Wall clock time and date at job start Mon Mar 30 2020 03:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00241 * 2 1 4 4 H 1.48489 * 109.47290 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47162 * 300.00300 * 3 2 1 6 6 H 1.48505 * 109.47104 * 59.99524 * 3 2 1 7 7 C 1.37880 * 119.99409 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99576 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00592 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47429 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.43270 * 52.46179 * 10 9 7 12 12 C 1.54886 * 110.48378 * 289.77643 * 10 9 7 13 13 C 1.54892 * 102.74717 * 203.37778 * 12 10 9 14 14 C 1.54263 * 104.19544 * 37.94143 * 13 12 10 15 15 H 1.09000 * 110.07556 * 217.08331 * 14 13 12 16 16 N 1.46504 * 110.03081 * 95.67610 * 14 13 12 17 17 N 1.28597 * 124.61743 * 122.83749 * 16 14 13 18 18 C 1.31384 * 108.71793 * 179.97438 * 17 16 14 19 19 C 1.39673 * 105.89841 * 359.97438 * 18 17 16 20 20 N 1.28596 * 124.61801 * 302.80990 * 16 14 13 21 21 C 1.53874 * 106.60171 * 336.39064 * 14 13 12 22 22 H 0.97004 * 119.99832 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47064 * 59.99843 * 9 7 2 24 24 H 1.09004 * 109.47365 * 300.00236 * 9 7 2 25 25 H 1.08998 * 110.76167 * 321.68739 * 12 10 9 26 26 H 1.08999 * 110.75723 * 85.07063 * 12 10 9 27 27 H 1.09002 * 110.48454 * 279.26851 * 13 12 10 28 28 H 1.08998 * 110.48753 * 156.62055 * 13 12 10 29 29 H 1.07994 * 127.04789 * 179.97438 * 18 17 16 30 30 H 1.07997 * 127.05071 * 179.97438 * 19 18 17 31 31 H 1.09004 * 110.03217 * 119.28070 * 21 14 13 32 32 H 1.08998 * 110.03744 * 240.66620 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0018 11 1 2.9661 -3.5474 0.8076 12 6 2.9694 -3.7545 -1.3678 13 6 3.4200 -5.2357 -1.4162 14 6 2.2488 -6.0085 -0.7752 15 1 2.6297 -6.8362 -0.1769 16 7 1.3513 -6.5141 -1.8169 17 7 1.0411 -7.7519 -1.9763 18 6 0.2199 -7.8527 -2.9968 19 6 0.0379 -6.5518 -3.4715 20 7 0.7661 -5.7806 -2.6961 21 6 1.5018 -5.0081 0.1241 22 1 -0.4850 0.8401 -0.0004 23 1 0.6239 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.2830 -3.5328 -2.1849 26 1 3.8313 -3.0877 -1.3939 27 1 4.3323 -5.3760 -0.8365 28 1 3.5691 -5.5556 -2.4475 29 1 -0.2235 -8.7563 -3.3884 30 1 -0.5748 -6.2432 -4.3056 31 1 0.4715 -4.8987 -0.2145 32 1 1.5201 -5.3501 1.1589 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260993311.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:40 Heat of formation + Delta-G solvation = 90.323136 kcal Electronic energy + Delta-G solvation = -14949.361848 eV Core-core repulsion = 12525.936533 eV Total energy + Delta-G solvation = -2423.425315 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.30688 -38.03421 -33.45138 -32.20299 -31.96816 -29.69207 -28.17898 -25.90233 -22.85763 -22.53900 -22.09092 -19.76810 -19.04834 -17.08948 -16.26185 -16.01981 -15.38419 -14.65337 -14.40217 -14.29076 -13.33782 -13.01210 -12.24938 -11.77400 -11.54967 -11.41983 -11.25285 -10.93185 -10.78053 -10.67205 -10.46972 -10.43279 -10.19809 -10.07264 -9.65868 -9.20943 -9.09344 -8.91235 -8.31787 -5.96569 -3.98291 2.11310 2.57441 2.69976 3.32513 3.40166 3.43631 4.34852 4.48034 4.81852 4.93192 5.06176 5.23473 5.39418 5.45646 5.68746 5.74305 5.88456 5.93357 6.01122 6.20860 6.25480 6.40567 6.43747 6.47656 6.85031 7.01272 7.06188 7.16997 7.69988 7.86478 8.03751 8.45693 8.63478 9.08547 9.65327 11.14874 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046892 B = 0.006584 C = 0.006258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.973730 B = 4251.392119 C = 4473.513804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.056 0.944 9 C 0.030 3.970 10 C -0.078 4.078 11 H 0.065 0.935 12 C -0.104 4.104 13 C -0.131 4.131 14 C 0.160 3.840 15 H 0.110 0.890 16 N -0.140 5.140 17 N -0.301 5.301 18 C -0.040 4.040 19 C -0.042 4.042 20 N -0.265 5.265 21 C -0.129 4.129 22 H 0.259 0.741 23 H 0.021 0.979 24 H 0.014 0.986 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.191 0.809 30 H 0.193 0.807 31 H 0.076 0.924 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.080 -13.228 -4.142 14.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.074 0.926 9 C -0.007 4.007 10 C -0.097 4.097 11 H 0.083 0.917 12 C -0.141 4.141 13 C -0.169 4.169 14 C 0.060 3.940 15 H 0.128 0.872 16 N -0.042 5.042 17 N -0.142 5.142 18 C -0.222 4.222 19 C -0.225 4.225 20 N -0.107 5.107 21 C -0.167 4.167 22 H 0.069 0.931 23 H 0.039 0.961 24 H 0.032 0.968 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.208 0.792 30 H 0.209 0.791 31 H 0.095 0.905 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.786 -12.646 -3.145 13.570 hybrid contribution -0.342 0.506 -0.753 0.969 sum 3.445 -12.140 -3.897 13.207 Atomic orbital electron populations 1.69982 1.06049 1.26367 1.51133 1.25022 0.94799 0.99184 0.95516 0.86579 0.80111 0.84048 0.77516 1.19777 1.21092 1.21125 1.21256 0.92973 0.90916 1.50065 0.92625 1.19129 0.93442 0.90814 0.97294 1.22058 0.97965 0.93488 0.96197 0.91670 1.22476 1.00366 0.92242 0.99047 1.22786 0.95824 0.97910 1.00427 1.22502 0.88420 0.97954 0.85075 0.87155 1.48518 1.32531 1.00465 1.22715 1.74001 1.16432 1.04159 1.19657 1.24685 1.01431 0.99797 0.96280 1.24819 1.03736 0.90821 1.03080 1.74204 1.09166 1.25748 1.01545 1.22729 1.00756 0.95449 0.97814 0.93141 0.96097 0.96816 0.90515 0.91398 0.89864 0.91585 0.79160 0.79052 0.90521 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.51 -14.31 8.77 -34.44 -0.30 -14.61 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.77 4.32 -27.89 -0.12 0.65 16 10 C -0.08 -1.55 2.80 -88.96 -0.25 -1.80 16 11 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 12 C -0.10 -1.90 5.99 -24.74 -0.15 -2.05 16 13 C -0.13 -1.92 6.36 -25.07 -0.16 -2.08 16 14 C 0.16 2.43 3.87 -66.81 -0.26 2.17 16 15 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 16 N -0.14 -2.30 3.60 -3.94 -0.01 -2.32 16 17 N -0.30 -4.69 12.05 30.67 0.37 -4.32 16 18 C -0.04 -0.51 12.20 -17.21 -0.21 -0.72 16 19 C -0.04 -0.59 12.20 -17.21 -0.21 -0.80 16 20 N -0.27 -4.61 11.54 30.67 0.35 -4.26 16 21 C -0.13 -2.21 6.06 -25.61 -0.16 -2.37 16 22 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.02 0.58 8.02 -51.93 -0.42 0.17 16 24 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 1.57 7.96 -51.93 -0.41 1.16 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 29 H 0.19 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.19 1.96 8.06 -52.49 -0.42 1.53 16 31 H 0.08 1.50 7.45 -51.93 -0.39 1.11 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 271.84 15.07 4.10 4.10 Total: -1.00 -32.02 271.84 -5.95 -37.97 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -4.56 Total: -1.33 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -1.91 Total: -20.11 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 1.45 Total: -37.28 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.02 -5.95 -37.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993311.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.290 kcal (2) G-P(sol) polarization free energy of solvation -32.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds