Wall clock time and date at job start Mon Mar 30 2020 03:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00029 * 2 1 4 4 H 1.48505 * 109.47024 * 239.99666 * 3 2 1 5 5 H 1.48499 * 109.47106 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47281 * 119.99873 * 3 2 1 7 7 C 1.37881 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99802 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99903 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47156 * 179.97438 * 9 7 2 11 11 H 1.08995 * 110.02130 * 54.93306 * 10 9 7 12 12 C 1.54265 * 110.03213 * 293.54025 * 10 9 7 13 13 C 1.54887 * 104.20056 * 217.05730 * 12 10 9 14 14 C 1.54890 * 102.91108 * 37.84875 * 13 12 10 15 15 H 1.09003 * 110.48855 * 80.83451 * 14 13 12 16 16 N 1.46505 * 110.48380 * 203.47245 * 14 13 12 17 17 C 1.35489 * 126.98157 * 58.23268 * 16 14 13 18 18 N 1.30525 * 107.30861 * 179.83374 * 17 16 14 19 19 N 1.28596 * 109.66735 * 0.44129 * 18 17 16 20 20 C 1.30520 * 109.67748 * 359.72069 * 19 18 17 21 21 C 1.53877 * 110.07490 * 176.35134 * 10 9 7 22 22 H 0.96994 * 119.99888 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47480 * 59.98854 * 9 7 2 24 24 H 1.09012 * 109.47063 * 299.99462 * 9 7 2 25 25 H 1.09004 * 110.48891 * 98.37703 * 12 10 9 26 26 H 1.09004 * 110.59809 * 335.79343 * 12 10 9 27 27 H 1.09002 * 110.75856 * 156.25785 * 13 12 10 28 28 H 1.09006 * 110.75640 * 279.44771 * 13 12 10 29 29 H 1.08000 * 126.34524 * 359.97438 * 17 16 14 30 30 H 1.08003 * 126.34493 * 180.02562 * 20 19 18 31 31 H 1.08999 * 110.03493 * 238.58864 * 21 10 9 32 32 H 1.08997 * 110.03317 * 0.02562 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9350 -3.5634 0.8387 12 6 3.0286 -3.6876 -1.3282 13 6 3.1980 -5.1951 -1.6405 14 6 1.8464 -5.7974 -1.1825 15 1 1.0840 -5.6493 -1.9473 16 7 1.9975 -7.2222 -0.8766 17 6 2.8369 -7.7763 0.0312 18 7 2.6544 -9.0681 -0.0090 19 7 1.7619 -9.3519 -0.8903 20 6 1.3303 -8.2537 -1.4481 21 6 1.4922 -5.0008 0.0925 22 1 -0.4850 0.8400 0.0004 23 1 0.6246 -2.5570 -0.8895 24 1 0.6241 -2.5567 0.8904 25 1 4.0017 -3.2115 -1.2066 26 1 2.4604 -3.1958 -2.1178 27 1 3.3496 -5.3538 -2.7082 28 1 4.0233 -5.6180 -1.0676 29 1 3.5273 -7.2471 0.6712 30 1 0.5800 -8.1807 -2.2216 31 1 1.8164 -5.5517 0.9754 32 1 0.4178 -4.8225 0.1367 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261000343.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:00 Heat of formation + Delta-G solvation = 57.600529 kcal Electronic energy + Delta-G solvation = -14716.693593 eV Core-core repulsion = 12291.849319 eV Total energy + Delta-G solvation = -2424.844274 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.03175 -38.38630 -34.31569 -32.69503 -30.50813 -29.93275 -28.29174 -25.97995 -23.09901 -22.32555 -22.22690 -20.32297 -19.14413 -17.51031 -16.41887 -15.71560 -15.15029 -15.09423 -14.59436 -14.17897 -13.72902 -13.20262 -12.59591 -12.22164 -11.95774 -11.62588 -11.35578 -11.05249 -10.92941 -10.73783 -10.64273 -10.40775 -10.32407 -9.96752 -9.82836 -9.36900 -9.29032 -9.12356 -8.44596 -6.09613 -4.12407 1.90656 2.57810 2.96464 3.26129 3.31788 3.33311 4.37105 4.47071 4.59978 4.63106 4.67410 4.95423 5.26482 5.33212 5.39671 5.49921 5.64158 5.72493 5.85306 5.95388 6.00238 6.16602 6.26083 6.31955 6.65159 6.76528 6.92177 6.99941 7.52999 7.65205 7.88273 8.30415 8.77469 8.93888 9.52522 11.01497 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.072583 B = 0.005473 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.673813 B = 5114.830830 C = 5235.825941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.029 3.971 10 C -0.082 4.082 11 H 0.065 0.935 12 C -0.103 4.103 13 C -0.132 4.132 14 C 0.124 3.876 15 H 0.111 0.889 16 N -0.460 5.460 17 C 0.155 3.845 18 N -0.307 5.307 19 N -0.308 5.308 20 C 0.146 3.854 21 C -0.128 4.128 22 H 0.262 0.738 23 H 0.018 0.982 24 H 0.016 0.984 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.213 0.787 30 H 0.214 0.786 31 H 0.063 0.937 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.812 -9.097 -3.404 10.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.101 4.101 11 H 0.083 0.917 12 C -0.141 4.141 13 C -0.171 4.171 14 C 0.021 3.979 15 H 0.129 0.871 16 N -0.149 5.149 17 C -0.134 4.134 18 N -0.147 5.147 19 N -0.148 5.148 20 C -0.142 4.142 21 C -0.166 4.166 22 H 0.071 0.929 23 H 0.036 0.964 24 H 0.034 0.966 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.230 0.770 30 H 0.231 0.769 31 H 0.082 0.918 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.792 -10.430 -3.088 11.519 hybrid contribution 0.200 2.480 -0.305 2.507 sum 3.992 -7.949 -3.392 9.520 Atomic orbital electron populations 1.69940 1.06072 1.26823 1.50618 1.25012 0.94807 0.99247 0.95268 0.86688 0.79621 0.83248 0.78632 1.20244 1.21301 1.20247 1.21166 0.92962 0.90882 1.50834 0.92663 1.19226 0.93363 0.90962 0.97253 1.21820 0.97901 0.93661 0.96733 0.91694 1.22293 1.01036 0.92053 0.98678 1.22953 0.94798 0.98189 1.01138 1.22760 1.00375 0.74591 1.00140 0.87069 1.46750 1.29596 1.09463 1.29136 1.26343 0.98546 0.91677 0.96785 1.74222 1.13530 1.11335 1.15653 1.74191 1.09450 1.23730 1.07408 1.26484 1.01667 0.83409 1.02631 1.22750 1.02414 0.96871 0.94599 0.92884 0.96408 0.96577 0.91373 0.90601 0.91223 0.91112 0.77035 0.76910 0.91812 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.65 13.29 55.43 0.74 -24.91 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -13.50 8.66 -34.44 -0.30 -13.80 16 8 H 0.06 1.39 7.68 -52.49 -0.40 0.98 16 9 C 0.03 0.67 4.11 -27.89 -0.11 0.55 16 10 C -0.08 -1.41 2.89 -89.50 -0.26 -1.67 16 11 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 12 C -0.10 -1.55 5.84 -25.07 -0.15 -1.70 16 13 C -0.13 -1.56 6.48 -24.74 -0.16 -1.72 16 14 C 0.12 1.47 3.64 -66.16 -0.24 1.23 16 15 H 0.11 1.19 8.12 -51.93 -0.42 0.77 16 16 N -0.46 -5.64 2.71 -110.95 -0.30 -5.94 16 17 C 0.15 2.01 11.15 -89.95 -1.00 1.01 16 18 N -0.31 -4.89 12.21 29.69 0.36 -4.53 16 19 N -0.31 -4.82 12.21 29.69 0.36 -4.46 16 20 C 0.15 1.81 12.73 -89.95 -1.14 0.66 16 21 C -0.13 -1.81 6.14 -25.51 -0.16 -1.97 16 22 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 23 H 0.02 0.43 8.04 -51.93 -0.42 0.01 16 24 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.08 1.25 7.79 -51.93 -0.40 0.84 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.79 7.58 -51.93 -0.39 0.40 16 29 H 0.21 2.12 8.06 -52.49 -0.42 1.70 16 30 H 0.21 1.76 8.06 -52.48 -0.42 1.34 16 31 H 0.06 0.86 7.30 -51.93 -0.38 0.48 16 32 H 0.08 1.17 7.67 -51.93 -0.40 0.77 16 LS Contribution 269.54 15.07 4.06 4.06 Total: -1.00 -30.54 269.54 -7.91 -38.45 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -4.49 Total: -2.37 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -3.62 Total: -15.94 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 1.16 Total: -39.84 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.54 -7.91 -38.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261000343.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.052 kcal (2) G-P(sol) polarization free energy of solvation -30.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds