Wall clock time and date at job start Mon Mar 30 2020 03:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00012 * 2 1 4 4 H 1.48501 * 109.47055 * 180.27445 * 3 2 1 5 5 H 1.48498 * 109.47099 * 300.27355 * 3 2 1 6 6 H 1.48500 * 109.47187 * 60.27288 * 3 2 1 7 7 C 1.37880 * 119.99860 * 180.27094 * 2 1 3 8 8 H 1.08000 * 120.00038 * 179.72809 * 7 2 1 9 9 C 1.50694 * 119.99970 * 359.72637 * 7 2 1 10 10 H 1.09003 * 109.47571 * 60.00235 * 9 7 2 11 11 C 1.53004 * 109.47471 * 299.99804 * 9 7 2 12 12 C 1.53003 * 109.47301 * 180.02562 * 11 9 7 13 13 C 1.52994 * 109.47049 * 60.00181 * 12 11 9 14 14 C 1.53000 * 109.47253 * 299.99641 * 13 12 11 15 15 H 1.09004 * 109.47736 * 180.02562 * 14 13 12 16 16 N 1.46502 * 109.47261 * 300.00629 * 14 13 12 17 17 C 1.34427 * 126.82043 * 324.56323 * 16 14 13 18 18 N 1.30833 * 108.07762 * 179.89858 * 17 16 14 19 19 C 1.33239 * 109.82690 * 0.37852 * 18 17 16 20 20 N 1.30710 * 108.94863 * 359.76661 * 19 18 17 21 21 C 1.53001 * 109.47324 * 179.97438 * 9 7 2 22 22 H 0.96999 * 119.99918 * 359.72207 * 1 2 3 23 23 H 1.09005 * 109.46941 * 300.00212 * 11 9 7 24 24 H 1.09001 * 109.46697 * 59.99887 * 11 9 7 25 25 H 1.09000 * 109.46830 * 300.00205 * 12 11 9 26 26 H 1.08997 * 109.46567 * 179.97438 * 12 11 9 27 27 H 1.09004 * 109.47307 * 180.02562 * 13 12 11 28 28 H 1.08997 * 109.47505 * 59.99566 * 13 12 11 29 29 H 1.08005 * 125.96057 * 0.03880 * 17 16 14 30 30 H 1.08000 * 125.52979 * 179.80283 * 19 18 17 31 31 H 1.08994 * 109.47472 * 300.00514 * 21 9 7 32 32 H 1.09005 * 109.46791 * 59.99970 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0067 5 1 1.8854 2.3993 -1.2091 6 1 1.8954 2.3935 1.2158 7 6 2.0045 -1.1941 -0.0056 8 1 3.0845 -1.1941 -0.0101 9 6 1.2510 -2.4991 -0.0056 10 1 0.6207 -2.5549 -0.8931 11 6 0.3766 -2.5832 1.2471 12 6 -0.3880 -3.9085 1.2475 13 6 0.6066 -5.0710 1.2409 14 6 1.4810 -4.9871 -0.0118 15 1 2.1894 -5.8155 -0.0167 16 7 0.6339 -5.0624 -1.2046 17 6 -0.4853 -5.7920 -1.3532 18 7 -0.9477 -5.5852 -2.5594 19 6 -0.1498 -4.7397 -3.2105 20 7 0.8330 -4.3915 -2.4223 21 6 2.2452 -3.6621 -0.0131 22 1 -0.4850 0.8400 0.0041 23 1 1.0069 -2.5275 2.1347 24 1 -0.3317 -1.7547 1.2520 25 1 -1.0182 -3.9646 0.3599 26 1 -1.0105 -3.9685 2.1401 27 1 0.0620 -6.0152 1.2407 28 1 1.2370 -5.0149 2.1284 29 1 -0.9271 -6.4349 -0.6062 30 1 -0.2923 -4.3972 -4.2247 31 1 2.8679 -3.6021 -0.9056 32 1 2.8759 -3.6066 0.8743 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261011475.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:36 Heat of formation + Delta-G solvation = 76.495556 kcal Electronic energy + Delta-G solvation = -15606.273655 eV Core-core repulsion = 13182.248731 eV Total energy + Delta-G solvation = -2424.024924 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.64940 -37.84275 -33.43815 -31.84953 -30.83413 -29.85300 -28.63798 -24.92400 -23.08928 -21.66504 -20.90105 -20.61325 -18.89019 -16.60385 -16.20231 -15.30838 -14.65814 -14.26589 -14.18199 -13.82872 -13.19628 -12.84545 -12.24676 -12.13880 -11.68148 -11.63870 -11.31819 -10.96682 -10.67879 -10.49584 -10.20507 -9.88715 -9.53594 -9.44672 -9.34257 -9.20735 -8.83136 -8.64372 -8.25258 -5.95464 -4.00894 2.20179 2.85380 3.30508 3.38741 3.42272 3.46577 4.45438 4.71163 4.84164 5.19497 5.27177 5.31095 5.36509 5.62272 5.77149 6.01048 6.03485 6.25778 6.36034 6.46527 6.59235 6.70256 6.80413 6.96700 7.03352 7.19524 7.35845 7.46315 7.76908 8.09228 8.15356 8.47691 8.59768 9.03236 9.63035 11.10491 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034322 B = 0.009653 C = 0.008771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.603842 B = 2899.807259 C = 3191.465732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.509 4.509 8 H 0.053 0.947 9 C 0.052 3.948 10 H 0.039 0.961 11 C -0.114 4.114 12 C -0.122 4.122 13 C -0.126 4.126 14 C 0.154 3.846 15 H 0.079 0.921 16 N -0.350 5.350 17 C 0.239 3.761 18 N -0.556 5.556 19 C 0.177 3.823 20 N -0.289 5.289 21 C -0.110 4.110 22 H 0.258 0.742 23 H 0.034 0.966 24 H 0.092 0.908 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.208 0.792 30 H 0.209 0.791 31 H 0.063 0.937 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.311 -10.525 1.425 10.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.547 4.547 8 H 0.071 0.929 9 C 0.033 3.967 10 H 0.057 0.943 11 C -0.152 4.152 12 C -0.160 4.160 13 C -0.165 4.165 14 C 0.053 3.947 15 H 0.097 0.903 16 N -0.142 5.142 17 C -0.058 4.058 18 N -0.285 5.285 19 C -0.126 4.126 20 N -0.116 5.116 21 C -0.148 4.148 22 H 0.068 0.932 23 H 0.053 0.947 24 H 0.110 0.890 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.224 0.776 30 H 0.226 0.774 31 H 0.082 0.918 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.512 -10.038 1.154 10.117 hybrid contribution 0.344 0.861 0.287 0.970 sum 0.856 -9.177 1.441 9.329 Atomic orbital electron populations 1.69890 1.05857 1.26108 1.51102 1.24945 0.94800 0.98958 0.95284 0.86596 0.80163 0.84101 0.77486 1.19852 1.21102 1.21164 1.21197 0.92786 0.90682 1.50016 0.92853 1.18643 0.92499 0.90879 0.94658 0.94322 1.21688 0.99717 0.94881 0.98922 1.21664 0.97390 0.96461 1.00438 1.21948 0.98829 0.99209 0.96467 1.21661 0.91357 1.01367 0.80356 0.90325 1.50608 1.20317 1.31767 1.11476 1.25690 0.87609 0.96586 0.95874 1.70441 1.31158 1.21608 1.05278 1.25868 0.90228 0.95659 1.00859 1.78163 1.24352 1.17507 0.91604 1.21852 0.98952 0.92486 1.01494 0.93210 0.94737 0.88992 0.92967 0.93248 0.92486 0.89760 0.77607 0.77444 0.91811 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 11.33 55.43 0.63 -25.21 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.51 -14.00 8.56 -34.44 -0.29 -14.30 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.26 1.91 -91.77 -0.18 1.09 16 10 H 0.04 1.08 6.58 -51.93 -0.34 0.74 16 11 C -0.11 -2.61 4.98 -26.73 -0.13 -2.74 16 12 C -0.12 -2.20 5.72 -26.73 -0.15 -2.36 16 13 C -0.13 -1.80 5.08 -26.73 -0.14 -1.94 16 14 C 0.15 2.50 3.65 -67.95 -0.25 2.25 16 15 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 16 N -0.35 -6.21 2.87 -56.13 -0.16 -6.37 16 17 C 0.24 3.80 10.64 -90.66 -0.96 2.84 16 18 N -0.56 -9.83 11.19 -15.83 -0.18 -10.00 16 19 C 0.18 3.16 13.03 -91.82 -1.20 1.97 16 20 N -0.29 -5.80 10.73 29.29 0.31 -5.49 16 21 C -0.11 -2.20 4.37 -26.75 -0.12 -2.32 16 22 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 23 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.09 2.43 6.08 -51.93 -0.32 2.12 16 25 H 0.05 1.03 6.65 -51.93 -0.35 0.69 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.64 7.23 -51.93 -0.38 0.27 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.21 2.38 7.33 -52.48 -0.38 2.00 16 30 H 0.21 2.97 8.06 -52.49 -0.42 2.55 16 31 H 0.06 1.35 8.02 -51.93 -0.42 0.94 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 256.93 15.07 3.87 3.87 Total: -1.00 -31.35 256.93 -8.31 -39.66 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -4.26 Total: 0.88 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -3.51 Total: -13.90 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: 0.60 Total: -47.08 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.35 -8.31 -39.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011475.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.157 kcal (2) G-P(sol) polarization free energy of solvation -31.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds