Wall clock time and date at job start Mon Mar 30 2020 03:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34885 * 126.11177 * 2 1 4 4 H 0.97006 * 126.03048 * 0.04383 * 3 2 1 5 5 N 1.40020 * 107.93958 * 180.02562 * 3 2 1 6 6 C 1.31043 * 108.24347 * 0.02562 * 5 3 2 7 7 C 1.35460 * 126.11325 * 180.02562 * 2 1 3 8 8 C 1.51573 * 142.45875 * 359.79519 * 7 2 1 9 9 C 1.50696 * 110.24954 * 78.32137 * 8 7 2 10 10 H 1.08002 * 120.00095 * 348.78545 * 9 8 7 11 11 C 1.37879 * 120.00222 * 168.79280 * 9 8 7 12 12 N 1.31513 * 120.00381 * 186.19715 * 11 9 8 13 13 Si 1.86800 * 119.99652 * 6.19014 * 11 9 8 14 14 H 1.48496 * 109.46999 * 95.79483 * 13 11 9 15 15 H 1.48500 * 109.46999 * 215.79466 * 13 11 9 16 16 H 1.48503 * 109.47126 * 335.79646 * 13 11 9 17 17 C 1.53002 * 110.47214 * 316.09920 * 8 7 2 18 18 N 1.46904 * 109.46834 * 177.74165 * 17 8 7 19 19 C 1.54343 * 105.07235 * 197.15525 * 8 7 2 20 20 C 1.51325 * 142.35982 * 179.97438 * 6 5 3 21 21 H 1.08996 * 109.47359 * 89.98078 * 1 2 3 22 22 H 1.09001 * 109.46896 * 209.97669 * 1 2 3 23 23 H 1.08997 * 109.47786 * 329.97590 * 1 2 3 24 24 H 0.96994 * 120.00459 * 179.97438 * 12 11 9 25 25 H 1.08996 * 109.47367 * 297.74425 * 17 8 7 26 26 H 1.09005 * 109.47244 * 57.74768 * 17 8 7 27 27 H 1.00899 * 110.99362 * 173.11579 * 18 17 8 28 28 H 1.00900 * 111.00217 * 297.07373 * 18 17 8 29 29 H 1.08998 * 110.76528 * 215.30731 * 19 8 7 30 30 H 1.08996 * 110.77232 * 92.08653 * 19 8 7 31 31 H 1.08999 * 110.29577 * 43.87232 * 20 6 5 32 32 H 1.09007 * 110.37342 * 281.79349 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3020 1.0897 0.0000 4 1 2.0045 2.0130 0.0006 5 7 3.6323 0.6530 -0.0006 6 6 3.6340 -0.6574 -0.0015 7 6 2.3054 -1.0943 -0.0005 8 6 2.2676 -2.6096 0.0021 9 6 1.9645 -3.1262 -1.3807 10 1 1.6342 -2.4452 -2.1512 11 6 2.1087 -4.4682 -1.6623 12 7 1.9630 -4.9007 -2.8957 13 14 2.5112 -5.6720 -0.2918 14 1 1.2572 -6.2914 0.2070 15 1 3.4134 -6.7306 -0.8121 16 1 3.1831 -4.9509 0.8190 17 6 1.2246 -3.1171 0.9999 18 7 1.1683 -4.5841 0.9456 19 6 3.6825 -3.0456 0.4384 20 6 4.5596 -1.8545 -0.0029 21 1 -0.3634 0.0003 -1.0276 22 1 -0.3633 -0.8902 0.5135 23 1 -0.3634 0.8897 0.5142 24 1 2.0648 -5.8447 -3.0939 25 1 1.5003 -2.8011 2.0060 26 1 0.2477 -2.7064 0.7449 27 1 0.5705 -4.9500 1.6713 28 1 0.8684 -4.9011 0.0358 29 1 3.9820 -3.9578 -0.0776 30 1 3.7292 -3.1812 1.5188 31 1 5.3743 -1.7033 0.7051 32 1 4.9563 -2.0263 -1.0036 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260994018.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:37 Heat of formation + Delta-G solvation = 148.207923 kcal Electronic energy + Delta-G solvation = -15895.446367 eV Core-core repulsion = 13474.531124 eV Total energy + Delta-G solvation = -2420.915242 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.94417 -37.23206 -33.82621 -31.97958 -31.74343 -28.93941 -28.17695 -26.01234 -24.65316 -22.82540 -21.02629 -19.00548 -18.00184 -17.15464 -16.42948 -15.28461 -14.74911 -14.39259 -13.95217 -13.69156 -13.28017 -12.91731 -12.67384 -12.21401 -12.19124 -11.74866 -11.29925 -10.98219 -10.69865 -10.36396 -10.26029 -9.66547 -9.45211 -9.04968 -8.99294 -8.52421 -8.26043 -7.45811 -7.04804 -5.95894 -4.03511 2.48160 3.36684 3.53265 3.57976 3.78424 4.10011 4.62535 4.87378 5.16121 5.26907 5.44525 5.49980 5.82881 5.87495 5.92812 6.09315 6.16143 6.25369 6.39726 6.48028 6.63833 6.71632 6.82695 6.94184 7.17256 7.29259 7.32892 7.58339 7.78153 7.89505 7.93837 8.39277 8.60297 9.01790 9.59028 11.11136 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034349 B = 0.012521 C = 0.011678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.960979 B = 2235.718950 C = 2397.003155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.072 3.928 3 N -0.489 5.489 4 H 0.430 0.570 5 N -0.299 5.299 6 C 0.059 3.941 7 C -0.194 4.194 8 C 0.120 3.880 9 C -0.505 4.505 10 H 0.067 0.933 11 C 0.031 3.969 12 N -0.900 5.900 13 Si 1.026 2.974 14 H -0.351 1.351 15 H -0.359 1.359 16 H -0.269 1.269 17 C 0.055 3.945 18 N -0.819 5.819 19 C -0.100 4.100 20 C -0.028 4.028 21 H 0.075 0.925 22 H 0.082 0.918 23 H 0.057 0.943 24 H 0.263 0.737 25 H 0.050 0.950 26 H 0.031 0.969 27 H 0.334 0.666 28 H 0.362 0.638 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.299 6.049 8.187 10.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.054 4.054 3 N -0.199 5.199 4 H 0.273 0.727 5 N -0.122 5.122 6 C -0.108 4.108 7 C -0.206 4.206 8 C 0.117 3.883 9 C -0.543 4.543 10 H 0.085 0.915 11 C -0.170 4.170 12 N -0.536 5.536 13 Si 0.882 3.118 14 H -0.290 1.290 15 H -0.297 1.297 16 H -0.199 1.199 17 C -0.075 4.075 18 N -0.367 5.367 19 C -0.138 4.138 20 C -0.067 4.067 21 H 0.094 0.906 22 H 0.101 0.899 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.151 0.849 28 H 0.186 0.814 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.824 7.030 8.129 10.779 hybrid contribution -1.744 -0.535 0.329 1.854 sum -2.568 6.495 8.459 10.970 Atomic orbital electron populations 1.20351 0.88113 1.02614 1.02994 1.20050 0.93637 0.87275 1.04402 1.46139 1.03635 1.07338 1.62782 0.72739 1.76866 0.96077 1.11642 1.27600 1.23314 0.98145 0.91413 0.97926 1.20865 0.92286 0.96777 1.10629 1.17554 0.91013 0.84614 0.95096 1.20733 1.46300 0.93617 0.93678 0.91459 1.25738 0.94671 0.99413 0.97157 1.69977 1.49033 1.15330 1.19273 0.83926 0.74570 0.75773 0.77485 1.29015 1.29704 1.19886 1.22233 0.99203 0.87389 0.98628 1.60157 1.54064 1.11180 1.11262 1.23000 0.95748 0.96120 0.98915 1.20637 0.95489 0.88505 1.02086 0.90641 0.89885 0.92379 0.92816 0.93200 0.95085 0.84938 0.81379 0.89954 0.92944 0.91906 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 10.43 36.01 0.38 -0.80 16 2 C 0.07 1.32 7.21 -82.24 -0.59 0.73 16 3 N -0.49 -8.43 7.35 33.49 0.25 -8.18 16 4 H 0.43 5.58 8.96 -182.65 -1.64 3.94 16 5 N -0.30 -6.09 12.70 33.86 0.43 -5.66 16 6 C 0.06 1.26 8.10 -82.02 -0.66 0.60 16 7 C -0.19 -4.17 5.39 -104.58 -0.56 -4.73 16 8 C 0.12 2.70 0.55 -155.68 -0.09 2.61 16 9 C -0.51 -13.64 8.56 -34.44 -0.29 -13.94 16 10 H 0.07 2.06 8.02 -52.49 -0.42 1.64 16 11 C 0.03 0.86 4.89 -17.82 -0.09 0.77 16 12 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 13 Si 1.03 24.72 20.19 -169.99 -3.43 21.28 16 14 H -0.35 -8.07 5.88 56.52 0.33 -7.74 16 15 H -0.36 -9.32 7.11 56.52 0.40 -8.92 16 16 H -0.27 -6.09 3.92 56.52 0.22 -5.87 16 17 C 0.05 1.09 5.71 -3.82 -0.02 1.07 16 18 N -0.82 -16.56 3.66 -10.36 -0.04 -16.60 16 19 C -0.10 -2.15 4.00 -25.32 -0.10 -2.25 16 20 C -0.03 -0.56 6.76 -26.87 -0.18 -0.74 16 21 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 22 H 0.08 1.20 6.37 -51.93 -0.33 0.87 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.05 0.92 8.05 -51.93 -0.42 0.50 16 26 H 0.03 0.59 6.37 -51.93 -0.33 0.26 16 27 H 0.33 5.60 9.06 -39.29 -0.36 5.25 16 28 H 0.36 8.11 3.81 -39.29 -0.15 7.96 16 29 H 0.08 1.89 4.12 -51.93 -0.21 1.67 16 30 H 0.05 1.05 7.61 -51.93 -0.40 0.66 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 LS Contribution 239.62 15.07 3.61 3.61 Total: -1.00 -32.28 239.62 -5.95 -38.24 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -5.33 Total: 10.22 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -2.22 Total: -16.68 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 1.41 Total: -56.67 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -3.43 Total: 21.28 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -32.28 -5.95 -38.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260994018.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.443 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds