Wall clock time and date at job start Mon Mar 30 2020 03:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00146 * 2 1 4 4 H 1.48502 * 109.46803 * 269.99565 * 3 2 1 5 5 H 1.48496 * 109.47466 * 29.99492 * 3 2 1 6 6 H 1.48499 * 109.47225 * 149.99947 * 3 2 1 7 7 C 1.37873 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00531 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99871 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46970 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.54016 * 307.61253 * 10 9 7 12 12 C 1.54891 * 110.48809 * 70.22660 * 10 9 7 13 13 C 1.54888 * 102.75120 * 156.61818 * 12 10 9 14 14 C 1.54261 * 104.19672 * 322.06034 * 13 12 10 15 15 H 1.08998 * 110.03492 * 264.32506 * 14 13 12 16 16 N 1.46501 * 110.03258 * 142.89234 * 14 13 12 17 17 N 1.28596 * 124.62171 * 302.52926 * 16 14 13 18 18 C 1.31377 * 108.72175 * 179.83343 * 17 16 14 19 19 C 1.39678 * 105.89719 * 0.41014 * 18 17 16 20 20 N 1.28605 * 124.61560 * 122.83607 * 16 14 13 21 21 C 1.53876 * 106.59990 * 23.60631 * 14 13 12 22 22 H 0.97007 * 119.99573 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47443 * 60.00100 * 9 7 2 24 24 H 1.08993 * 109.47481 * 299.99875 * 9 7 2 25 25 H 1.09005 * 110.75269 * 38.30322 * 12 10 9 26 26 H 1.08999 * 110.75712 * 274.93756 * 12 10 9 27 27 H 1.09000 * 110.48622 * 203.37816 * 13 12 10 28 28 H 1.09001 * 110.59737 * 80.79460 * 13 12 10 29 29 H 1.07996 * 127.05039 * 180.16920 * 18 17 16 30 30 H 1.07998 * 127.05164 * 179.76234 * 19 18 17 31 31 H 1.08995 * 110.03160 * 119.28453 * 21 14 13 32 32 H 1.08998 * 110.03319 * 240.71542 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9672 -3.5480 -0.8081 12 6 2.9705 -3.7552 1.3659 13 6 3.4210 -5.2364 1.4134 14 6 2.2494 -6.0089 0.7729 15 1 1.5822 -6.3854 1.5482 16 7 2.7618 -7.1204 -0.0324 17 7 3.5876 -6.9944 -1.0100 18 6 3.8382 -8.1848 -1.5063 19 6 3.0799 -9.0818 -0.7505 20 7 2.4425 -8.3544 0.1387 21 6 1.5017 -5.0080 -0.1254 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6239 -2.5567 0.8902 25 1 2.2846 -3.5337 2.1836 26 1 3.8323 -3.0883 1.3918 27 1 3.5709 -5.5567 2.4444 28 1 4.3335 -5.3784 0.8343 29 1 4.4931 -8.4208 -2.3320 30 1 3.0281 -10.1537 -0.8721 31 1 1.5201 -5.3492 -1.1604 32 1 0.4717 -4.8988 0.2140 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260993309.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:35 Heat of formation + Delta-G solvation = 69.836854 kcal Electronic energy + Delta-G solvation = -14766.245672 eV Core-core repulsion = 12341.932005 eV Total energy + Delta-G solvation = -2424.313667 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.43558 -39.47468 -35.36419 -33.69722 -33.29897 -31.33917 -29.51632 -27.66148 -24.55185 -23.78284 -23.33286 -21.16631 -20.63356 -18.54878 -18.31110 -17.21057 -16.68379 -16.13755 -15.90795 -15.31115 -14.98329 -14.54165 -14.21824 -13.51373 -13.28522 -12.91186 -12.74322 -12.51295 -12.44897 -12.23856 -11.98417 -11.89028 -11.60411 -11.39231 -11.26085 -11.11101 -11.06442 -10.51991 -10.15679 -8.17295 -6.26698 0.95155 1.41097 1.41686 1.42265 1.52873 1.67457 2.42668 3.16444 3.25766 3.50921 3.73682 3.86077 4.17091 4.27364 4.39806 4.45169 4.50737 4.64924 4.69688 4.80193 4.93441 5.06036 5.15982 5.22323 5.30014 5.40745 5.44266 5.55613 5.76299 5.86663 5.88829 6.28913 6.89193 7.42078 7.50378 8.94553 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.062076 B = 0.005668 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.948370 B = 4938.877029 C = 4977.115952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.960 3.040 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.530 4.530 8 H 0.060 0.940 9 C 0.035 3.965 10 C -0.073 4.073 11 H 0.053 0.947 12 C -0.097 4.097 13 C -0.117 4.117 14 C 0.165 3.835 15 H 0.132 0.868 16 N -0.158 5.158 17 N -0.316 5.316 18 C -0.035 4.035 19 C -0.029 4.029 20 N -0.322 5.322 21 C -0.118 4.118 22 H 0.262 0.738 23 H -0.016 1.016 24 H 0.001 0.999 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.229 0.771 30 H 0.233 0.767 31 H 0.056 0.944 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.341 -15.647 0.770 17.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.568 4.568 8 H 0.078 0.922 9 C -0.002 4.002 10 C -0.092 4.092 11 H 0.072 0.928 12 C -0.135 4.135 13 C -0.155 4.155 14 C 0.065 3.935 15 H 0.149 0.851 16 N -0.059 5.059 17 N -0.157 5.157 18 C -0.217 4.217 19 C -0.211 4.211 20 N -0.163 5.163 21 C -0.157 4.157 22 H 0.071 0.929 23 H 0.002 0.998 24 H 0.019 0.981 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.115 0.885 28 H 0.090 0.910 29 H 0.245 0.755 30 H 0.249 0.751 31 H 0.074 0.926 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.697 -14.491 1.550 16.039 hybrid contribution 0.270 0.335 -0.822 0.928 sum 6.966 -14.156 0.728 15.794 Atomic orbital electron populations 1.70097 1.07741 1.27577 1.52149 1.25917 0.95665 1.03121 0.95025 0.85526 0.78833 0.78888 0.78295 1.20202 1.20883 1.18607 1.21627 0.93435 0.92063 1.49714 0.92201 1.19023 0.93803 0.92618 0.94756 1.21830 0.96911 0.92793 0.97620 0.92812 1.22327 1.00030 0.94297 0.96885 1.22689 0.96413 0.94890 1.01524 1.22470 0.96982 0.82348 0.91698 0.85054 1.48471 1.29929 1.05138 1.22357 1.74042 1.10148 1.28088 1.03470 1.25484 1.04574 0.87322 1.04365 1.25460 0.97943 1.03232 0.94480 1.74020 1.24023 0.92477 1.25753 1.22497 0.99734 0.94578 0.98861 0.92928 0.99800 0.98084 0.91131 0.91357 0.88509 0.90989 0.75510 0.75061 0.92560 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 2 C 0.00 0.00 5.46 84.65 0.46 0.47 16 3 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.53 -29.70 8.77 25.60 0.22 -29.48 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 9 C 0.04 1.82 4.32 29.85 0.13 1.94 16 10 C -0.07 -2.96 2.80 -9.72 -0.03 -2.99 16 11 H 0.05 2.31 8.14 -2.38 -0.02 2.30 16 12 C -0.10 -3.35 5.99 31.89 0.19 -3.16 16 13 C -0.12 -3.28 6.49 31.67 0.21 -3.07 16 14 C 0.16 4.86 3.87 45.71 0.18 5.03 16 15 H 0.13 3.37 8.14 -2.39 -0.02 3.35 16 16 N -0.16 -4.77 3.66 -166.39 -0.61 -5.38 16 17 N -0.32 -9.61 11.16 -56.87 -0.63 -10.24 16 18 C -0.04 -0.78 12.20 85.11 1.04 0.26 16 19 C -0.03 -0.60 12.20 85.11 1.04 0.44 16 20 N -0.32 -9.04 12.05 -56.86 -0.69 -9.72 16 21 C -0.12 -4.13 6.06 31.32 0.19 -3.94 16 22 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 23 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 24 H 0.00 0.04 8.02 -2.39 -0.02 0.03 16 25 H 0.07 2.44 7.97 -2.38 -0.02 2.42 16 26 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.10 2.22 8.14 -2.39 -0.02 2.21 16 28 H 0.07 2.14 7.59 -2.39 -0.02 2.12 16 29 H 0.23 3.01 8.06 -2.91 -0.02 2.98 16 30 H 0.23 2.57 8.06 -2.91 -0.02 2.55 16 31 H 0.06 2.07 7.74 -2.39 -0.02 2.05 16 32 H 0.08 2.74 7.84 -2.39 -0.02 2.73 16 Total: -1.00 -68.21 271.20 5.10 -63.11 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 1.09 Total: 7.01 kcal Atomic # 6 Polarization: -38.12 SS G_CDS: 3.63 Total: -34.50 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -1.64 Total: -81.84 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -68.21 5.10 -63.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993309.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.942 kcal (2) G-P(sol) polarization free energy of solvation -68.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds