Wall clock time and date at job start Mon Mar 30 2020 03:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99746 * 2 1 4 4 H 1.48504 * 109.46983 * 269.99901 * 3 2 1 5 5 H 1.48493 * 109.47503 * 29.99816 * 3 2 1 6 6 H 1.48501 * 109.47030 * 150.00520 * 3 2 1 7 7 C 1.37874 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99933 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99891 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47084 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.67326 * 56.77726 * 10 9 7 12 12 C 1.54896 * 110.75279 * 293.54577 * 10 9 7 13 13 C 1.54265 * 104.19162 * 203.74372 * 12 10 9 14 14 C 1.53871 * 106.60258 * 23.61359 * 13 12 10 15 15 H 1.09007 * 110.03174 * 240.66602 * 14 13 12 16 16 N 1.46499 * 110.03278 * 119.28522 * 14 13 12 17 17 C 1.35308 * 125.86944 * 326.44910 * 16 14 13 18 18 C 1.35347 * 106.17713 * 180.02562 * 17 16 14 19 19 N 1.33774 * 106.49812 * 0.02562 * 18 17 16 20 20 N 1.28637 * 108.88333 * 0.02562 * 19 18 17 21 21 C 1.54261 * 106.59643 * 359.97438 * 14 13 12 22 22 H 0.97004 * 119.99691 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47042 * 59.99961 * 9 7 2 24 24 H 1.08997 * 109.47429 * 300.00102 * 9 7 2 25 25 H 1.09000 * 110.48225 * 85.07016 * 12 10 9 26 26 H 1.08992 * 110.48821 * 322.42148 * 12 10 9 27 27 H 1.09003 * 110.03157 * 264.32398 * 13 12 10 28 28 H 1.09004 * 110.07557 * 142.91937 * 13 12 10 29 29 H 1.07997 * 126.91159 * 0.02959 * 17 16 14 30 30 H 1.08002 * 126.75518 * 179.97438 * 18 17 16 31 31 H 1.09002 * 110.48804 * 95.07226 * 21 14 13 32 32 H 1.09007 * 110.48634 * 217.71253 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 1 3.6227 -3.1858 -0.8527 12 6 3.6595 -3.3466 1.3282 13 6 4.7009 -4.4783 1.4482 14 6 5.9157 -4.0489 0.6070 15 1 6.0923 -4.7716 -0.1898 16 7 7.1029 -3.9411 1.4585 17 6 7.1170 -3.5479 2.7531 18 6 8.4111 -3.5929 3.1468 19 7 9.1163 -4.0054 2.0875 20 7 8.3121 -4.2023 1.1030 21 6 5.5698 -2.6715 0.0046 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6796 0.8895 24 1 3.8746 -0.6808 -0.8905 25 1 2.6518 -3.7592 1.2778 26 1 3.7485 -2.6559 2.1667 27 1 4.2875 -5.4089 1.0593 28 1 4.9950 -4.6073 2.4898 29 1 6.2666 -3.2568 3.3518 30 1 8.7985 -3.3438 4.1237 31 1 5.9671 -1.8714 0.6292 32 1 5.9566 -2.5914 -1.0113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260990968.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:30 Heat of formation + Delta-G solvation = 81.293001 kcal Electronic energy + Delta-G solvation = -14836.581536 eV Core-core repulsion = 12412.764645 eV Total energy + Delta-G solvation = -2423.816891 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.19201 -38.42439 -34.09182 -32.56547 -31.04297 -30.26037 -28.50655 -26.42037 -22.89575 -22.58237 -21.98971 -20.06150 -19.44945 -17.35573 -16.78324 -16.07307 -15.55390 -14.86044 -14.45854 -13.98740 -13.48887 -13.36797 -12.67015 -12.28315 -12.08929 -11.75255 -11.52464 -11.34272 -10.90847 -10.88385 -10.76569 -10.55945 -10.09831 -9.96433 -9.85241 -9.55451 -9.31699 -9.19208 -8.61336 -6.12028 -4.10464 1.69407 2.44144 2.63852 3.24638 3.33115 3.35238 4.30715 4.37957 4.60014 4.60388 4.84002 5.06591 5.21174 5.26755 5.37941 5.42210 5.51738 5.59944 5.75123 5.89466 5.94917 6.12178 6.16889 6.22618 6.56903 6.62228 6.72983 6.74916 7.10663 7.29594 7.69737 8.44514 8.58851 8.92368 9.50562 11.01137 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045414 B = 0.006526 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.397008 B = 4289.347362 C = 4549.452267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.518 4.518 8 H 0.074 0.926 9 C -0.006 4.006 10 C -0.070 4.070 11 H 0.076 0.924 12 C -0.106 4.106 13 C -0.137 4.137 14 C 0.134 3.866 15 H 0.112 0.888 16 N -0.275 5.275 17 C -0.044 4.044 18 C -0.060 4.060 19 N -0.282 5.282 20 N -0.093 5.093 21 C -0.131 4.131 22 H 0.263 0.737 23 H 0.017 0.983 24 H 0.013 0.987 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.188 0.812 30 H 0.187 0.813 31 H 0.073 0.927 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.429 -6.935 4.799 13.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.092 0.908 9 C -0.043 4.043 10 C -0.089 4.089 11 H 0.094 0.906 12 C -0.143 4.143 13 C -0.176 4.176 14 C 0.033 3.967 15 H 0.130 0.870 16 N -0.069 5.069 17 C -0.196 4.196 18 C -0.218 4.218 19 N -0.148 5.148 20 N -0.072 5.072 21 C -0.170 4.170 22 H 0.073 0.927 23 H 0.035 0.965 24 H 0.031 0.969 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.205 0.795 30 H 0.204 0.796 31 H 0.092 0.908 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.194 -7.304 3.627 13.850 hybrid contribution -0.485 1.353 0.872 1.681 sum 10.709 -5.952 4.499 13.052 Atomic orbital electron populations 1.69908 1.06276 1.26928 1.50987 1.25017 0.94696 0.99102 0.94573 0.86829 0.80329 0.83850 0.78566 1.20300 1.21364 1.19121 1.21072 0.89191 0.94445 1.50922 0.90822 1.19583 0.97376 0.90973 0.96418 1.22012 0.90125 0.99527 0.97249 0.90593 1.22321 0.97947 0.95345 0.98730 1.22695 0.94374 1.00938 0.99569 1.22675 0.80452 1.01136 0.92389 0.86955 1.47845 1.08299 1.41213 1.09542 1.23610 1.01204 1.07500 0.87272 1.23564 0.90522 1.07115 1.00604 1.75064 1.26017 1.15983 0.97695 1.78258 0.87249 1.19889 1.21835 1.22978 0.99355 0.93533 1.01126 0.92694 0.96491 0.96895 0.90386 0.91260 0.89989 0.90822 0.79458 0.79639 0.90843 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 13.96 55.43 0.77 -26.07 16 2 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 3 Si 0.88 21.01 27.47 -169.99 -4.67 16.34 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.52 -13.72 9.24 -34.44 -0.32 -14.04 16 8 H 0.07 2.08 7.89 -52.49 -0.41 1.67 16 9 C -0.01 -0.13 3.55 -27.88 -0.10 -0.23 16 10 C -0.07 -1.19 2.88 -88.63 -0.25 -1.45 16 11 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 12 C -0.11 -1.58 5.79 -25.07 -0.15 -1.73 16 13 C -0.14 -1.59 6.31 -25.62 -0.16 -1.75 16 14 C 0.13 1.69 3.92 -66.82 -0.26 1.43 16 15 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 16 N -0.28 -3.80 3.25 -53.68 -0.17 -3.97 16 17 C -0.04 -0.54 10.25 -17.05 -0.17 -0.71 16 18 C -0.06 -0.75 12.05 -17.74 -0.21 -0.97 16 19 N -0.28 -4.47 12.41 30.24 0.38 -4.09 16 20 N -0.09 -1.49 13.17 60.35 0.79 -0.70 16 21 C -0.13 -1.90 5.98 -25.09 -0.15 -2.05 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 23 H 0.02 0.37 7.15 -51.93 -0.37 0.00 16 24 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 25 H 0.08 1.24 8.09 -51.93 -0.42 0.82 16 26 H 0.07 1.07 8.01 -51.93 -0.42 0.65 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.77 6.26 -51.93 -0.33 0.45 16 29 H 0.19 1.75 7.43 -52.49 -0.39 1.36 16 30 H 0.19 1.63 8.06 -52.49 -0.42 1.20 16 31 H 0.07 1.13 7.96 -51.93 -0.41 0.72 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 265.74 15.07 4.00 4.00 Total: -1.00 -30.84 265.74 -5.20 -36.04 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -4.42 Total: -1.84 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -1.88 Total: -19.71 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 1.77 Total: -34.84 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.84 -5.20 -36.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990968.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.329 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds