Wall clock time and date at job start Mon Mar 30 2020 03:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00241 * 2 1 4 4 H 1.48489 * 109.47290 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47162 * 300.00300 * 3 2 1 6 6 H 1.48505 * 109.47104 * 59.99524 * 3 2 1 7 7 C 1.37880 * 119.99409 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99576 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00592 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47429 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.43270 * 52.46179 * 10 9 7 12 12 C 1.54886 * 110.48378 * 289.77643 * 10 9 7 13 13 C 1.54892 * 102.74717 * 203.37778 * 12 10 9 14 14 C 1.54263 * 104.19544 * 37.94143 * 13 12 10 15 15 H 1.09000 * 110.07556 * 217.08331 * 14 13 12 16 16 N 1.46504 * 110.03081 * 95.67610 * 14 13 12 17 17 N 1.28597 * 124.61743 * 122.83749 * 16 14 13 18 18 C 1.31384 * 108.71793 * 179.97438 * 17 16 14 19 19 C 1.39673 * 105.89841 * 359.97438 * 18 17 16 20 20 N 1.28596 * 124.61801 * 302.80990 * 16 14 13 21 21 C 1.53874 * 106.60171 * 336.39064 * 14 13 12 22 22 H 0.97004 * 119.99832 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47064 * 59.99843 * 9 7 2 24 24 H 1.09004 * 109.47365 * 300.00236 * 9 7 2 25 25 H 1.08998 * 110.76167 * 321.68739 * 12 10 9 26 26 H 1.08999 * 110.75723 * 85.07063 * 12 10 9 27 27 H 1.09002 * 110.48454 * 279.26851 * 13 12 10 28 28 H 1.08998 * 110.48753 * 156.62055 * 13 12 10 29 29 H 1.07994 * 127.04789 * 179.97438 * 18 17 16 30 30 H 1.07997 * 127.05071 * 179.97438 * 19 18 17 31 31 H 1.09004 * 110.03217 * 119.28070 * 21 14 13 32 32 H 1.08998 * 110.03744 * 240.66620 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0018 11 1 2.9661 -3.5474 0.8076 12 6 2.9694 -3.7545 -1.3678 13 6 3.4200 -5.2357 -1.4162 14 6 2.2488 -6.0085 -0.7752 15 1 2.6297 -6.8362 -0.1769 16 7 1.3513 -6.5141 -1.8169 17 7 1.0411 -7.7519 -1.9763 18 6 0.2199 -7.8527 -2.9968 19 6 0.0379 -6.5518 -3.4715 20 7 0.7661 -5.7806 -2.6961 21 6 1.5018 -5.0081 0.1241 22 1 -0.4850 0.8401 -0.0004 23 1 0.6239 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.2830 -3.5328 -2.1849 26 1 3.8313 -3.0877 -1.3939 27 1 4.3323 -5.3760 -0.8365 28 1 3.5691 -5.5556 -2.4475 29 1 -0.2235 -8.7563 -3.3884 30 1 -0.5748 -6.2432 -4.3056 31 1 0.4715 -4.8987 -0.2145 32 1 1.5201 -5.3501 1.1589 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260993311.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:40 Heat of formation + Delta-G solvation = 69.723863 kcal Electronic energy + Delta-G solvation = -14950.255100 eV Core-core repulsion = 12525.936533 eV Total energy + Delta-G solvation = -2424.318566 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.41873 -39.44079 -35.34880 -33.63672 -33.25071 -31.30059 -29.55625 -27.67361 -24.55329 -23.70042 -23.47976 -21.04393 -20.62114 -18.65480 -17.97778 -17.24086 -16.65302 -16.55616 -15.58586 -15.52605 -14.82709 -14.44372 -14.28074 -13.54365 -13.25903 -12.77450 -12.70580 -12.47022 -12.33253 -12.28672 -12.03084 -11.86692 -11.63573 -11.36393 -11.24347 -11.08403 -10.99207 -10.53316 -10.15255 -8.17365 -6.27424 0.97385 1.40042 1.40575 1.48036 1.53639 1.67716 2.42149 3.16073 3.26716 3.53398 3.75792 3.89867 4.17978 4.26125 4.46092 4.49237 4.58962 4.66930 4.72479 4.80200 4.96101 5.03122 5.19135 5.29374 5.30959 5.41846 5.47386 5.55020 5.78542 5.89714 5.92278 6.27844 6.89906 7.41522 7.52560 8.95163 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046892 B = 0.006584 C = 0.006258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.973730 B = 4251.392119 C = 4473.513804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.005 4.005 3 Si 0.963 3.037 4 H -0.258 1.258 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.527 4.527 8 H 0.065 0.935 9 C 0.038 3.962 10 C -0.074 4.074 11 H 0.078 0.922 12 C -0.101 4.101 13 C -0.115 4.115 14 C 0.161 3.839 15 H 0.142 0.858 16 N -0.155 5.155 17 N -0.319 5.319 18 C -0.028 4.028 19 C -0.044 4.044 20 N -0.314 5.314 21 C -0.121 4.121 22 H 0.261 0.739 23 H -0.018 1.018 24 H -0.017 1.017 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.118 0.882 28 H 0.065 0.935 29 H 0.234 0.766 30 H 0.221 0.779 31 H 0.043 0.957 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.682 -14.429 -4.342 15.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.202 4.202 3 Si 0.788 3.212 4 H -0.182 1.182 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.565 4.565 8 H 0.083 0.917 9 C 0.001 3.999 10 C -0.093 4.093 11 H 0.096 0.904 12 C -0.139 4.139 13 C -0.153 4.153 14 C 0.062 3.938 15 H 0.160 0.840 16 N -0.057 5.057 17 N -0.160 5.160 18 C -0.210 4.210 19 C -0.226 4.226 20 N -0.155 5.155 21 C -0.160 4.160 22 H 0.070 0.930 23 H 0.000 1.000 24 H 0.001 0.999 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.136 0.864 28 H 0.084 0.916 29 H 0.250 0.750 30 H 0.238 0.762 31 H 0.062 0.938 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.410 -13.856 -3.336 15.244 hybrid contribution -0.954 0.840 -0.745 1.474 sum 4.456 -13.016 -4.081 14.350 Atomic orbital electron populations 1.70133 1.07977 1.27472 1.52385 1.26008 0.95680 1.03447 0.95092 0.85419 0.79301 0.78924 0.77539 1.18161 1.20806 1.20542 1.21688 0.93580 0.91900 1.49324 0.91671 1.18971 0.93864 0.93193 0.93905 1.21897 0.97029 0.92638 0.97706 0.90401 1.22334 0.99403 0.95359 0.96774 1.22704 0.96931 0.94494 1.01178 1.22539 0.87886 0.98386 0.84985 0.84003 1.48566 1.33385 1.00650 1.23125 1.73972 1.17391 1.03813 1.20774 1.25409 0.99879 1.00825 0.94861 1.25448 1.02916 0.91166 1.03063 1.74186 1.10862 1.27499 1.02978 1.22582 0.98787 0.94860 0.99782 0.93025 0.99975 0.99854 0.93718 0.91374 0.86382 0.91590 0.74987 0.76235 0.93779 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.71 13.29 21.45 0.28 -58.43 16 2 C -0.01 -0.32 5.46 84.66 0.46 0.15 16 3 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.53 -29.94 8.77 25.60 0.22 -29.72 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.04 2.03 4.32 29.85 0.13 2.16 16 10 C -0.07 -2.96 2.80 -9.72 -0.03 -2.99 16 11 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 12 C -0.10 -3.69 5.99 31.89 0.19 -3.50 16 13 C -0.11 -3.14 6.36 31.67 0.20 -2.94 16 14 C 0.16 4.62 3.87 45.71 0.18 4.80 16 15 H 0.14 3.16 8.14 -2.39 -0.02 3.14 16 16 N -0.16 -4.97 3.60 -166.39 -0.60 -5.57 16 17 N -0.32 -9.30 12.05 -56.87 -0.69 -9.99 16 18 C -0.03 -0.64 12.20 85.11 1.04 0.40 16 19 C -0.04 -1.16 12.20 85.11 1.04 -0.12 16 20 N -0.31 -10.91 11.54 -56.87 -0.66 -11.57 16 21 C -0.12 -4.16 6.06 31.32 0.19 -3.97 16 22 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 23 H -0.02 -1.10 8.02 -2.39 -0.02 -1.12 16 24 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 25 H 0.04 1.90 7.96 -2.39 -0.02 1.88 16 26 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.12 2.43 8.14 -2.39 -0.02 2.42 16 28 H 0.07 1.84 8.04 -2.39 -0.02 1.82 16 29 H 0.23 3.06 8.06 -2.91 -0.02 3.03 16 30 H 0.22 4.11 8.06 -2.91 -0.02 4.08 16 31 H 0.04 1.79 7.45 -2.38 -0.02 1.77 16 32 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -72.19 271.84 5.08 -67.11 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 1.09 Total: 7.36 kcal Atomic # 6 Polarization: -39.35 SS G_CDS: 3.62 Total: -35.73 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -1.66 Total: -85.55 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -72.19 5.08 -67.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993311.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.831 kcal (2) G-P(sol) polarization free energy of solvation -72.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds