Wall clock time and date at job start Mon Mar 30 2020 03:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00029 * 2 1 4 4 H 1.48505 * 109.47024 * 239.99666 * 3 2 1 5 5 H 1.48499 * 109.47106 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47281 * 119.99873 * 3 2 1 7 7 C 1.37881 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99802 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99903 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47156 * 179.97438 * 9 7 2 11 11 H 1.08995 * 110.02130 * 54.93306 * 10 9 7 12 12 C 1.54265 * 110.03213 * 293.54025 * 10 9 7 13 13 C 1.54887 * 104.20056 * 217.05730 * 12 10 9 14 14 C 1.54890 * 102.91108 * 37.84875 * 13 12 10 15 15 H 1.09003 * 110.48855 * 80.83451 * 14 13 12 16 16 N 1.46505 * 110.48380 * 203.47245 * 14 13 12 17 17 C 1.35489 * 126.98157 * 58.23268 * 16 14 13 18 18 N 1.30525 * 107.30861 * 179.83374 * 17 16 14 19 19 N 1.28596 * 109.66735 * 0.44129 * 18 17 16 20 20 C 1.30520 * 109.67748 * 359.72069 * 19 18 17 21 21 C 1.53877 * 110.07490 * 176.35134 * 10 9 7 22 22 H 0.96994 * 119.99888 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47480 * 59.98854 * 9 7 2 24 24 H 1.09012 * 109.47063 * 299.99462 * 9 7 2 25 25 H 1.09004 * 110.48891 * 98.37703 * 12 10 9 26 26 H 1.09004 * 110.59809 * 335.79343 * 12 10 9 27 27 H 1.09002 * 110.75856 * 156.25785 * 13 12 10 28 28 H 1.09006 * 110.75640 * 279.44771 * 13 12 10 29 29 H 1.08000 * 126.34524 * 359.97438 * 17 16 14 30 30 H 1.08003 * 126.34493 * 180.02562 * 20 19 18 31 31 H 1.08999 * 110.03493 * 238.58864 * 21 10 9 32 32 H 1.08997 * 110.03317 * 0.02562 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9350 -3.5634 0.8387 12 6 3.0286 -3.6876 -1.3282 13 6 3.1980 -5.1951 -1.6405 14 6 1.8464 -5.7974 -1.1825 15 1 1.0840 -5.6493 -1.9473 16 7 1.9975 -7.2222 -0.8766 17 6 2.8369 -7.7763 0.0312 18 7 2.6544 -9.0681 -0.0090 19 7 1.7619 -9.3519 -0.8903 20 6 1.3303 -8.2537 -1.4481 21 6 1.4922 -5.0008 0.0925 22 1 -0.4850 0.8400 0.0004 23 1 0.6246 -2.5570 -0.8895 24 1 0.6241 -2.5567 0.8904 25 1 4.0017 -3.2115 -1.2066 26 1 2.4604 -3.1958 -2.1178 27 1 3.3496 -5.3538 -2.7082 28 1 4.0233 -5.6180 -1.0676 29 1 3.5273 -7.2471 0.6712 30 1 0.5800 -8.1807 -2.2216 31 1 1.8164 -5.5517 0.9754 32 1 0.4178 -4.8225 0.1367 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261000343.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:59 Heat of formation + Delta-G solvation = 42.077348 kcal Electronic energy + Delta-G solvation = -14717.366728 eV Core-core repulsion = 12291.849319 eV Total energy + Delta-G solvation = -2425.517409 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.03749 -39.58068 -35.72710 -34.40356 -31.57717 -31.38426 -29.47468 -27.57063 -24.55239 -23.68392 -23.22467 -21.36052 -20.50375 -18.61352 -18.29278 -16.77801 -16.64209 -16.13919 -15.97984 -15.26396 -15.02546 -14.42152 -14.27923 -13.76912 -13.34928 -13.07509 -12.77287 -12.61937 -12.34956 -12.15766 -12.04255 -11.76716 -11.42093 -11.27619 -11.19975 -11.02232 -10.76175 -10.50171 -10.38005 -8.16558 -6.25515 0.95644 1.42577 1.43516 1.51187 1.61279 1.93907 2.43085 3.17874 3.47986 3.55771 3.73320 3.76639 3.97535 4.23627 4.40611 4.46267 4.51297 4.53743 4.70616 4.83932 4.92548 5.04621 5.11925 5.24246 5.31770 5.36163 5.50743 5.57892 5.80645 5.90225 6.02629 6.29976 6.91872 7.43770 7.76353 8.94755 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.072583 B = 0.005473 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.673813 B = 5114.830830 C = 5235.825941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.270 1.270 7 C -0.530 4.530 8 H 0.062 0.938 9 C 0.033 3.967 10 C -0.077 4.077 11 H 0.062 0.938 12 C -0.100 4.100 13 C -0.118 4.118 14 C 0.136 3.864 15 H 0.128 0.872 16 N -0.460 5.460 17 C 0.159 3.841 18 N -0.346 5.346 19 N -0.349 5.349 20 C 0.159 3.841 21 C -0.122 4.122 22 H 0.261 0.739 23 H -0.003 1.003 24 H -0.016 1.016 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.239 0.761 30 H 0.251 0.749 31 H 0.073 0.927 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.077 -9.292 -4.177 11.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.780 3.220 4 H -0.191 1.191 5 H -0.215 1.215 6 H -0.195 1.195 7 C -0.568 4.568 8 H 0.080 0.920 9 C -0.004 4.004 10 C -0.096 4.096 11 H 0.080 0.920 12 C -0.138 4.138 13 C -0.156 4.156 14 C 0.033 3.967 15 H 0.146 0.854 16 N -0.149 5.149 17 C -0.130 4.130 18 N -0.185 5.185 19 N -0.188 5.188 20 C -0.130 4.130 21 C -0.160 4.160 22 H 0.070 0.930 23 H 0.015 0.985 24 H 0.002 0.998 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.255 0.745 30 H 0.267 0.733 31 H 0.092 0.908 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.077 -10.651 -3.858 12.414 hybrid contribution -0.227 2.558 -0.041 2.569 sum 4.850 -8.093 -3.899 10.209 Atomic orbital electron populations 1.70076 1.07722 1.27553 1.52242 1.25885 0.95582 1.03022 0.95200 0.85651 0.78345 0.78858 0.79115 1.19089 1.21455 1.19496 1.21644 0.93536 0.92108 1.49489 0.91961 1.19124 0.93889 0.92764 0.94634 1.21633 0.96841 0.92954 0.98153 0.91962 1.22173 1.00200 0.94727 0.96661 1.22842 0.95000 0.95143 1.02595 1.22641 1.01013 0.74042 0.98979 0.85381 1.46755 1.29569 1.09403 1.29140 1.26838 0.98399 0.91136 0.96591 1.74154 1.14646 1.12989 1.16746 1.74126 1.10595 1.25489 1.08586 1.27193 1.01128 0.82496 1.02186 1.22580 1.01120 0.95688 0.96602 0.93037 0.98464 0.99785 0.91371 0.92254 0.89297 0.89843 0.74534 0.73280 0.90787 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.66 13.29 21.45 0.28 -54.37 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.95 42.24 29.54 68.60 2.03 44.27 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.53 -27.62 8.66 25.60 0.22 -27.40 16 8 H 0.06 3.09 7.68 -2.91 -0.02 3.06 16 9 C 0.03 1.55 4.11 29.85 0.12 1.67 16 10 C -0.08 -2.58 2.89 -10.07 -0.03 -2.61 16 11 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 12 C -0.10 -2.82 5.84 31.67 0.18 -2.63 16 13 C -0.12 -2.36 6.48 31.88 0.21 -2.15 16 14 C 0.14 2.80 3.64 46.13 0.17 2.97 16 15 H 0.13 2.30 8.12 -2.39 -0.02 2.28 16 16 N -0.46 -9.86 2.71 -504.95 -1.37 -11.23 16 17 C 0.16 3.74 11.15 180.11 2.01 5.75 16 18 N -0.35 -10.54 12.21 -59.99 -0.73 -11.27 16 19 N -0.35 -10.41 12.21 -59.99 -0.73 -11.15 16 20 C 0.16 3.48 12.73 180.11 2.29 5.78 16 21 C -0.12 -3.24 6.14 31.39 0.19 -3.05 16 22 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 23 H 0.00 -0.15 8.04 -2.39 -0.02 -0.17 16 24 H -0.02 -0.86 8.14 -2.38 -0.02 -0.88 16 25 H 0.07 1.92 8.14 -2.38 -0.02 1.91 16 26 H 0.06 1.88 7.79 -2.38 -0.02 1.86 16 27 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.08 1.52 7.58 -2.38 -0.02 1.50 16 29 H 0.24 4.00 8.06 -2.91 -0.02 3.98 16 30 H 0.25 3.19 8.06 -2.91 -0.02 3.17 16 31 H 0.07 1.83 7.30 -2.39 -0.02 1.81 16 32 H 0.06 1.89 7.67 -2.39 -0.02 1.87 16 Total: -1.00 -66.98 269.54 6.40 -60.58 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: 1.09 Total: 4.36 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: 5.83 Total: -21.19 kcal Atomic # 7 Polarization: -85.47 SS G_CDS: -2.55 Total: -88.02 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -66.98 6.40 -60.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261000343.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.653 kcal (2) G-P(sol) polarization free energy of solvation -66.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds