Wall clock time and date at job start Mon Mar 30 2020 03:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99951 * 2 1 4 4 H 1.48501 * 109.46776 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47493 * 299.99927 * 3 2 1 6 6 H 1.48499 * 109.46919 * 60.00139 * 3 2 1 7 7 C 1.37873 * 119.99685 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99995 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00115 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46988 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.43771 * 54.29840 * 10 9 7 12 12 C 1.54268 * 110.48492 * 291.75864 * 10 9 7 13 13 C 1.53873 * 106.59703 * 217.58490 * 12 10 9 14 14 C 1.54265 * 106.59997 * 359.97438 * 13 12 10 15 15 C 1.54888 * 104.19721 * 23.61451 * 14 13 12 16 16 H 1.09000 * 110.75534 * 80.36765 * 15 14 13 17 17 N 1.46491 * 110.75896 * 203.74163 * 15 14 13 18 18 N 1.28595 * 124.62195 * 53.02755 * 17 15 14 19 19 C 1.31376 * 108.72467 * 179.82923 * 18 17 15 20 20 C 1.39680 * 105.89711 * 0.41341 * 19 18 17 21 21 N 1.28600 * 124.61918 * 233.32784 * 17 15 14 22 22 H 0.97002 * 119.99535 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47211 * 60.00260 * 9 7 2 24 24 H 1.09000 * 109.46769 * 300.00011 * 9 7 2 25 25 H 1.09002 * 110.02813 * 336.86374 * 12 10 9 26 26 H 1.08992 * 110.03427 * 98.29574 * 12 10 9 27 27 H 1.08993 * 110.03875 * 119.28743 * 13 12 10 28 28 H 1.09005 * 110.03120 * 240.71705 * 13 12 10 29 29 H 1.09007 * 110.48635 * 142.29223 * 14 13 12 30 30 H 1.08998 * 110.48903 * 264.80414 * 14 13 12 31 31 H 1.08003 * 127.05539 * 180.16032 * 19 18 17 32 32 H 1.08000 * 127.05346 * 179.76647 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9456 -3.5641 0.8289 12 6 3.0032 -3.7243 -1.3427 13 6 3.1803 -5.2155 -1.6787 14 6 2.5244 -6.0073 -0.5287 15 6 1.4994 -5.0172 0.0780 16 1 0.5877 -4.9911 -0.5187 17 7 1.2013 -5.3660 1.4692 18 7 2.0871 -5.5365 2.3857 19 6 1.4780 -5.8350 3.5107 20 6 0.1128 -5.8468 3.2152 21 7 0.0183 -5.5490 1.9391 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5570 0.8897 25 1 2.4222 -3.2323 -2.1227 26 1 3.9773 -3.2455 -1.2439 27 1 2.6855 -5.4471 -2.6218 28 1 4.2406 -5.4603 -1.7429 29 1 2.0178 -6.8918 -0.9149 30 1 3.2704 -6.2899 0.2140 31 1 1.9385 -6.0348 4.4670 32 1 -0.6986 -6.0573 3.8961 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261014181.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:56 Heat of formation + Delta-G solvation = 87.777554 kcal Electronic energy + Delta-G solvation = -15096.807060 eV Core-core repulsion = 12673.271360 eV Total energy + Delta-G solvation = -2423.535700 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.09862 -38.06433 -33.14458 -32.23479 -31.95390 -30.31445 -27.63740 -25.89386 -22.97019 -22.51060 -21.63993 -19.91625 -19.10676 -17.29061 -16.13352 -15.74118 -15.06750 -14.64943 -14.51720 -14.14529 -13.26553 -13.08199 -12.44602 -11.98161 -11.60673 -11.40726 -11.23155 -10.92703 -10.84536 -10.57058 -10.52644 -10.26954 -10.17490 -9.95995 -9.77170 -9.37854 -9.16622 -8.68422 -8.37766 -6.01579 -4.04300 2.30809 2.78778 2.87206 3.29698 3.37349 3.41207 4.42891 4.57634 4.85688 4.97494 5.17271 5.34343 5.35941 5.57314 5.66978 5.72912 5.81752 5.91953 5.99734 6.06844 6.28761 6.39034 6.43375 6.61335 6.74379 6.85321 6.99334 7.22787 7.61254 7.72683 7.95880 8.37280 8.81806 9.01705 9.59801 11.09608 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027332 B = 0.008790 C = 0.007336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.196523 B = 3184.545739 C = 3815.626325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.030 3.970 10 C -0.086 4.086 11 H 0.077 0.923 12 C -0.106 4.106 13 C -0.122 4.122 14 C -0.128 4.128 15 C 0.155 3.845 16 H 0.119 0.881 17 N -0.128 5.128 18 N -0.284 5.284 19 C -0.043 4.043 20 C -0.042 4.042 21 N -0.287 5.287 22 H 0.260 0.740 23 H 0.020 0.980 24 H 0.014 0.986 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.191 0.809 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.550 -11.872 1.376 12.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.075 0.925 9 C -0.007 4.007 10 C -0.106 4.106 11 H 0.095 0.905 12 C -0.144 4.144 13 C -0.160 4.160 14 C -0.167 4.167 15 C 0.055 3.945 16 H 0.136 0.864 17 N -0.029 5.029 18 N -0.126 5.126 19 C -0.225 4.225 20 C -0.224 4.224 21 N -0.128 5.128 22 H 0.070 0.930 23 H 0.038 0.962 24 H 0.032 0.968 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.208 0.792 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 3.669 -11.433 0.061 12.007 hybrid contribution 0.079 0.791 1.144 1.393 sum 3.747 -10.642 1.205 11.347 Atomic orbital electron populations 1.69986 1.06042 1.26500 1.50744 1.25024 0.94829 0.99261 0.95335 0.86552 0.80138 0.83857 0.77581 1.19705 1.20977 1.21066 1.21184 0.93002 0.90655 1.50563 0.92509 1.19163 0.93241 0.90942 0.97330 1.22477 0.98107 0.92022 0.97947 0.90481 1.22043 1.00877 0.94037 0.97465 1.22132 1.00345 0.96253 0.97241 1.22690 0.97993 0.97267 0.98728 1.23044 1.00617 0.97775 0.73033 0.86352 1.48180 0.99258 1.45041 1.10453 1.73919 1.23282 1.17239 0.98166 1.24666 0.92631 1.07268 0.97917 1.24671 0.97988 1.07135 0.92608 1.74067 1.09165 1.17055 1.12529 0.93041 0.96169 0.96775 0.90712 0.91523 0.91698 0.91623 0.91515 0.90125 0.79233 0.79236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.09 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.52 -14.50 8.71 -34.44 -0.30 -14.80 16 8 H 0.06 1.55 7.73 -52.48 -0.41 1.15 16 9 C 0.03 0.78 4.37 -27.88 -0.12 0.66 16 10 C -0.09 -1.76 2.46 -88.97 -0.22 -1.98 16 11 H 0.08 1.71 7.88 -51.93 -0.41 1.30 16 12 C -0.11 -1.85 5.96 -25.61 -0.15 -2.00 16 13 C -0.12 -1.66 6.80 -25.61 -0.17 -1.84 16 14 C -0.13 -1.86 6.44 -25.07 -0.16 -2.02 16 15 C 0.16 2.80 3.32 -65.95 -0.22 2.58 16 16 H 0.12 2.13 8.06 -51.93 -0.42 1.71 16 17 N -0.13 -2.43 3.84 -3.22 -0.01 -2.45 16 18 N -0.28 -5.20 11.17 30.68 0.34 -4.86 16 19 C -0.04 -0.65 12.20 -17.21 -0.21 -0.86 16 20 C -0.04 -0.65 12.20 -17.21 -0.21 -0.86 16 21 N -0.29 -5.45 12.05 30.68 0.37 -5.08 16 22 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.02 0.54 8.01 -51.93 -0.42 0.13 16 24 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 1.37 7.75 -51.93 -0.40 0.97 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 30 H 0.08 1.21 7.70 -51.93 -0.40 0.81 16 31 H 0.19 2.04 8.06 -52.48 -0.42 1.62 16 32 H 0.19 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 271.38 15.07 4.09 4.09 Total: -1.00 -32.31 271.38 -5.91 -38.21 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -4.55 Total: -0.76 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -1.86 Total: -19.58 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 1.44 Total: -38.75 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.31 -5.91 -38.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261014181.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.991 kcal (2) G-P(sol) polarization free energy of solvation -32.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds