Wall clock time and date at job start Mon Mar 30 2020 03:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86807 * 119.99636 * 2 1 4 4 H 1.48496 * 109.47216 * 269.99722 * 3 2 1 5 5 H 1.48500 * 109.47116 * 30.00512 * 3 2 1 6 6 H 1.48499 * 109.46431 * 149.99892 * 3 2 1 7 7 C 1.37872 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99849 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99795 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47026 * 299.99271 * 9 7 2 11 11 C 1.53000 * 109.47595 * 59.99881 * 9 7 2 12 12 C 1.52998 * 109.46876 * 179.97438 * 11 9 7 13 13 C 1.52992 * 109.47514 * 299.99628 * 12 11 9 14 14 C 1.53000 * 109.47119 * 60.00322 * 13 12 11 15 15 C 1.53005 * 109.47122 * 300.00131 * 14 13 12 16 16 H 1.08997 * 109.47068 * 300.00147 * 15 14 13 17 17 N 1.46496 * 109.47343 * 179.97438 * 15 14 13 18 18 C 1.35314 * 125.86654 * 324.99961 * 17 15 14 19 19 C 1.35358 * 106.17498 * 179.97438 * 18 17 15 20 20 N 1.33767 * 106.49287 * 0.26477 * 19 18 17 21 21 N 1.28632 * 108.88855 * 359.56308 * 20 19 18 22 22 H 0.97004 * 120.00064 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46589 * 300.00077 * 11 9 7 24 24 H 1.08999 * 109.46623 * 60.00069 * 11 9 7 25 25 H 1.08999 * 109.47294 * 60.00656 * 12 11 9 26 26 H 1.09004 * 109.46655 * 179.97438 * 12 11 9 27 27 H 1.08997 * 109.47720 * 180.02562 * 13 12 11 28 28 H 1.09006 * 109.47407 * 300.00553 * 13 12 11 29 29 H 1.09004 * 109.47643 * 180.02562 * 14 13 12 30 30 H 1.09001 * 109.47194 * 59.99652 * 14 13 12 31 31 H 1.08004 * 126.91628 * 0.02562 * 18 17 15 32 32 H 1.08002 * 126.74926 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6179 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6242 -2.5574 0.8880 11 6 0.3718 -2.5794 -1.2513 12 6 -0.3926 -3.9047 -1.2526 13 6 0.6019 -5.0672 -1.2534 14 6 1.4812 -4.9870 -0.0039 15 6 2.2458 -3.6617 -0.0024 16 1 2.8726 -3.6029 -0.8922 17 7 3.0872 -3.5846 1.1943 18 6 2.7768 -4.0794 2.4149 19 6 3.8276 -3.7897 3.2175 20 7 4.7149 -3.1352 2.4601 21 7 4.2489 -3.0349 1.2654 22 1 -0.4850 0.8401 -0.0004 23 1 -0.3364 -1.7509 -1.2509 24 1 0.9989 -2.5211 -2.1410 25 1 -1.0196 -3.9634 -0.3630 26 1 -1.0193 -3.9616 -2.1427 27 1 0.0574 -6.0114 -1.2548 28 1 1.2289 -5.0085 -2.1432 29 1 2.1901 -5.8150 -0.0046 30 1 0.8543 -5.0457 0.8859 31 1 1.8730 -4.6014 2.6927 32 1 3.9275 -4.0343 4.2647 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261014145.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:38 Heat of formation + Delta-G solvation = 77.994639 kcal Electronic energy + Delta-G solvation = -15563.271403 eV Core-core repulsion = 13139.311484 eV Total energy + Delta-G solvation = -2423.959919 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.49588 -38.03129 -33.29646 -33.05050 -30.37900 -29.66531 -29.01357 -25.04416 -23.07688 -21.99073 -21.26903 -20.46444 -18.96949 -17.02948 -16.36578 -15.47878 -14.60185 -14.39819 -14.08389 -13.71414 -13.33125 -13.11153 -12.38907 -12.29263 -11.83194 -11.08422 -11.01374 -10.88743 -10.71495 -10.62820 -10.43884 -10.22256 -10.03749 -9.89799 -9.78130 -8.92349 -8.89354 -8.65278 -8.39792 -6.08444 -4.14617 2.42650 3.19927 3.28201 3.29906 3.36411 3.45650 4.40515 4.92394 5.13402 5.19764 5.23852 5.41533 5.53596 5.68129 5.81312 5.87379 5.97917 6.05096 6.08383 6.27635 6.34311 6.46785 6.57210 6.68081 6.80136 6.96173 7.07765 7.40071 7.58492 7.75300 7.97716 8.24041 8.90697 9.29723 9.52353 10.97213 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.020209 B = 0.014441 C = 0.009181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.215589 B = 1938.504289 C = 3048.989189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.890 3.110 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.519 4.519 8 H 0.067 0.933 9 C 0.048 3.952 10 H 0.033 0.967 11 C -0.109 4.109 12 C -0.125 4.125 13 C -0.109 4.109 14 C -0.125 4.125 15 C 0.143 3.857 16 H 0.100 0.900 17 N -0.248 5.248 18 C -0.056 4.056 19 C -0.068 4.068 20 N -0.297 5.297 21 N -0.074 5.074 22 H 0.261 0.739 23 H 0.101 0.899 24 H 0.040 0.960 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.178 0.822 32 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.002 -9.866 0.264 9.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.135 4.135 3 Si 0.718 3.282 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.557 4.557 8 H 0.085 0.915 9 C 0.029 3.971 10 H 0.051 0.949 11 C -0.147 4.147 12 C -0.163 4.163 13 C -0.147 4.147 14 C -0.164 4.164 15 C 0.043 3.957 16 H 0.118 0.882 17 N -0.041 5.041 18 C -0.208 4.208 19 C -0.227 4.227 20 N -0.162 5.162 21 N -0.053 5.053 22 H 0.071 0.929 23 H 0.119 0.881 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.195 0.805 32 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -0.029 -8.967 -0.523 8.982 hybrid contribution -0.632 0.376 0.651 0.982 sum -0.661 -8.591 0.128 8.617 Atomic orbital electron populations 1.69858 1.05880 1.26647 1.50635 1.24889 0.94806 0.99166 0.94674 0.86593 0.80225 0.83162 0.78234 1.20535 1.21276 1.19604 1.21243 0.93623 0.89947 1.50898 0.91489 1.19043 0.91623 0.90582 0.95901 0.94855 1.21630 0.99480 0.95953 0.97651 1.21708 0.97626 0.96176 1.00748 1.21457 0.97692 0.98845 0.96747 1.21908 0.98768 0.95591 1.00104 1.22207 0.92129 0.98126 0.83267 0.88238 1.47575 1.13005 1.33311 1.10182 1.23395 1.03206 1.07683 0.86528 1.23372 0.93029 1.04907 1.01353 1.75008 1.26353 1.17098 0.97714 1.78224 0.96102 1.15507 1.15498 0.92930 0.88056 0.94104 0.92600 0.93106 0.92265 0.92004 0.92208 0.91228 0.80526 0.80484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.65 11.32 55.43 0.63 -24.02 16 2 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.52 -13.92 8.16 -34.44 -0.28 -14.20 16 8 H 0.07 1.89 6.82 -52.48 -0.36 1.53 16 9 C 0.05 1.09 1.82 -91.77 -0.17 0.93 16 10 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 11 C -0.11 -2.29 4.98 -26.73 -0.13 -2.42 16 12 C -0.13 -2.06 5.92 -26.74 -0.16 -2.22 16 13 C -0.11 -1.53 5.92 -26.74 -0.16 -1.68 16 14 C -0.12 -1.87 4.84 -26.73 -0.13 -1.99 16 15 C 0.14 2.76 2.52 -67.93 -0.17 2.59 16 16 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 17 N -0.25 -5.06 2.88 -54.76 -0.16 -5.22 16 18 C -0.06 -0.98 10.69 -17.04 -0.18 -1.16 16 19 C -0.07 -1.21 12.05 -17.74 -0.21 -1.42 16 20 N -0.30 -6.45 12.41 30.24 0.38 -6.07 16 21 N -0.07 -1.68 12.22 60.35 0.74 -0.95 16 22 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 23 H 0.10 2.46 6.07 -51.93 -0.32 2.14 16 24 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.99 7.17 -51.93 -0.37 0.62 16 31 H 0.18 2.42 7.30 -52.48 -0.38 2.04 16 32 H 0.18 2.38 8.06 -52.49 -0.42 1.95 16 LS Contribution 260.76 15.07 3.93 3.93 Total: -1.00 -29.96 260.76 -5.57 -35.52 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -4.37 Total: -0.20 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -1.69 Total: -19.86 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 1.58 Total: -36.26 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.96 -5.57 -35.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261014145.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.519 kcal (2) G-P(sol) polarization free energy of solvation -29.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds