Wall clock time and date at job start Mon Mar 30 2020 03:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34879 * 126.11455 * 2 1 4 4 H 0.97007 * 126.03134 * 0.02562 * 3 2 1 5 5 N 1.40016 * 107.94037 * 180.02562 * 3 2 1 6 6 C 1.31043 * 108.24618 * 359.97438 * 5 3 2 7 7 C 1.35352 * 126.05139 * 179.97438 * 2 1 3 8 8 C 1.51285 * 142.66072 * 0.23371 * 7 2 1 9 9 C 1.50707 * 110.29116 * 281.57340 * 8 7 2 10 10 H 1.07997 * 119.99566 * 147.21925 * 9 8 7 11 11 C 1.37874 * 120.00146 * 327.22511 * 9 8 7 12 12 N 1.31513 * 119.99759 * 349.27302 * 11 9 8 13 13 Si 1.86801 * 120.00142 * 169.27886 * 11 9 8 14 14 H 1.48506 * 109.47078 * 89.99600 * 13 11 9 15 15 H 1.48497 * 109.46899 * 209.99727 * 13 11 9 16 16 H 1.48498 * 109.47125 * 329.99890 * 13 11 9 17 17 C 1.52997 * 110.29511 * 43.60521 * 8 7 2 18 18 N 1.46902 * 109.47129 * 177.88108 * 17 8 7 19 19 C 1.54338 * 105.29962 * 162.59256 * 8 7 2 20 20 C 1.51325 * 142.36030 * 180.02562 * 6 5 3 21 21 H 1.08998 * 109.47302 * 89.97745 * 1 2 3 22 22 H 1.09008 * 109.47090 * 209.97424 * 1 2 3 23 23 H 1.08997 * 109.47206 * 329.97329 * 1 2 3 24 24 H 0.97005 * 119.99698 * 180.02562 * 12 11 9 25 25 H 1.09000 * 109.47088 * 57.88240 * 17 8 7 26 26 H 1.09005 * 109.47095 * 297.88230 * 17 8 7 27 27 H 1.00904 * 110.99647 * 173.75053 * 18 17 8 28 28 H 1.00899 * 110.99745 * 297.69950 * 18 17 8 29 29 H 1.08999 * 110.77009 * 144.77838 * 19 8 7 30 30 H 1.09004 * 110.76975 * 267.99803 * 19 8 7 31 31 H 1.08997 * 110.29071 * 78.26760 * 20 6 5 32 32 H 1.08993 * 110.37498 * 316.17958 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3020 1.0896 0.0000 4 1 2.0046 2.0130 0.0004 5 7 3.6323 0.6529 -0.0006 6 6 3.6339 -0.6575 -0.0004 7 6 2.3035 -1.0943 0.0005 8 6 2.2696 -2.6068 -0.0026 9 6 1.9697 -3.1256 1.3802 10 1 1.4057 -4.0382 1.5039 11 6 2.4154 -2.4351 2.4873 12 7 3.2740 -1.4491 2.3455 13 14 1.7998 -2.9003 4.1885 14 1 2.6972 -3.9274 4.7760 15 1 1.7898 -1.6962 5.0575 16 1 0.4231 -3.4471 4.0843 17 6 1.2221 -3.1120 -0.9967 18 7 1.2395 -4.5807 -1.0223 19 6 3.6820 -3.0450 -0.4441 20 6 4.5596 -1.8547 -0.0002 21 1 -0.3634 0.0004 -1.0276 22 1 -0.3634 -0.8903 0.5135 23 1 -0.3633 0.8897 0.5142 24 1 3.5879 -0.9636 3.1245 25 1 1.4503 -2.7286 -1.9912 26 1 0.2346 -2.7656 -0.6915 27 1 0.4898 -4.9413 -1.5933 28 1 2.1332 -4.9262 -1.3385 29 1 3.9819 -3.9580 0.0701 30 1 3.7246 -3.1801 -1.5249 31 1 4.9553 -2.0264 1.0007 32 1 5.3748 -1.7040 -0.7078 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260994017.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:34 Heat of formation + Delta-G solvation = 66.454289 kcal Electronic energy + Delta-G solvation = -16011.390403 eV Core-core repulsion = 13586.930058 eV Total energy + Delta-G solvation = -2424.460346 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.94935 -38.07791 -34.59166 -33.75196 -32.50826 -29.93590 -29.39945 -27.09438 -25.91055 -23.98236 -22.04342 -20.01568 -19.80384 -17.81283 -17.15827 -16.72643 -16.13366 -15.67502 -15.08299 -14.82694 -14.62586 -13.83294 -13.71901 -13.40833 -13.29199 -13.09374 -12.79400 -12.63188 -12.33083 -12.22841 -12.04912 -11.55298 -11.11901 -10.91533 -10.45782 -10.18480 -9.50786 -9.15174 -8.64073 -7.57496 -5.88007 1.42206 1.47759 1.54543 1.56196 2.48201 2.58504 2.63641 3.41485 3.83642 4.17509 4.30696 4.54181 4.58626 4.67815 4.74775 4.85255 4.86960 5.07114 5.17769 5.23244 5.28351 5.52973 5.71384 5.80090 5.93558 6.01906 6.16047 6.39253 6.55804 6.77739 6.99797 7.06578 7.19292 7.44608 7.73768 9.13304 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.020692 B = 0.016417 C = 0.013607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.866812 B = 1705.119344 C = 2057.202462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.048 3.952 3 N -0.495 5.495 4 H 0.434 0.566 5 N -0.350 5.350 6 C 0.110 3.890 7 C -0.186 4.186 8 C 0.133 3.867 9 C -0.484 4.484 10 H 0.057 0.943 11 C 0.028 3.972 12 N -0.876 5.876 13 Si 0.926 3.074 14 H -0.286 1.286 15 H -0.303 1.303 16 H -0.275 1.275 17 C 0.093 3.907 18 N -0.843 5.843 19 C -0.096 4.096 20 C -0.009 4.009 21 H 0.086 0.914 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.239 0.761 25 H 0.006 0.994 26 H 0.053 0.947 27 H 0.339 0.661 28 H 0.339 0.661 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.132 -0.068 -6.946 8.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.076 4.076 3 N -0.206 5.206 4 H 0.278 0.722 5 N -0.174 5.174 6 C -0.057 4.057 7 C -0.197 4.197 8 C 0.131 3.869 9 C -0.523 4.523 10 H 0.076 0.924 11 C -0.171 4.171 12 N -0.515 5.515 13 Si 0.755 3.245 14 H -0.212 1.212 15 H -0.230 1.230 16 H -0.200 1.200 17 C -0.038 4.038 18 N -0.373 5.373 19 C -0.135 4.135 20 C -0.049 4.049 21 H 0.104 0.896 22 H 0.087 0.913 23 H 0.092 0.908 24 H 0.049 0.951 25 H 0.024 0.976 26 H 0.071 0.929 27 H 0.151 0.849 28 H 0.152 0.848 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.463 1.136 -6.039 7.054 hybrid contribution -0.556 0.043 0.598 0.817 sum -4.018 1.178 -5.442 6.866 Atomic orbital electron populations 1.20276 0.86631 1.03058 1.03004 1.20271 0.94569 0.87308 1.05449 1.45846 1.02937 1.07393 1.64456 0.72163 1.76590 0.97549 1.12270 1.30985 1.22879 0.98415 0.91077 0.93305 1.20769 0.92644 0.96914 1.09411 1.17253 0.90872 0.85292 0.93459 1.21137 1.33015 1.08037 0.90102 0.92443 1.25418 0.95473 0.95712 1.00515 1.70280 1.30697 1.22791 1.27718 0.86084 0.78982 0.76522 0.82910 1.21217 1.23046 1.19963 1.21655 0.99268 0.87599 0.95241 1.58489 1.08630 1.08434 1.61748 1.22406 0.97012 0.96517 0.97542 1.20358 0.94697 0.88909 1.00893 0.89567 0.91323 0.90819 0.95071 0.97557 0.92871 0.84900 0.84785 0.92043 0.92923 0.90617 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.29 10.28 71.24 0.73 -1.56 16 2 C 0.05 2.03 7.20 41.42 0.30 2.33 16 3 N -0.49 -20.31 7.35 -48.02 -0.35 -20.67 16 4 H 0.43 14.29 8.96 -213.37 -1.91 12.37 16 5 N -0.35 -16.81 12.70 -46.69 -0.59 -17.40 16 6 C 0.11 5.38 6.21 43.31 0.27 5.65 16 7 C -0.19 -8.66 4.00 -19.91 -0.08 -8.74 16 8 C 0.13 5.96 0.61 -53.03 -0.03 5.93 16 9 C -0.48 -24.64 7.80 25.60 0.20 -24.44 16 10 H 0.06 3.02 7.51 -2.91 -0.02 3.00 16 11 C 0.03 1.49 5.15 84.65 0.44 1.92 16 12 N -0.88 -48.05 7.64 21.45 0.16 -47.88 16 13 Si 0.93 43.85 29.55 68.60 2.03 45.88 16 14 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 15 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 16 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 17 C 0.09 3.53 5.66 86.30 0.49 4.01 16 18 N -0.84 -27.87 8.95 -186.71 -1.67 -29.54 16 19 C -0.10 -4.03 5.16 31.52 0.16 -3.87 16 20 C -0.01 -0.41 6.10 30.52 0.19 -0.23 16 21 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 22 H 0.07 2.42 7.81 -2.38 -0.02 2.40 16 23 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.24 13.47 8.31 -92.70 -0.77 12.69 16 25 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 26 H 0.05 2.04 7.65 -2.38 -0.02 2.02 16 27 H 0.34 9.04 9.08 -89.69 -0.81 8.23 16 28 H 0.34 10.44 8.18 -89.69 -0.73 9.71 16 29 H 0.06 2.61 7.89 -2.39 -0.02 2.59 16 30 H 0.05 1.92 7.90 -2.38 -0.02 1.90 16 31 H 0.08 3.81 6.75 -2.39 -0.02 3.79 16 32 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -62.20 258.28 -0.07 -62.27 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: -2.30 Total: 26.34 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 2.66 Total: -18.99 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -2.45 Total: -115.50 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -62.20 -0.07 -62.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260994017.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.722 kcal (2) G-P(sol) polarization free energy of solvation -62.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds