Wall clock time and date at job start Mon Mar 30 2020 03:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.43481 * 54.29286 * 10 9 7 12 12 C 1.54266 * 110.48706 * 291.75952 * 10 9 7 13 13 C 1.53878 * 106.60037 * 217.71141 * 12 10 9 14 14 C 1.54266 * 106.59541 * 359.97438 * 13 12 10 15 15 H 1.08993 * 110.48924 * 264.80063 * 14 13 12 16 16 N 1.46505 * 110.48409 * 142.28760 * 14 13 12 17 17 C 1.35495 * 126.98360 * 301.14153 * 16 14 13 18 18 N 1.30518 * 107.30793 * 179.83446 * 17 16 14 19 19 N 1.28598 * 109.67042 * 0.44136 * 18 17 16 20 20 C 1.30521 * 109.67610 * 359.72024 * 19 18 17 21 21 C 1.54893 * 110.48932 * 176.83883 * 10 9 7 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.09004 * 110.03272 * 336.99427 * 12 10 9 26 26 H 1.09000 * 110.03618 * 98.37686 * 12 10 9 27 27 H 1.09002 * 110.03659 * 119.28137 * 13 12 10 28 28 H 1.08999 * 110.03111 * 240.71836 * 13 12 10 29 29 H 1.08000 * 126.34307 * 359.97438 * 17 16 14 30 30 H 1.07994 * 126.34603 * 180.02562 * 20 19 18 31 31 H 1.08996 * 110.75517 * 274.93733 * 21 10 9 32 32 H 1.08994 * 110.75148 * 38.30635 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9455 -3.5640 0.8299 12 6 3.0031 -3.7244 -1.3416 13 6 3.1774 -5.2156 -1.6792 14 6 2.5197 -6.0073 -0.5301 15 1 3.2651 -6.2923 0.2123 16 7 1.8365 -7.1941 -1.0507 17 6 0.8365 -7.2239 -1.9645 18 7 0.5174 -8.4757 -2.1503 19 7 1.2491 -9.2244 -1.4035 20 6 2.0723 -8.4846 -0.7116 21 6 1.4962 -5.0156 0.0805 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.4232 -3.2304 -2.1212 26 1 3.9779 -3.2469 -1.2424 27 1 2.6821 -5.4452 -2.6227 28 1 4.2371 -5.4624 -1.7436 29 1 0.3882 -6.3700 -2.4507 30 1 2.8056 -8.8360 -0.0010 31 1 1.2753 -5.2742 1.1161 32 1 0.5837 -4.9879 -0.5149 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261000346.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:07 Heat of formation + Delta-G solvation = 41.667326 kcal Electronic energy + Delta-G solvation = -14721.089819 eV Core-core repulsion = 12295.554629 eV Total energy + Delta-G solvation = -2425.535189 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.03922 -39.54797 -35.73194 -34.41484 -31.59411 -31.40687 -29.48853 -27.56643 -24.54222 -23.74277 -23.21022 -21.24026 -20.62656 -18.55139 -18.09081 -16.87499 -16.58631 -16.51039 -15.96087 -15.42615 -14.63232 -14.46121 -14.34070 -13.75090 -13.38048 -13.00239 -12.82843 -12.66121 -12.37884 -12.19245 -12.00665 -11.68295 -11.42707 -11.32564 -11.20413 -11.03333 -10.73645 -10.51300 -10.38616 -8.16894 -6.26363 0.94929 1.42197 1.43481 1.51172 1.62321 1.93694 2.42778 3.17392 3.49537 3.56215 3.72998 3.75065 3.98370 4.25347 4.40123 4.44884 4.50259 4.54477 4.68936 4.81786 4.93330 5.04584 5.15445 5.23397 5.29648 5.37640 5.49440 5.56124 5.80585 5.89580 6.03747 6.28524 6.91319 7.43060 7.76109 8.94542 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.065357 B = 0.005594 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.313278 B = 5003.811262 C = 5171.415948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.529 4.529 8 H 0.064 0.936 9 C 0.033 3.967 10 C -0.075 4.075 11 H 0.073 0.927 12 C -0.103 4.103 13 C -0.121 4.121 14 C 0.138 3.862 15 H 0.146 0.854 16 N -0.460 5.460 17 C 0.156 3.844 18 N -0.346 5.346 19 N -0.351 5.351 20 C 0.163 3.837 21 C -0.123 4.123 22 H 0.261 0.739 23 H -0.015 1.015 24 H -0.010 1.010 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.228 0.772 30 H 0.259 0.741 31 H 0.077 0.923 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.818 -10.483 -0.261 13.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.199 4.199 3 Si 0.782 3.218 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.567 4.567 8 H 0.082 0.918 9 C -0.004 4.004 10 C -0.094 4.094 11 H 0.091 0.909 12 C -0.141 4.141 13 C -0.159 4.159 14 C 0.036 3.964 15 H 0.163 0.837 16 N -0.149 5.149 17 C -0.133 4.133 18 N -0.185 5.185 19 N -0.190 5.190 20 C -0.125 4.125 21 C -0.161 4.161 22 H 0.070 0.930 23 H 0.004 0.996 24 H 0.009 0.991 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.114 0.886 29 H 0.244 0.756 30 H 0.274 0.726 31 H 0.095 0.905 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.987 -11.602 -0.808 14.108 hybrid contribution 0.371 2.406 0.461 2.478 sum 8.358 -9.196 -0.347 12.431 Atomic orbital electron populations 1.70088 1.07824 1.27575 1.52230 1.25922 0.95590 1.03172 0.95185 0.85621 0.78308 0.78686 0.79171 1.19182 1.21524 1.19191 1.21642 0.93586 0.92006 1.49503 0.91752 1.19027 0.93964 0.92924 0.94481 1.21839 0.96890 0.92850 0.97808 0.90862 1.21977 1.00379 0.94880 0.96839 1.22493 1.02182 0.94223 0.97019 1.22715 0.94754 0.81601 0.97353 0.83651 1.46778 1.27831 1.08898 1.31424 1.26700 0.92415 0.99013 0.95196 1.74162 1.22635 1.00808 1.20875 1.74116 1.07631 1.28137 1.09120 1.27273 1.02566 0.79998 1.02695 1.22928 0.97678 0.94201 1.01313 0.93046 0.99615 0.99115 0.93358 0.91349 0.91373 0.88559 0.75615 0.72554 0.90454 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.44 13.29 21.45 0.28 -55.16 16 2 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 3 Si 0.96 42.45 29.54 68.60 2.03 44.48 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.53 -27.78 8.71 25.60 0.22 -27.55 16 8 H 0.06 3.18 7.73 -2.91 -0.02 3.16 16 9 C 0.03 1.58 4.36 29.85 0.13 1.71 16 10 C -0.07 -2.49 2.82 -9.72 -0.03 -2.52 16 11 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 12 C -0.10 -2.95 5.96 31.32 0.19 -2.77 16 13 C -0.12 -2.45 6.48 31.32 0.20 -2.25 16 14 C 0.14 2.62 3.64 46.12 0.17 2.79 16 15 H 0.15 1.84 8.12 -2.39 -0.02 1.82 16 16 N -0.46 -9.89 2.70 -505.03 -1.37 -11.26 16 17 C 0.16 4.04 11.16 180.11 2.01 6.05 16 18 N -0.35 -11.06 12.21 -59.99 -0.73 -11.79 16 19 N -0.35 -10.52 12.21 -59.99 -0.73 -11.26 16 20 C 0.16 3.41 12.73 180.11 2.29 5.71 16 21 C -0.12 -3.25 5.92 31.94 0.19 -3.06 16 22 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 23 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 24 H -0.01 -0.50 8.01 -2.39 -0.02 -0.52 16 25 H 0.05 1.63 7.74 -2.38 -0.02 1.61 16 26 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.07 1.43 7.38 -2.39 -0.02 1.41 16 28 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.23 4.95 8.05 -2.91 -0.02 4.92 16 30 H 0.26 2.62 8.06 -2.91 -0.02 2.60 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.06 1.79 7.43 -2.39 -0.02 1.77 16 Total: -1.00 -68.71 270.02 6.41 -62.30 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: 1.09 Total: 4.18 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 5.84 Total: -21.50 kcal Atomic # 7 Polarization: -86.92 SS G_CDS: -2.55 Total: -89.46 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -68.71 6.41 -62.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261000346.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.969 kcal (2) G-P(sol) polarization free energy of solvation -68.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds