Wall clock time and date at job start Mon Mar 30 2020 03:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99746 * 2 1 4 4 H 1.48504 * 109.46983 * 269.99901 * 3 2 1 5 5 H 1.48493 * 109.47503 * 29.99816 * 3 2 1 6 6 H 1.48501 * 109.47030 * 150.00520 * 3 2 1 7 7 C 1.37874 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99933 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99891 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47084 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.67326 * 56.77726 * 10 9 7 12 12 C 1.54896 * 110.75279 * 293.54577 * 10 9 7 13 13 C 1.54265 * 104.19162 * 203.74372 * 12 10 9 14 14 C 1.53871 * 106.60258 * 23.61359 * 13 12 10 15 15 H 1.09007 * 110.03174 * 240.66602 * 14 13 12 16 16 N 1.46499 * 110.03278 * 119.28522 * 14 13 12 17 17 C 1.35308 * 125.86944 * 326.44910 * 16 14 13 18 18 C 1.35347 * 106.17713 * 180.02562 * 17 16 14 19 19 N 1.33774 * 106.49812 * 0.02562 * 18 17 16 20 20 N 1.28637 * 108.88333 * 0.02562 * 19 18 17 21 21 C 1.54261 * 106.59643 * 359.97438 * 14 13 12 22 22 H 0.97004 * 119.99691 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47042 * 59.99961 * 9 7 2 24 24 H 1.08997 * 109.47429 * 300.00102 * 9 7 2 25 25 H 1.09000 * 110.48225 * 85.07016 * 12 10 9 26 26 H 1.08992 * 110.48821 * 322.42148 * 12 10 9 27 27 H 1.09003 * 110.03157 * 264.32398 * 13 12 10 28 28 H 1.09004 * 110.07557 * 142.91937 * 13 12 10 29 29 H 1.07997 * 126.91159 * 0.02959 * 17 16 14 30 30 H 1.08002 * 126.75518 * 179.97438 * 18 17 16 31 31 H 1.09002 * 110.48804 * 95.07226 * 21 14 13 32 32 H 1.09007 * 110.48634 * 217.71253 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 1 3.6227 -3.1858 -0.8527 12 6 3.6595 -3.3466 1.3282 13 6 4.7009 -4.4783 1.4482 14 6 5.9157 -4.0489 0.6070 15 1 6.0923 -4.7716 -0.1898 16 7 7.1029 -3.9411 1.4585 17 6 7.1170 -3.5479 2.7531 18 6 8.4111 -3.5929 3.1468 19 7 9.1163 -4.0054 2.0875 20 7 8.3121 -4.2023 1.1030 21 6 5.5698 -2.6715 0.0046 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6796 0.8895 24 1 3.8746 -0.6808 -0.8905 25 1 2.6518 -3.7592 1.2778 26 1 3.7485 -2.6559 2.1667 27 1 4.2875 -5.4089 1.0593 28 1 4.9950 -4.6073 2.4898 29 1 6.2666 -3.2568 3.3518 30 1 8.7985 -3.3438 4.1237 31 1 5.9671 -1.8714 0.6292 32 1 5.9566 -2.5914 -1.0113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260990968.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:29 Heat of formation + Delta-G solvation = 61.741876 kcal Electronic energy + Delta-G solvation = -14837.429337 eV Core-core repulsion = 12412.764645 eV Total energy + Delta-G solvation = -2424.664691 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.20499 -39.60953 -35.57813 -34.27241 -32.14640 -31.67962 -29.66121 -27.95063 -24.21746 -23.80964 -23.24781 -21.10462 -20.82930 -18.89150 -18.30802 -17.11916 -16.74209 -16.29603 -15.81036 -15.28145 -14.77685 -14.54684 -14.38895 -13.86992 -13.54716 -12.95782 -12.77647 -12.64207 -12.55134 -12.11986 -11.86705 -11.78655 -11.73355 -11.50508 -11.33706 -11.14316 -10.80824 -10.72799 -10.29987 -8.26212 -6.28159 0.69384 1.35436 1.37537 1.46448 1.47548 1.65085 2.36673 3.09749 3.31069 3.50312 3.67358 3.85139 4.14747 4.25785 4.30695 4.38979 4.42803 4.46593 4.62832 4.78566 4.86809 4.94736 5.00262 5.14154 5.20618 5.31312 5.37879 5.45262 5.66333 5.71112 5.76499 6.32801 6.80354 7.36202 7.55821 8.90132 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045414 B = 0.006526 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.397008 B = 4289.347362 C = 4549.452267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.005 3.995 3 Si 0.940 3.060 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.248 1.248 7 C -0.516 4.516 8 H 0.042 0.958 9 C -0.006 4.006 10 C -0.071 4.071 11 H 0.072 0.928 12 C -0.104 4.104 13 C -0.122 4.122 14 C 0.139 3.861 15 H 0.126 0.874 16 N -0.277 5.277 17 C -0.041 4.041 18 C -0.061 4.061 19 N -0.313 5.313 20 N -0.126 5.126 21 C -0.121 4.121 22 H 0.264 0.736 23 H 0.019 0.981 24 H 0.012 0.988 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.217 0.783 30 H 0.219 0.781 31 H 0.066 0.934 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.047 -7.012 5.716 15.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.191 4.191 3 Si 0.765 3.235 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.172 1.172 7 C -0.554 4.554 8 H 0.060 0.940 9 C -0.043 4.043 10 C -0.090 4.090 11 H 0.090 0.910 12 C -0.142 4.142 13 C -0.160 4.160 14 C 0.039 3.961 15 H 0.144 0.856 16 N -0.071 5.071 17 C -0.193 4.193 18 C -0.219 4.219 19 N -0.178 5.178 20 N -0.105 5.105 21 C -0.160 4.160 22 H 0.073 0.927 23 H 0.037 0.963 24 H 0.030 0.970 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.118 0.882 28 H 0.110 0.890 29 H 0.233 0.767 30 H 0.236 0.764 31 H 0.084 0.916 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.843 -7.399 4.534 15.500 hybrid contribution -1.045 1.340 0.613 1.807 sum 11.798 -6.058 5.147 14.226 Atomic orbital electron populations 1.70058 1.08141 1.27849 1.53238 1.25910 0.95440 1.03076 0.94699 0.85807 0.79593 0.79235 0.78888 1.19755 1.21341 1.17186 1.21428 0.91748 0.93078 1.49135 0.93993 1.19543 0.94144 0.94389 0.96221 1.21882 0.92161 0.96589 0.98391 0.90982 1.22231 0.98287 0.96320 0.97332 1.22585 0.92650 1.00043 1.00756 1.22637 0.80497 1.00114 0.92898 0.85613 1.47935 1.07921 1.41022 1.10216 1.24158 1.02105 1.06257 0.86752 1.24189 0.90568 1.05992 1.01161 1.75025 1.27004 1.17033 0.98769 1.78229 0.88079 1.21650 1.22519 1.22804 0.96889 0.94632 1.01680 0.92734 0.96280 0.96993 0.92027 0.91743 0.88170 0.88972 0.76651 0.76446 0.91566 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.93 13.96 21.45 0.30 -57.63 16 2 C 0.01 0.30 5.47 84.65 0.46 0.76 16 3 Si 0.94 43.02 27.47 68.60 1.88 44.90 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 6 H -0.25 -10.51 6.54 99.48 0.65 -9.86 16 7 C -0.52 -27.61 9.24 25.60 0.24 -27.38 16 8 H 0.04 2.45 7.89 -2.91 -0.02 2.42 16 9 C -0.01 -0.24 3.55 29.85 0.11 -0.13 16 10 C -0.07 -2.33 2.88 -9.51 -0.03 -2.35 16 11 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 12 C -0.10 -2.95 5.79 31.67 0.18 -2.76 16 13 C -0.12 -2.45 6.31 31.32 0.20 -2.25 16 14 C 0.14 3.11 3.92 45.71 0.18 3.29 16 15 H 0.13 2.52 8.14 -2.38 -0.02 2.50 16 16 N -0.28 -6.89 3.25 -323.75 -1.05 -7.95 16 17 C -0.04 -0.85 10.25 83.49 0.86 0.00 16 18 C -0.06 -1.35 12.05 83.73 1.01 -0.34 16 19 N -0.31 -9.37 12.41 -58.26 -0.72 -10.09 16 20 N -0.13 -3.83 13.17 37.02 0.49 -3.34 16 21 C -0.12 -3.23 5.98 31.66 0.19 -3.04 16 22 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 23 H 0.02 0.80 7.15 -2.39 -0.02 0.79 16 24 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 25 H 0.06 1.94 8.09 -2.39 -0.02 1.92 16 26 H 0.06 1.88 8.01 -2.39 -0.02 1.86 16 27 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.09 1.56 6.26 -2.38 -0.01 1.54 16 29 H 0.22 3.08 7.43 -2.91 -0.02 3.06 16 30 H 0.22 3.02 8.06 -2.91 -0.02 3.00 16 31 H 0.07 1.88 7.96 -2.39 -0.02 1.86 16 32 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 Total: -1.00 -67.37 265.74 5.33 -62.04 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 1.04 Total: 6.27 kcal Atomic # 6 Polarization: -37.60 SS G_CDS: 3.39 Total: -34.21 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -0.99 Total: -79.00 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.88 Total: 44.90 kcal Total: -67.37 5.33 -62.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260990968.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.786 kcal (2) G-P(sol) polarization free energy of solvation -67.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds