Wall clock time and date at job start Mon Mar 30 2020 03:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 H 1.08994 * 110.43348 * 305.70142 * 10 9 7 12 12 C 1.54887 * 110.48605 * 68.24179 * 10 9 7 13 13 C 1.55035 * 102.68333 * 156.51264 * 12 10 9 14 14 C 1.54261 * 104.28027 * 322.23850 * 13 12 10 15 15 H 1.09001 * 110.07651 * 142.82492 * 14 13 12 16 16 N 1.46502 * 110.03070 * 264.22676 * 14 13 12 17 17 C 1.35314 * 125.86544 * 31.88684 * 16 14 13 18 18 C 1.35357 * 106.17605 * 179.90606 * 17 16 14 19 19 N 1.33770 * 106.49133 * 0.34659 * 18 17 16 20 20 N 1.28626 * 108.88976 * 359.77695 * 19 18 17 21 21 C 1.53875 * 106.60321 * 23.50967 * 14 13 12 22 22 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 24 24 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 25 25 H 1.09000 * 110.76001 * 274.93243 * 12 10 9 26 26 H 1.09004 * 110.75469 * 38.30692 * 12 10 9 27 27 H 1.08993 * 110.52570 * 203.48585 * 13 12 10 28 28 H 1.09001 * 110.47379 * 80.95416 * 13 12 10 29 29 H 1.07998 * 126.91643 * 0.02562 * 17 16 14 30 30 H 1.07994 * 126.75145 * 180.12550 * 18 17 16 31 31 H 1.08990 * 110.03736 * 240.71699 * 21 14 13 32 32 H 1.09006 * 110.07265 * 119.30473 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9457 -3.5639 -0.8299 12 6 3.0065 -3.7245 1.3470 13 6 3.4560 -5.2067 1.4157 14 6 2.2693 -5.9921 0.8203 15 1 2.6352 -6.8320 0.2296 16 7 1.3985 -6.4763 1.8943 17 6 1.1790 -5.8566 3.0770 18 6 0.3151 -6.6433 3.7603 19 7 0.0578 -7.6957 2.9756 20 7 0.7149 -7.5668 1.8774 21 6 1.4995 -5.0101 -0.0801 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5568 -0.8902 24 1 0.6248 -2.5571 0.8897 25 1 3.8684 -3.0574 1.3352 26 1 2.3422 -3.4846 2.1773 27 1 3.6311 -5.5054 2.4492 28 1 4.3540 -5.3609 0.8175 29 1 1.6056 -4.9214 3.4084 30 1 -0.0847 -6.4595 4.7465 31 1 0.4781 -4.8936 0.2819 32 1 1.4920 -5.3724 -1.1082 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260990966.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:27 Heat of formation + Delta-G solvation = 58.888690 kcal Electronic energy + Delta-G solvation = -14947.338183 eV Core-core repulsion = 12522.549768 eV Total energy + Delta-G solvation = -2424.788415 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.20996 -39.58887 -35.56066 -34.18030 -32.05837 -31.39602 -29.67028 -27.72363 -24.55867 -23.70984 -23.38450 -21.29834 -20.67565 -18.70319 -18.06508 -17.17924 -16.54635 -16.50748 -15.84396 -15.20095 -14.70956 -14.49692 -14.28718 -13.66198 -13.26465 -12.87124 -12.71159 -12.69241 -12.42381 -12.30629 -12.07469 -11.93810 -11.78659 -11.44440 -11.13069 -11.09454 -10.79901 -10.52879 -10.30066 -8.17383 -6.27476 0.69303 1.42404 1.42444 1.49618 1.53288 1.64007 2.42475 3.16778 3.31965 3.53931 3.67560 3.86860 4.17494 4.26800 4.31464 4.40313 4.47677 4.49629 4.69792 4.81701 4.91792 4.97601 5.04017 5.23479 5.30733 5.33865 5.43583 5.54578 5.72002 5.80818 5.87916 6.27006 6.90316 7.42269 7.55011 8.94521 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044631 B = 0.006566 C = 0.006301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.209092 B = 4263.682311 C = 4442.374477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.004 4.004 3 Si 0.960 3.040 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.258 1.258 7 C -0.526 4.526 8 H 0.068 0.932 9 C 0.035 3.965 10 C -0.078 4.078 11 H 0.076 0.924 12 C -0.107 4.107 13 C -0.118 4.118 14 C 0.137 3.863 15 H 0.132 0.868 16 N -0.275 5.275 17 C -0.040 4.040 18 C -0.064 4.064 19 N -0.312 5.312 20 N -0.124 5.124 21 C -0.124 4.124 22 H 0.261 0.739 23 H -0.020 1.020 24 H -0.013 1.013 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.118 0.882 29 H 0.209 0.791 30 H 0.217 0.783 31 H 0.043 0.957 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.339 -9.144 4.736 13.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.201 4.201 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.182 1.182 7 C -0.564 4.564 8 H 0.086 0.914 9 C -0.002 4.002 10 C -0.096 4.096 11 H 0.094 0.906 12 C -0.144 4.144 13 C -0.156 4.156 14 C 0.037 3.963 15 H 0.150 0.850 16 N -0.069 5.069 17 C -0.192 4.192 18 C -0.222 4.222 19 N -0.177 5.177 20 N -0.103 5.103 21 C -0.163 4.163 22 H 0.069 0.931 23 H -0.002 1.002 24 H 0.005 0.995 25 H 0.094 0.906 26 H 0.074 0.926 27 H 0.108 0.892 28 H 0.136 0.864 29 H 0.225 0.775 30 H 0.234 0.766 31 H 0.062 0.938 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.833 -10.326 3.889 13.532 hybrid contribution -0.093 2.148 0.367 2.181 sum 7.740 -8.178 4.256 12.038 Atomic orbital electron populations 1.70115 1.07968 1.27534 1.52326 1.25972 0.95591 1.03356 0.95158 0.85515 0.78881 0.78790 0.78284 1.20199 1.21433 1.18161 1.21654 0.93669 0.91725 1.49346 0.91393 1.19009 0.93900 0.93218 0.94112 1.21941 0.96915 0.92225 0.98539 0.90594 1.22495 0.99847 0.95497 0.96592 1.22838 0.96171 0.93838 1.02775 1.22696 0.89228 0.98723 0.85684 0.84981 1.47940 1.30425 1.14443 1.14101 1.24138 1.04228 1.03315 0.87501 1.24163 1.01661 0.92710 1.03624 1.74992 1.19391 1.23821 0.99501 1.78170 1.08367 1.05420 1.18362 1.22625 0.98521 0.95077 1.00082 0.93072 1.00156 0.99477 0.90553 0.92588 0.89235 0.86397 0.77471 0.76598 0.93808 0.89179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.28 13.29 21.45 0.28 -55.99 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.96 42.59 29.54 68.60 2.03 44.62 16 4 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 7 C -0.53 -27.79 8.71 25.60 0.22 -27.57 16 8 H 0.07 3.35 7.73 -2.91 -0.02 3.33 16 9 C 0.03 1.71 4.33 29.85 0.13 1.84 16 10 C -0.08 -2.71 2.81 -9.72 -0.03 -2.74 16 11 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 12 C -0.11 -3.04 5.73 31.94 0.18 -2.85 16 13 C -0.12 -2.35 5.92 31.72 0.19 -2.16 16 14 C 0.14 3.30 3.94 45.71 0.18 3.48 16 15 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 16 N -0.27 -7.83 3.17 -323.73 -1.02 -8.86 16 17 C -0.04 -1.04 10.15 83.49 0.85 -0.19 16 18 C -0.06 -1.70 12.06 83.73 1.01 -0.69 16 19 N -0.31 -10.44 12.41 -58.26 -0.72 -11.17 16 20 N -0.12 -4.17 13.16 37.02 0.49 -3.68 16 21 C -0.12 -3.78 6.17 31.32 0.19 -3.58 16 22 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 23 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 24 H -0.01 -0.72 8.06 -2.39 -0.02 -0.73 16 25 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.06 1.72 6.65 -2.38 -0.02 1.70 16 27 H 0.09 1.56 7.29 -2.39 -0.02 1.55 16 28 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.21 4.41 6.47 -2.91 -0.02 4.40 16 30 H 0.22 4.04 8.06 -2.91 -0.02 4.01 16 31 H 0.04 1.60 7.61 -2.39 -0.02 1.58 16 32 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 Total: -1.00 -67.94 267.19 5.54 -62.40 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 1.10 Total: 6.90 kcal Atomic # 6 Polarization: -37.61 SS G_CDS: 3.39 Total: -34.22 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -0.98 Total: -79.70 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -67.94 5.54 -62.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990966.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.287 kcal (2) G-P(sol) polarization free energy of solvation -67.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds