Wall clock time and date at job start Mon Mar 30 2020 03:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48503 * 109.46778 * 239.99544 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47402 * 119.99486 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 11 11 C 1.53002 * 109.46650 * 299.99719 * 9 7 2 12 12 C 1.53002 * 109.47128 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.46978 * 59.99726 * 12 11 9 14 14 C 1.53002 * 109.47415 * 300.00098 * 13 12 11 15 15 H 1.09002 * 109.47070 * 300.00053 * 14 13 12 16 16 N 1.46505 * 109.47411 * 179.97438 * 14 13 12 17 17 C 1.34431 * 126.82124 * 325.00192 * 16 14 13 18 18 N 1.30826 * 108.07548 * 179.97438 * 17 16 14 19 19 C 1.33235 * 109.83143 * 0.02562 * 18 17 16 20 20 N 1.30721 * 108.94791 * 359.75521 * 19 18 17 21 21 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 22 22 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47407 * 60.00187 * 11 9 7 24 24 H 1.09002 * 109.47596 * 299.99792 * 11 9 7 25 25 H 1.09002 * 109.47097 * 299.99925 * 12 11 9 26 26 H 1.08998 * 109.47844 * 180.02562 * 12 11 9 27 27 H 1.09000 * 109.47140 * 180.02562 * 13 12 11 28 28 H 1.09002 * 109.47497 * 60.00450 * 13 12 11 29 29 H 1.08001 * 125.96147 * 359.92889 * 17 16 14 30 30 H 1.07996 * 125.53249 * 179.97438 * 19 18 17 31 31 H 1.09002 * 109.47103 * 59.99616 * 21 9 7 32 32 H 1.08998 * 109.46862 * 300.00428 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 1 0.6248 -2.5571 -0.8896 11 6 0.3711 -2.5799 1.2495 12 6 -0.3943 -3.9047 1.2493 13 6 0.5995 -5.0679 1.2495 14 6 1.4795 -4.9872 0.0005 15 1 0.8531 -5.0447 -0.8896 16 7 2.4316 -6.1007 0.0011 17 6 3.0261 -6.6519 1.0734 18 7 3.8031 -7.6177 0.6550 19 6 3.7318 -7.7125 -0.6720 20 7 2.9007 -6.8075 -1.1182 21 6 2.2453 -3.6621 0.0005 22 1 -0.4850 0.8400 -0.0004 23 1 -0.3372 -1.7515 1.2491 24 1 0.9975 -2.5220 2.1398 25 1 -1.0208 -3.9622 0.3592 26 1 -1.0216 -3.9621 2.1388 27 1 0.0542 -6.0117 1.2489 28 1 1.2260 -5.0105 2.1397 29 1 2.8872 -6.3495 2.1009 30 1 4.2703 -8.4241 -1.2803 31 1 2.8720 -3.6043 0.8905 32 1 2.8720 -3.6042 -0.8894 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261011472.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:33 Heat of formation + Delta-G solvation = 52.912743 kcal Electronic energy + Delta-G solvation = -15080.289375 eV Core-core repulsion = 12655.241824 eV Total energy + Delta-G solvation = -2425.047551 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.01768 -39.46204 -35.41667 -33.77610 -32.19693 -31.73699 -29.83005 -26.87271 -24.63091 -23.26699 -22.58719 -22.02023 -20.37719 -18.78571 -17.65817 -16.69327 -16.43133 -15.93889 -15.68960 -15.12444 -14.95205 -14.64841 -14.29080 -13.63686 -13.32508 -13.10049 -12.86323 -12.62981 -12.49113 -12.09603 -11.88271 -11.77475 -11.37665 -11.17800 -10.93978 -10.77234 -10.75348 -10.47192 -10.29523 -8.10448 -6.24108 0.75089 1.38817 1.41107 1.42277 1.49374 2.04276 2.42170 3.16752 3.48822 3.51633 3.86384 3.97948 4.08782 4.23981 4.41201 4.53772 4.64249 4.68843 4.81504 4.95523 5.01496 5.09032 5.23167 5.39571 5.41454 5.55896 5.58590 5.65663 5.94491 5.98511 6.19094 6.37803 6.86135 7.15869 7.44034 8.93143 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042601 B = 0.007248 C = 0.006571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.098703 B = 3862.070266 C = 4259.902213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.019 3.981 3 Si 0.947 3.053 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.539 4.539 8 H 0.046 0.954 9 C 0.053 3.947 10 H -0.003 1.003 11 C -0.108 4.108 12 C -0.106 4.106 13 C -0.109 4.109 14 C 0.163 3.837 15 H 0.086 0.914 16 N -0.371 5.371 17 C 0.256 3.744 18 N -0.574 5.574 19 C 0.189 3.811 20 N -0.363 5.363 21 C -0.098 4.098 22 H 0.262 0.738 23 H 0.062 0.938 24 H 0.038 0.962 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.248 0.752 30 H 0.245 0.755 31 H 0.060 0.940 32 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.515 -10.680 3.942 11.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.180 4.180 3 Si 0.773 3.227 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.577 4.577 8 H 0.064 0.936 9 C 0.034 3.966 10 H 0.015 0.985 11 C -0.146 4.146 12 C -0.145 4.145 13 C -0.148 4.148 14 C 0.061 3.939 15 H 0.104 0.896 16 N -0.160 5.160 17 C -0.040 4.040 18 N -0.303 5.303 19 C -0.113 4.113 20 N -0.191 5.191 21 C -0.137 4.137 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.264 0.736 30 H 0.261 0.739 31 H 0.079 0.921 32 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.329 -10.609 3.373 11.211 hybrid contribution 0.360 1.378 -0.274 1.450 sum 1.689 -9.231 3.099 9.883 Atomic orbital electron populations 1.69977 1.06883 1.27240 1.50952 1.25624 0.95651 1.01986 0.94765 0.85777 0.78563 0.79635 0.78677 1.20295 1.20745 1.19554 1.21482 0.92835 0.92298 1.51079 0.93552 1.18556 0.92633 0.91031 0.94403 0.98522 1.21499 0.98925 0.96803 0.97399 1.21481 0.97215 0.93722 1.02043 1.21849 0.97471 0.99911 0.95559 1.21576 0.88315 0.82148 1.01828 0.89555 1.50866 1.34198 1.26412 1.04564 1.26627 0.90256 0.90236 0.96865 1.70568 1.25554 1.22038 1.12101 1.26612 0.96271 0.97514 0.90909 1.78000 1.18853 1.11392 1.10832 1.21833 0.98415 0.93001 1.00430 0.92906 0.91909 0.94293 0.93079 0.90020 0.89704 0.89249 0.73599 0.73905 0.92090 0.94885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.71 11.32 21.45 0.24 -50.47 16 2 C 0.02 1.03 5.30 84.65 0.45 1.47 16 3 Si 0.95 42.77 29.54 68.60 2.03 44.80 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.54 -28.92 8.56 25.60 0.22 -28.70 16 8 H 0.05 2.49 7.74 -2.91 -0.02 2.46 16 9 C 0.05 2.49 2.10 -11.54 -0.02 2.46 16 10 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 11 C -0.11 -4.55 4.98 30.60 0.15 -4.40 16 12 C -0.11 -3.33 5.92 30.59 0.18 -3.15 16 13 C -0.11 -2.83 4.86 30.59 0.15 -2.69 16 14 C 0.16 5.24 3.24 45.01 0.15 5.39 16 15 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 16 N -0.37 -11.50 3.55 -331.35 -1.17 -12.68 16 17 C 0.26 6.76 11.78 180.36 2.12 8.88 16 18 N -0.57 -16.43 11.19 -204.01 -2.28 -18.71 16 19 C 0.19 5.24 13.03 180.76 2.36 7.60 16 20 N -0.36 -12.03 12.70 -61.25 -0.78 -12.80 16 21 C -0.10 -3.86 4.75 30.61 0.15 -3.71 16 22 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 23 H 0.06 3.09 6.07 -2.39 -0.01 3.07 16 24 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.09 1.97 7.22 -2.39 -0.02 1.95 16 29 H 0.25 4.36 7.32 -2.91 -0.02 4.34 16 30 H 0.25 4.56 8.06 -2.91 -0.02 4.54 16 31 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.03 1.41 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -63.11 264.00 5.03 -58.09 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 1.10 Total: 8.62 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 5.90 Total: -16.84 kcal Atomic # 7 Polarization: -90.67 SS G_CDS: -3.99 Total: -94.67 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -63.11 5.03 -58.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011472.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.999 kcal (2) G-P(sol) polarization free energy of solvation -63.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds