Wall clock time and date at job start Mon Mar 30 2020 03:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00146 * 2 1 4 4 H 1.48502 * 109.46803 * 269.99565 * 3 2 1 5 5 H 1.48496 * 109.47466 * 29.99492 * 3 2 1 6 6 H 1.48499 * 109.47225 * 149.99947 * 3 2 1 7 7 C 1.37873 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00531 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99871 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46970 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.54016 * 307.61253 * 10 9 7 12 12 C 1.54891 * 110.48809 * 70.22660 * 10 9 7 13 13 C 1.54888 * 102.75120 * 156.61818 * 12 10 9 14 14 C 1.54261 * 104.19672 * 322.06034 * 13 12 10 15 15 H 1.08998 * 110.03492 * 264.32506 * 14 13 12 16 16 N 1.46501 * 110.03258 * 142.89234 * 14 13 12 17 17 N 1.28596 * 124.62171 * 302.52926 * 16 14 13 18 18 C 1.31377 * 108.72175 * 179.83343 * 17 16 14 19 19 C 1.39678 * 105.89719 * 0.41014 * 18 17 16 20 20 N 1.28605 * 124.61560 * 122.83607 * 16 14 13 21 21 C 1.53876 * 106.59990 * 23.60631 * 14 13 12 22 22 H 0.97007 * 119.99573 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47443 * 60.00100 * 9 7 2 24 24 H 1.08993 * 109.47481 * 299.99875 * 9 7 2 25 25 H 1.09005 * 110.75269 * 38.30322 * 12 10 9 26 26 H 1.08999 * 110.75712 * 274.93756 * 12 10 9 27 27 H 1.09000 * 110.48622 * 203.37816 * 13 12 10 28 28 H 1.09001 * 110.59737 * 80.79460 * 13 12 10 29 29 H 1.07996 * 127.05039 * 180.16920 * 18 17 16 30 30 H 1.07998 * 127.05164 * 179.76234 * 19 18 17 31 31 H 1.08995 * 110.03160 * 119.28453 * 21 14 13 32 32 H 1.08998 * 110.03319 * 240.71542 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9672 -3.5480 -0.8081 12 6 2.9705 -3.7552 1.3659 13 6 3.4210 -5.2364 1.4134 14 6 2.2494 -6.0089 0.7729 15 1 1.5822 -6.3854 1.5482 16 7 2.7618 -7.1204 -0.0324 17 7 3.5876 -6.9944 -1.0100 18 6 3.8382 -8.1848 -1.5063 19 6 3.0799 -9.0818 -0.7505 20 7 2.4425 -8.3544 0.1387 21 6 1.5017 -5.0080 -0.1254 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6239 -2.5567 0.8902 25 1 2.2846 -3.5337 2.1836 26 1 3.8323 -3.0883 1.3918 27 1 3.5709 -5.5567 2.4444 28 1 4.3335 -5.3784 0.8343 29 1 4.4931 -8.4208 -2.3320 30 1 3.0281 -10.1537 -0.8721 31 1 1.5201 -5.3492 -1.1604 32 1 0.4717 -4.8988 0.2140 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260993309.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:35 Heat of formation + Delta-G solvation = 89.193167 kcal Electronic energy + Delta-G solvation = -14765.406319 eV Core-core repulsion = 12341.932005 eV Total energy + Delta-G solvation = -2423.474314 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.40194 -38.06581 -33.52946 -32.29496 -32.10961 -29.74655 -28.15165 -25.93251 -22.93893 -22.61626 -22.04132 -19.88268 -19.12201 -17.23608 -16.42368 -16.02375 -15.23011 -14.74852 -14.59145 -14.03042 -13.57807 -13.05079 -12.24476 -11.84844 -11.64033 -11.51657 -11.36241 -11.00115 -10.82428 -10.70249 -10.48382 -10.44619 -10.23471 -10.17428 -9.68266 -9.34575 -9.13385 -8.93901 -8.34947 -6.00110 -4.01903 2.01275 2.49835 2.58789 3.32029 3.38566 3.41477 4.28729 4.45745 4.80178 4.86249 5.07768 5.15661 5.35392 5.37374 5.63795 5.77036 5.82606 5.91514 5.99509 6.13005 6.21658 6.28275 6.38367 6.48133 6.78091 6.94406 6.96043 7.09790 7.65732 7.79275 7.99128 8.42216 8.52815 9.04539 9.62192 11.11231 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.062076 B = 0.005668 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.948370 B = 4938.877029 C = 4977.115952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.078 4.078 11 H 0.067 0.933 12 C -0.102 4.102 13 C -0.132 4.132 14 C 0.159 3.841 15 H 0.114 0.886 16 N -0.139 5.139 17 N -0.277 5.277 18 C -0.042 4.042 19 C -0.040 4.040 20 N -0.297 5.297 21 C -0.127 4.127 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.019 0.981 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.193 0.807 30 H 0.192 0.808 31 H 0.067 0.933 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.834 -14.369 0.516 15.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.096 4.096 11 H 0.086 0.914 12 C -0.140 4.140 13 C -0.171 4.171 14 C 0.060 3.940 15 H 0.132 0.868 16 N -0.041 5.041 17 N -0.118 5.118 18 C -0.224 4.224 19 C -0.222 4.222 20 N -0.138 5.138 21 C -0.166 4.166 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.037 0.963 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.210 0.790 30 H 0.209 0.791 31 H 0.086 0.914 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.181 -13.212 1.288 14.250 hybrid contribution 0.744 0.037 -0.652 0.990 sum 5.925 -13.175 0.635 14.460 Atomic orbital electron populations 1.69965 1.06049 1.26550 1.51045 1.25013 0.94807 0.99199 0.95426 0.86626 0.79861 0.83623 0.78090 1.20728 1.21300 1.19881 1.21221 0.93020 0.90873 1.50250 0.92611 1.19153 0.93451 0.90961 0.97261 1.22051 0.98034 0.93277 0.96279 0.91415 1.22432 1.00622 0.92142 0.98826 1.22834 0.97004 0.97248 1.00023 1.22629 0.96885 0.82458 0.92040 0.86802 1.48588 1.28884 1.04995 1.21658 1.74064 1.09118 1.26057 1.02605 1.24774 1.05051 0.88316 1.04234 1.24711 0.99743 1.01599 0.96158 1.74042 1.22967 0.92438 1.24361 1.22689 0.99776 0.95309 0.98788 0.93048 0.96592 0.96303 0.91031 0.90862 0.91239 0.90381 0.79031 0.79097 0.91410 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.16 8.77 -34.44 -0.30 -14.46 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.71 4.32 -27.88 -0.12 0.59 16 10 C -0.08 -1.54 2.80 -88.96 -0.25 -1.79 16 11 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 12 C -0.10 -1.78 5.99 -24.74 -0.15 -1.93 16 13 C -0.13 -1.96 6.49 -25.08 -0.16 -2.12 16 14 C 0.16 2.43 3.87 -66.81 -0.26 2.17 16 15 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 16 N -0.14 -2.20 3.66 -3.94 -0.01 -2.21 16 17 N -0.28 -4.40 11.16 30.67 0.34 -4.06 16 18 C -0.04 -0.52 12.20 -17.21 -0.21 -0.73 16 19 C -0.04 -0.48 12.20 -17.21 -0.21 -0.69 16 20 N -0.30 -4.48 12.05 30.67 0.37 -4.11 16 21 C -0.13 -2.19 6.06 -25.61 -0.16 -2.34 16 22 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.02 0.49 8.02 -51.93 -0.42 0.07 16 25 H 0.07 1.25 7.97 -51.93 -0.41 0.83 16 26 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 1.21 7.59 -51.93 -0.39 0.82 16 29 H 0.19 1.63 8.06 -52.49 -0.42 1.20 16 30 H 0.19 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.07 1.22 7.74 -51.93 -0.40 0.82 16 32 H 0.08 1.36 7.84 -51.93 -0.41 0.96 16 LS Contribution 271.20 15.07 4.09 4.09 Total: -1.00 -31.16 271.20 -5.95 -37.11 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -4.53 Total: -1.55 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -1.91 Total: -19.81 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 1.43 Total: -36.29 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.16 -5.95 -37.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993309.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.301 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds