Wall clock time and date at job start Mon Mar 30 2020 03:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99644 * 2 1 4 4 H 1.48506 * 109.47036 * 269.99030 * 3 2 1 5 5 H 1.48492 * 109.47726 * 29.99466 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99815 * 3 2 1 7 7 C 1.37875 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99384 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00179 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47079 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.01436 * 306.38497 * 10 9 7 12 12 C 1.53871 * 110.03279 * 67.83135 * 10 9 7 13 13 C 1.54467 * 106.68408 * 119.44315 * 12 10 9 14 14 C 1.54889 * 104.10036 * 23.34285 * 13 12 10 15 15 H 1.09005 * 110.75628 * 80.71210 * 14 13 12 16 16 N 1.46504 * 110.75504 * 203.89292 * 14 13 12 17 17 N 1.28597 * 124.61743 * 236.06818 * 16 14 13 18 18 C 1.31384 * 108.71793 * 179.97438 * 17 16 14 19 19 C 1.39673 * 105.89841 * 359.97438 * 18 17 16 20 20 N 1.28596 * 124.61801 * 56.04059 * 16 14 13 21 21 C 1.54267 * 110.03205 * 185.00011 * 10 9 7 22 22 H 0.96993 * 119.99975 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47198 * 59.99499 * 9 7 2 24 24 H 1.09000 * 109.46989 * 299.99193 * 9 7 2 25 25 H 1.09001 * 110.02876 * 238.56600 * 12 10 9 26 26 H 1.08995 * 110.03569 * 359.97438 * 12 10 9 27 27 H 1.09000 * 110.40480 * 264.75520 * 13 12 10 28 28 H 1.09004 * 110.65779 * 142.05067 * 13 12 10 29 29 H 1.07994 * 127.04789 * 179.97438 * 18 17 16 30 30 H 1.07997 * 127.05071 * 179.97438 * 19 18 17 31 31 H 1.09000 * 110.48975 * 98.42690 * 21 10 9 32 32 H 1.09002 * 110.59780 * 335.83588 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 1 2.9496 -3.5508 -0.8240 12 6 3.0025 -3.7082 1.3393 13 6 2.6863 -5.0774 1.9806 14 6 2.2875 -5.9727 0.7813 15 1 3.1729 -6.3448 0.2657 16 7 1.4405 -7.0839 1.2220 17 7 1.6996 -8.3265 1.0156 18 6 0.7376 -9.0507 1.5412 19 6 -0.1614 -8.1421 2.1043 20 7 0.3369 -6.9495 1.8683 21 6 1.4913 -5.0019 -0.1258 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5570 -0.8896 24 1 0.6242 -2.5567 0.8904 25 1 4.0748 -3.6198 1.1650 26 1 2.6620 -2.9019 1.9889 27 1 1.8564 -4.9863 2.6813 28 1 3.5669 -5.4802 2.4811 29 1 0.6582 -10.1277 1.5382 30 1 -1.0786 -8.3725 2.6259 31 1 1.5019 -5.3498 -1.1587 32 1 0.4664 -4.9003 0.2311 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260993310.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:38 Heat of formation + Delta-G solvation = 87.761937 kcal Electronic energy + Delta-G solvation = -14764.997755 eV Core-core repulsion = 12341.461378 eV Total energy + Delta-G solvation = -2423.536377 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.37066 -38.07821 -33.53348 -32.27405 -32.13870 -29.68766 -28.14700 -25.89439 -22.97677 -22.62815 -22.08465 -19.93734 -18.92272 -17.15424 -16.23537 -16.01643 -15.58514 -14.69222 -14.64993 -14.33295 -13.15288 -12.89106 -12.36222 -11.93489 -11.55357 -11.48960 -11.35265 -11.06987 -10.87551 -10.74109 -10.50612 -10.43565 -10.20060 -10.06695 -9.75231 -9.28798 -9.12521 -8.92733 -8.35427 -6.00047 -4.02533 2.02149 2.51178 2.60580 3.31355 3.38133 3.40655 4.32837 4.45205 4.75496 4.92478 5.06636 5.18041 5.35379 5.37933 5.63352 5.73998 5.82739 5.92160 6.02333 6.13353 6.20203 6.27560 6.41459 6.54558 6.81343 6.84465 6.99790 7.14963 7.66617 7.80127 7.99316 8.40852 8.54290 9.04329 9.61585 11.11157 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.062709 B = 0.005785 C = 0.005565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.401332 B = 4839.212983 C = 5030.571481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.030 3.970 10 C -0.080 4.080 11 H 0.065 0.935 12 C -0.107 4.107 13 C -0.128 4.128 14 C 0.154 3.846 15 H 0.118 0.882 16 N -0.137 5.137 17 N -0.298 5.298 18 C -0.040 4.040 19 C -0.041 4.041 20 N -0.277 5.277 21 C -0.125 4.125 22 H 0.260 0.740 23 H 0.015 0.985 24 H 0.020 0.980 25 H 0.057 0.943 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.192 0.808 30 H 0.193 0.807 31 H 0.065 0.935 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.799 -14.187 3.229 14.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.007 4.007 10 C -0.099 4.099 11 H 0.083 0.917 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.054 3.946 15 H 0.136 0.864 16 N -0.039 5.039 17 N -0.139 5.139 18 C -0.222 4.222 19 C -0.223 4.223 20 N -0.118 5.118 21 C -0.163 4.163 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.038 0.962 25 H 0.076 0.924 26 H 0.104 0.896 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.209 0.791 30 H 0.210 0.790 31 H 0.084 0.916 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.455 -13.029 2.812 13.769 hybrid contribution -0.230 0.059 0.267 0.357 sum 3.225 -12.970 3.079 13.715 Atomic orbital electron populations 1.69967 1.06056 1.26579 1.50807 1.25020 0.94798 0.99200 0.95406 0.86630 0.79856 0.83657 0.78065 1.20736 1.21290 1.19882 1.21223 0.93002 0.90888 1.50509 0.92576 1.19202 0.93419 0.90703 0.97410 1.21799 0.98026 0.93752 0.96305 0.91664 1.22153 0.99659 0.94958 0.97701 1.22804 1.01679 0.95863 0.96310 1.22974 0.91886 0.82033 0.97666 0.86430 1.48419 1.14653 1.04459 1.36400 1.74026 1.26205 0.92161 1.21476 1.24707 0.93161 1.01540 1.02782 1.24779 1.03270 0.88095 1.06127 1.74079 0.99461 1.26342 1.11942 1.22913 1.00694 0.94829 0.97908 0.93014 0.96628 0.96159 0.92421 0.89635 0.90084 0.91572 0.79075 0.78985 0.91599 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.13 8.46 -34.44 -0.29 -14.43 16 8 H 0.06 1.48 7.71 -52.48 -0.40 1.07 16 9 C 0.03 0.74 4.11 -27.89 -0.11 0.63 16 10 C -0.08 -1.55 2.88 -89.50 -0.26 -1.80 16 11 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 12 C -0.11 -1.85 6.10 -25.51 -0.16 -2.01 16 13 C -0.13 -1.96 6.48 -24.97 -0.16 -2.12 16 14 C 0.15 2.37 3.88 -65.94 -0.26 2.11 16 15 H 0.12 1.61 8.14 -51.93 -0.42 1.18 16 16 N -0.14 -2.21 3.84 -3.20 -0.01 -2.22 16 17 N -0.30 -4.53 12.05 30.67 0.37 -4.16 16 18 C -0.04 -0.49 12.20 -17.21 -0.21 -0.70 16 19 C -0.04 -0.52 12.20 -17.21 -0.21 -0.73 16 20 N -0.28 -4.52 11.17 30.67 0.34 -4.18 16 21 C -0.12 -2.16 6.00 -25.07 -0.15 -2.31 16 22 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 23 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.09 1.68 7.40 -51.93 -0.38 1.29 16 27 H 0.08 1.35 7.77 -51.93 -0.40 0.95 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.19 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.19 1.70 8.06 -52.49 -0.42 1.27 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 1.60 7.52 -51.93 -0.39 1.21 16 LS Contribution 270.77 15.07 4.08 4.08 Total: -1.00 -31.17 270.77 -5.93 -37.10 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -4.52 Total: -1.16 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -1.90 Total: -19.85 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 1.44 Total: -36.52 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.17 -5.93 -37.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993310.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.861 kcal (2) G-P(sol) polarization free energy of solvation -31.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds