Wall clock time and date at job start Mon Mar 30 2020 03:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48503 * 109.46778 * 239.99544 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47402 * 119.99486 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 11 11 C 1.53002 * 109.46650 * 299.99719 * 9 7 2 12 12 C 1.53002 * 109.47128 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.46978 * 59.99726 * 12 11 9 14 14 C 1.53002 * 109.47415 * 300.00098 * 13 12 11 15 15 H 1.09002 * 109.47070 * 300.00053 * 14 13 12 16 16 N 1.46505 * 109.47411 * 179.97438 * 14 13 12 17 17 C 1.34431 * 126.82124 * 325.00192 * 16 14 13 18 18 N 1.30826 * 108.07548 * 179.97438 * 17 16 14 19 19 C 1.33235 * 109.83143 * 0.02562 * 18 17 16 20 20 N 1.30721 * 108.94791 * 359.75521 * 19 18 17 21 21 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 22 22 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47407 * 60.00187 * 11 9 7 24 24 H 1.09002 * 109.47596 * 299.99792 * 11 9 7 25 25 H 1.09002 * 109.47097 * 299.99925 * 12 11 9 26 26 H 1.08998 * 109.47844 * 180.02562 * 12 11 9 27 27 H 1.09000 * 109.47140 * 180.02562 * 13 12 11 28 28 H 1.09002 * 109.47497 * 60.00450 * 13 12 11 29 29 H 1.08001 * 125.96147 * 359.92889 * 17 16 14 30 30 H 1.07996 * 125.53249 * 179.97438 * 19 18 17 31 31 H 1.09002 * 109.47103 * 59.99616 * 21 9 7 32 32 H 1.08998 * 109.46862 * 300.00428 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 1 0.6248 -2.5571 -0.8896 11 6 0.3711 -2.5799 1.2495 12 6 -0.3943 -3.9047 1.2493 13 6 0.5995 -5.0679 1.2495 14 6 1.4795 -4.9872 0.0005 15 1 0.8531 -5.0447 -0.8896 16 7 2.4316 -6.1007 0.0011 17 6 3.0261 -6.6519 1.0734 18 7 3.8031 -7.6177 0.6550 19 6 3.7318 -7.7125 -0.6720 20 7 2.9007 -6.8075 -1.1182 21 6 2.2453 -3.6621 0.0005 22 1 -0.4850 0.8400 -0.0004 23 1 -0.3372 -1.7515 1.2491 24 1 0.9975 -2.5220 2.1398 25 1 -1.0208 -3.9622 0.3592 26 1 -1.0216 -3.9621 2.1388 27 1 0.0542 -6.0117 1.2489 28 1 1.2260 -5.0105 2.1397 29 1 2.8872 -6.3495 2.1009 30 1 4.2703 -8.4241 -1.2803 31 1 2.8720 -3.6043 0.8905 32 1 2.8720 -3.6042 -0.8894 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261011472.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:34 Heat of formation + Delta-G solvation = 67.526342 kcal Electronic energy + Delta-G solvation = -15079.655682 eV Core-core repulsion = 12655.241824 eV Total energy + Delta-G solvation = -2424.413858 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.83135 -37.97434 -33.73063 -32.22146 -30.96453 -30.11181 -28.40618 -25.00141 -23.30524 -21.93814 -21.22536 -20.58384 -18.87702 -17.21755 -16.01123 -15.27701 -14.83972 -14.55137 -14.23498 -13.97131 -13.56905 -13.04082 -12.52017 -12.13055 -11.89342 -11.83437 -11.02307 -10.84852 -10.76711 -10.70727 -10.32311 -10.02744 -9.88549 -9.64990 -9.56480 -9.45262 -9.15478 -8.77495 -8.39677 -6.08033 -4.14773 1.91936 2.61078 3.18085 3.27065 3.32006 3.34980 4.36668 4.51270 4.73361 5.05716 5.16787 5.23213 5.40422 5.47744 5.76562 5.87487 5.97107 6.14910 6.29772 6.37054 6.41491 6.55252 6.67913 6.68540 6.84166 7.04797 7.13662 7.31305 7.63486 7.84639 8.01509 8.32099 8.32968 8.87952 9.50645 10.97720 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042601 B = 0.007248 C = 0.006571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.098703 B = 3862.070266 C = 4259.902213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.054 0.946 9 C 0.055 3.945 10 H 0.029 0.971 11 C -0.116 4.116 12 C -0.114 4.114 13 C -0.120 4.120 14 C 0.152 3.848 15 H 0.100 0.900 16 N -0.358 5.358 17 C 0.249 3.751 18 N -0.558 5.558 19 C 0.183 3.817 20 N -0.323 5.323 21 C -0.112 4.112 22 H 0.262 0.738 23 H 0.097 0.903 24 H 0.037 0.963 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.213 0.787 30 H 0.212 0.788 31 H 0.056 0.944 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.081 -9.471 2.652 9.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.036 3.964 10 H 0.048 0.952 11 C -0.154 4.154 12 C -0.153 4.153 13 C -0.159 4.159 14 C 0.051 3.949 15 H 0.118 0.882 16 N -0.148 5.148 17 C -0.047 4.047 18 N -0.287 5.287 19 C -0.120 4.120 20 N -0.151 5.151 21 C -0.150 4.150 22 H 0.072 0.928 23 H 0.115 0.885 24 H 0.056 0.944 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.229 0.771 30 H 0.228 0.772 31 H 0.074 0.926 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.889 -9.389 2.084 9.659 hybrid contribution 0.444 1.022 0.158 1.125 sum 1.332 -8.367 2.242 8.765 Atomic orbital electron populations 1.69847 1.05850 1.26687 1.50421 1.24937 0.94869 0.99064 0.94911 0.86662 0.79635 0.83079 0.78674 1.20282 1.21220 1.20258 1.21089 0.92880 0.90407 1.51058 0.92747 1.18625 0.92252 0.90770 0.94737 0.95247 1.21715 0.99734 0.95180 0.98726 1.21602 0.97037 0.95524 1.01109 1.21913 0.98023 0.99868 0.96125 1.21868 0.88702 0.83461 1.00915 0.88211 1.50992 1.33520 1.26168 1.04099 1.25858 0.91683 0.91260 0.95941 1.70495 1.24991 1.21396 1.11777 1.25886 0.97382 0.98016 0.90694 1.78020 1.17337 1.10073 1.09704 1.22105 0.99343 0.92147 1.01445 0.92837 0.88481 0.94374 0.92320 0.92607 0.92338 0.91452 0.77076 0.77207 0.92563 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.23 11.32 55.43 0.63 -23.60 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -13.54 8.56 -34.44 -0.29 -13.84 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 9 C 0.06 1.27 2.10 -91.78 -0.19 1.08 16 10 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 11 C -0.12 -2.44 4.98 -26.73 -0.13 -2.57 16 12 C -0.11 -1.90 5.92 -26.73 -0.16 -2.06 16 13 C -0.12 -1.75 4.86 -26.73 -0.13 -1.88 16 14 C 0.15 2.53 3.24 -67.90 -0.22 2.31 16 15 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 16 N -0.36 -5.89 3.55 -56.08 -0.20 -6.09 16 17 C 0.25 3.67 11.78 -90.66 -1.07 2.61 16 18 N -0.56 -8.75 11.19 -15.83 -0.18 -8.93 16 19 C 0.18 2.73 13.03 -91.81 -1.20 1.54 16 20 N -0.32 -5.57 12.70 29.29 0.37 -5.19 16 21 C -0.11 -2.19 4.75 -26.71 -0.13 -2.32 16 22 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 23 H 0.10 2.35 6.07 -51.93 -0.32 2.03 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.89 7.22 -51.93 -0.37 0.52 16 29 H 0.21 2.35 7.32 -52.49 -0.38 1.96 16 30 H 0.21 2.26 8.06 -52.49 -0.42 1.83 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 264.00 15.07 3.98 3.98 Total: -1.00 -28.80 264.00 -8.45 -37.26 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -4.42 Total: 0.43 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -3.61 Total: -13.54 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.62 Total: -43.81 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.80 -8.45 -37.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011472.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.784 kcal (2) G-P(sol) polarization free energy of solvation -28.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds