Wall clock time and date at job start Mon Mar 30 2020 03:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00263 * 2 1 4 4 H 1.48503 * 109.47299 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46831 * 299.99898 * 3 2 1 6 6 H 1.48498 * 109.46968 * 59.99931 * 3 2 1 7 7 C 1.37884 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00212 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99738 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.46968 * 60.00144 * 9 7 2 11 11 C 1.53003 * 109.47160 * 300.00282 * 9 7 2 12 12 C 1.53000 * 109.46949 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.47323 * 60.00080 * 12 11 9 14 14 C 1.53000 * 109.46715 * 300.00010 * 13 12 11 15 15 C 1.52994 * 109.47438 * 60.00161 * 14 13 12 16 16 H 1.08996 * 109.47690 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47165 * 59.99441 * 15 14 13 18 18 C 1.35307 * 125.86967 * 35.58359 * 17 15 14 19 19 C 1.35345 * 106.17753 * 179.97438 * 18 17 15 20 20 N 1.33773 * 106.49597 * 359.97438 * 19 18 17 21 21 N 1.28624 * 108.88677 * 0.02562 * 20 19 18 22 22 H 0.97000 * 119.99838 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47287 * 60.00406 * 11 9 7 24 24 H 1.08998 * 109.47067 * 299.99801 * 11 9 7 25 25 H 1.09004 * 109.47328 * 299.99466 * 12 11 9 26 26 H 1.08999 * 109.47086 * 180.02562 * 12 11 9 27 27 H 1.09000 * 109.46864 * 179.97438 * 13 12 11 28 28 H 1.08998 * 109.46827 * 59.99780 * 13 12 11 29 29 H 1.08998 * 109.47285 * 299.99489 * 14 13 12 30 30 H 1.08999 * 109.46736 * 180.02562 * 14 13 12 31 31 H 1.08004 * 126.91043 * 359.96685 * 18 17 15 32 32 H 1.08004 * 126.74967 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 6 0.3718 -2.5805 1.2490 12 6 -0.3927 -3.9057 1.2493 13 6 0.6019 -5.0684 1.2490 14 6 1.4811 -4.9870 -0.0005 15 6 2.2457 -3.6618 -0.0008 16 1 2.8723 -3.6040 -0.8907 17 7 3.0882 -3.5839 1.1951 18 6 3.7314 -4.6203 1.7808 19 6 4.3868 -4.1038 2.8463 20 7 4.1167 -2.7937 2.8599 21 7 3.3446 -2.5175 1.8689 22 1 -0.4850 0.8401 -0.0004 23 1 -0.3365 -1.7520 1.2494 24 1 0.9988 -2.5230 2.1388 25 1 -1.0197 -3.9637 0.3595 26 1 -1.0194 -3.9635 2.1392 27 1 0.0572 -6.0125 1.2497 28 1 1.2288 -5.0103 2.1388 29 1 0.8542 -5.0450 -0.8903 30 1 2.1893 -5.8155 -0.0009 31 1 3.7232 -5.6522 1.4621 32 1 5.0062 -4.6432 3.5476 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261014143.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:32 Heat of formation + Delta-G solvation = 91.510934 kcal Electronic energy + Delta-G solvation = -15902.199108 eV Core-core repulsion = 13478.825300 eV Total energy + Delta-G solvation = -2423.373808 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.53258 -37.95353 -33.02675 -32.82170 -30.54777 -29.28645 -29.22690 -24.96676 -22.92192 -22.00438 -20.93723 -20.75012 -19.01601 -16.71484 -15.98006 -15.54402 -14.65780 -14.42482 -14.01221 -13.76879 -13.30717 -12.92089 -12.19320 -11.91497 -11.69946 -11.62997 -10.91187 -10.78044 -10.70695 -10.53118 -10.22116 -10.14977 -9.81723 -9.74606 -9.32923 -9.02759 -8.72522 -8.55146 -8.26950 -5.93774 -3.95320 2.45561 3.23669 3.35689 3.38546 3.47174 3.54599 4.53443 4.96575 5.14532 5.25757 5.28954 5.38465 5.55188 5.78304 5.86877 5.94082 5.98690 6.05279 6.17120 6.22410 6.44810 6.58848 6.61909 6.80370 6.86404 7.04656 7.29653 7.41277 7.70850 7.91938 8.09714 8.38088 9.03447 9.43560 9.67777 11.12908 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027383 B = 0.013215 C = 0.010064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.270524 B = 2118.249616 C = 2781.460882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.489 4.489 8 H 0.063 0.937 9 C 0.049 3.951 10 H 0.049 0.951 11 C -0.115 4.115 12 C -0.123 4.123 13 C -0.118 4.118 14 C -0.127 4.127 15 C 0.142 3.858 16 H 0.089 0.911 17 N -0.256 5.256 18 C -0.080 4.080 19 C -0.070 4.070 20 N -0.312 5.312 21 N -0.013 5.013 22 H 0.258 0.742 23 H 0.098 0.902 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.174 0.826 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.244 -11.257 0.318 11.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.528 4.528 8 H 0.081 0.919 9 C 0.031 3.969 10 H 0.066 0.934 11 C -0.153 4.153 12 C -0.161 4.161 13 C -0.156 4.156 14 C -0.165 4.165 15 C 0.041 3.959 16 H 0.107 0.893 17 N -0.051 5.051 18 C -0.231 4.231 19 C -0.227 4.227 20 N -0.177 5.177 21 N 0.007 4.993 22 H 0.068 0.932 23 H 0.116 0.884 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.191 0.809 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 1.858 -9.606 0.415 9.793 hybrid contribution 0.595 -0.488 -0.105 0.777 sum 2.453 -10.094 0.311 10.393 Atomic orbital electron populations 1.69867 1.05850 1.26250 1.51707 1.24831 0.94733 0.99002 0.95166 0.86514 0.80430 0.83784 0.77178 1.19724 1.21508 1.21099 1.21077 0.93077 0.89543 1.49069 0.91923 1.18975 0.91617 0.90374 0.95953 0.93367 1.21685 0.99664 0.95360 0.98584 1.21692 0.97504 0.96544 1.00371 1.21549 0.98059 0.98672 0.97317 1.21924 0.98865 0.95482 1.00231 1.22191 0.92342 0.99061 0.82277 0.89296 1.47736 1.30998 1.05172 1.21163 1.23407 1.03601 0.96447 0.99642 1.23397 1.05917 0.92794 1.00615 1.75228 1.13081 1.13845 1.15547 1.78977 1.10815 1.09516 0.99995 0.93218 0.88389 0.93949 0.92661 0.93679 0.92782 0.92544 0.89595 0.92288 0.80852 0.80861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.28 11.32 55.43 0.63 -24.65 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 4 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.49 -13.06 6.93 -34.44 -0.24 -13.30 16 8 H 0.06 1.74 6.78 -52.49 -0.36 1.38 16 9 C 0.05 1.14 1.86 -91.77 -0.17 0.97 16 10 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 11 C -0.11 -2.65 4.78 -26.73 -0.13 -2.78 16 12 C -0.12 -2.28 5.92 -26.73 -0.16 -2.43 16 13 C -0.12 -1.84 5.72 -26.73 -0.15 -2.00 16 14 C -0.13 -1.86 5.07 -26.73 -0.14 -1.99 16 15 C 0.14 2.67 3.04 -67.93 -0.21 2.46 16 16 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 17 N -0.26 -5.06 2.68 -54.77 -0.15 -5.21 16 18 C -0.08 -1.29 9.54 -17.05 -0.16 -1.45 16 19 C -0.07 -1.19 12.05 -17.74 -0.21 -1.41 16 20 N -0.31 -6.85 12.41 30.23 0.38 -6.47 16 21 N -0.01 -0.30 8.76 60.35 0.53 0.23 16 22 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 23 H 0.10 2.58 6.07 -51.93 -0.32 2.26 16 24 H 0.04 1.05 6.55 -51.93 -0.34 0.71 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.95 6.65 -51.93 -0.35 0.60 16 29 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.06 0.71 7.18 -51.93 -0.37 0.33 16 31 H 0.17 2.06 7.32 -52.48 -0.38 1.68 16 32 H 0.17 2.24 8.06 -52.48 -0.42 1.82 16 LS Contribution 252.02 15.07 3.80 3.80 Total: -1.00 -30.17 252.02 -5.71 -35.88 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -4.21 Total: -0.50 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -1.66 Total: -20.28 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 1.38 Total: -36.10 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.17 -5.71 -35.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261014143.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.390 kcal (2) G-P(sol) polarization free energy of solvation -30.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds