Wall clock time and date at job start Mon Mar 30 2020 03:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99951 * 2 1 4 4 H 1.48501 * 109.46776 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47493 * 299.99927 * 3 2 1 6 6 H 1.48499 * 109.46919 * 60.00139 * 3 2 1 7 7 C 1.37873 * 119.99685 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99995 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00115 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46988 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.43771 * 54.29840 * 10 9 7 12 12 C 1.54268 * 110.48492 * 291.75864 * 10 9 7 13 13 C 1.53873 * 106.59703 * 217.58490 * 12 10 9 14 14 C 1.54265 * 106.59997 * 359.97438 * 13 12 10 15 15 C 1.54888 * 104.19721 * 23.61451 * 14 13 12 16 16 H 1.09000 * 110.75534 * 80.36765 * 15 14 13 17 17 N 1.46491 * 110.75896 * 203.74163 * 15 14 13 18 18 N 1.28595 * 124.62195 * 53.02755 * 17 15 14 19 19 C 1.31376 * 108.72467 * 179.82923 * 18 17 15 20 20 C 1.39680 * 105.89711 * 0.41341 * 19 18 17 21 21 N 1.28600 * 124.61918 * 233.32784 * 17 15 14 22 22 H 0.97002 * 119.99535 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47211 * 60.00260 * 9 7 2 24 24 H 1.09000 * 109.46769 * 300.00011 * 9 7 2 25 25 H 1.09002 * 110.02813 * 336.86374 * 12 10 9 26 26 H 1.08992 * 110.03427 * 98.29574 * 12 10 9 27 27 H 1.08993 * 110.03875 * 119.28743 * 13 12 10 28 28 H 1.09005 * 110.03120 * 240.71705 * 13 12 10 29 29 H 1.09007 * 110.48635 * 142.29223 * 14 13 12 30 30 H 1.08998 * 110.48903 * 264.80414 * 14 13 12 31 31 H 1.08003 * 127.05539 * 180.16032 * 19 18 17 32 32 H 1.08000 * 127.05346 * 179.76647 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9456 -3.5641 0.8289 12 6 3.0032 -3.7243 -1.3427 13 6 3.1803 -5.2155 -1.6787 14 6 2.5244 -6.0073 -0.5287 15 6 1.4994 -5.0172 0.0780 16 1 0.5877 -4.9911 -0.5187 17 7 1.2013 -5.3660 1.4692 18 7 2.0871 -5.5365 2.3857 19 6 1.4780 -5.8350 3.5107 20 6 0.1128 -5.8468 3.2152 21 7 0.0183 -5.5490 1.9391 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5570 0.8897 25 1 2.4222 -3.2323 -2.1227 26 1 3.9773 -3.2455 -1.2439 27 1 2.6855 -5.4471 -2.6218 28 1 4.2406 -5.4603 -1.7429 29 1 2.0178 -6.8918 -0.9149 30 1 3.2704 -6.2899 0.2140 31 1 1.9385 -6.0348 4.4670 32 1 -0.6986 -6.0573 3.8961 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261014181.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:56 Heat of formation + Delta-G solvation = 66.820119 kcal Electronic energy + Delta-G solvation = -15097.715842 eV Core-core repulsion = 12673.271360 eV Total energy + Delta-G solvation = -2424.444482 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.39673 -39.49980 -35.24107 -33.53250 -33.28620 -32.14387 -28.93621 -27.76700 -24.69255 -23.85585 -23.11248 -21.21674 -20.67437 -18.83416 -18.13666 -17.10431 -16.74385 -16.06911 -15.85995 -15.52224 -14.76512 -14.56541 -14.33732 -13.59284 -13.37409 -13.09495 -12.75650 -12.49697 -12.38518 -12.17186 -12.04468 -11.81773 -11.58214 -11.43585 -11.25201 -11.24346 -11.10293 -10.61206 -10.05869 -8.23798 -6.35199 0.98214 1.36028 1.36555 1.49022 1.49955 1.68647 2.36804 3.09188 3.32797 3.53680 3.71541 3.90065 4.17850 4.23684 4.41246 4.44917 4.51776 4.64191 4.69347 4.82779 5.01623 5.03953 5.19505 5.22972 5.31792 5.41136 5.46027 5.48461 5.60294 5.76479 5.92415 6.17711 6.80136 7.34129 7.52417 8.88274 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027332 B = 0.008790 C = 0.007336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.196523 B = 3184.545739 C = 3815.626325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.282 1.282 7 C -0.531 4.531 8 H 0.061 0.939 9 C 0.042 3.958 10 C -0.080 4.080 11 H 0.058 0.942 12 C -0.104 4.104 13 C -0.108 4.108 14 C -0.115 4.115 15 C 0.153 3.847 16 H 0.109 0.891 17 N -0.149 5.149 18 N -0.312 5.312 19 C -0.036 4.036 20 C -0.037 4.037 21 N -0.330 5.330 22 H 0.263 0.737 23 H -0.002 1.002 24 H -0.032 1.032 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.234 0.766 32 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.018 -12.692 1.592 13.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.208 1.208 7 C -0.569 4.569 8 H 0.080 0.920 9 C 0.005 3.995 10 C -0.099 4.099 11 H 0.077 0.923 12 C -0.142 4.142 13 C -0.146 4.146 14 C -0.153 4.153 15 C 0.053 3.947 16 H 0.127 0.873 17 N -0.049 5.049 18 N -0.153 5.153 19 C -0.218 4.218 20 C -0.218 4.218 21 N -0.170 5.170 22 H 0.072 0.928 23 H 0.016 0.984 24 H -0.013 1.013 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.250 0.750 32 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 5.152 -12.264 0.257 13.305 hybrid contribution -0.455 1.036 1.203 1.651 sum 4.697 -11.228 1.460 12.258 Atomic orbital electron populations 1.70128 1.07883 1.27660 1.51769 1.26000 0.95728 1.03430 0.94781 0.85408 0.79183 0.78771 0.77782 1.18375 1.19999 1.20765 1.21577 0.93398 0.91790 1.50177 0.92035 1.18949 0.93491 0.93063 0.93960 1.22225 0.96857 0.91645 0.99220 0.92343 1.21985 0.99970 0.97247 0.94991 1.22093 1.02195 0.92649 0.97694 1.22649 0.96919 0.97151 0.98601 1.22978 1.00852 0.97342 0.73559 0.87295 1.48208 0.99334 1.46632 1.10758 1.73881 1.23973 1.18246 0.99173 1.25461 0.92628 1.05162 0.98525 1.25436 0.99464 1.05078 0.91866 1.74032 1.09801 1.18640 1.14551 0.92832 0.98372 1.01320 0.92126 0.91402 0.89548 0.89084 0.89200 0.90316 0.75019 0.75366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.34 13.29 21.45 0.28 -58.06 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 3 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 7 C -0.53 -30.71 8.71 25.60 0.22 -30.48 16 8 H 0.06 3.41 7.73 -2.91 -0.02 3.39 16 9 C 0.04 2.31 4.37 29.85 0.13 2.44 16 10 C -0.08 -3.37 2.46 -9.72 -0.02 -3.39 16 11 H 0.06 2.67 7.88 -2.39 -0.02 2.65 16 12 C -0.10 -3.58 5.96 31.32 0.19 -3.39 16 13 C -0.11 -2.69 6.80 31.32 0.21 -2.48 16 14 C -0.11 -3.13 6.44 31.67 0.20 -2.92 16 15 C 0.15 5.60 3.32 46.28 0.15 5.75 16 16 H 0.11 4.09 8.06 -2.39 -0.02 4.07 16 17 N -0.15 -5.72 3.84 -164.09 -0.63 -6.35 16 18 N -0.31 -11.22 11.17 -56.86 -0.63 -11.85 16 19 C -0.04 -1.02 12.20 85.11 1.04 0.02 16 20 C -0.04 -1.07 12.20 85.11 1.04 -0.04 16 21 N -0.33 -12.61 12.05 -56.86 -0.69 -13.29 16 22 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 23 H 0.00 -0.12 8.01 -2.39 -0.02 -0.14 16 24 H -0.03 -1.98 8.14 -2.39 -0.02 -2.00 16 25 H 0.06 2.24 7.75 -2.39 -0.02 2.22 16 26 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.08 2.20 7.70 -2.39 -0.02 2.19 16 31 H 0.23 4.19 8.06 -2.91 -0.02 4.17 16 32 H 0.23 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -72.86 271.38 5.08 -67.78 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 1.09 Total: 8.80 kcal Atomic # 6 Polarization: -37.76 SS G_CDS: 3.62 Total: -34.14 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -1.67 Total: -89.56 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -72.86 5.08 -67.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261014181.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.602 kcal (2) G-P(sol) polarization free energy of solvation -72.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds