21252 1.19887 1.21188 0.92945 0.90821 1.50741 0.92596 1.19132 0.93379 0.90905 0.97288 1.22107 0.97942 0.93600 0.96372 0.91325 1.22575 1.00480 0.92634 0.98930 1.22901 0.96127 0.97335 1.01138 1.22581 0.89584 0.98419 0.85973 0.87383 1.47763 1.30658 1.14815 1.13573 1.23710 1.04457 1.02892 0.87901 1.23560 1.02109 0.93686 1.02632 1.75033 1.18607 1.22281 0.98852 1.78222 1.07266 1.04185 1.17882 1.22766 1.00199 0.95394 0.98580 0.92941 0.96563 0.96517 0.90690 0.91378 0.90972 0.89330 0.79424 0.79675 0.90744 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.52 -13.67 8.71 -34.44 -0.30 -13.97 16 8 H 0.06 1.42 7.73 -52.48 -0.41 1.01 16 9 C 0.03 0.71 4.33 -27.88 -0.12 0.59 16 10 C -0.08 -1.46 2.81 -88.96 -0.25 -1.71 16 11 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 12 C -0.11 -1.66 5.73 -24.66 -0.14 -1.80 16 13 C -0.14 -1.62 5.92 -25.00 -0.15 -1.77 16 14 C 0.14 1.80 3.94 -66.81 -0.26 1.54 16 15 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 16 N -0.27 -4.13 3.17 -53.67 -0.17 -4.30 16 17 C -0.04 -0.53 10.15 -17.04 -0.17 -0.70 16 18 C -0.06 -0.88 12.06 -17.73 -0.21 -1.09 16 19 N -0.28 -4.82 12.41 30.23 0.38 -4.45 16 20 N -0.10 -1.65 13.16 60.35 0.79 -0.86 16 21 C -0.13 -2.04 6.17 -25.61 -0.16 -2.19 16 22 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.07 1.09 6.65 -51.93 -0.35 0.74 16 27 H 0.07 0.79 7.29 -51.93 -0.38 0.41 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.19 2.20 6.47 -52.49 -0.34 1.87 16 30 H 0.19 1.93 8.06 -52.49 -0.42 1.51 16 31 H 0.07 1.33 7.61 -51.93 -0.40 0.94 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 267.19 15.07 4.03 4.03 Total: -1.00 -30.66 267.19 -5.50 -36.16 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -4.38 Total: -1.39 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -1.87 Total: -19.63 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 1.74 Total: -34.99 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.66 -5.50 -36.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990966.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.060 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds