Wall clock time and date at job start Mon Mar 30 2020 02:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.46943 * 2 1 4 4 C 1.35746 * 116.99907 * 180.02562 * 3 2 1 5 5 C 1.39280 * 120.84667 * 0.02562 * 4 3 2 6 6 C 1.37945 * 119.09363 * 179.97438 * 5 4 3 7 7 N 1.31980 * 120.82458 * 0.02901 * 6 5 4 8 8 C 1.31949 * 121.86117 * 359.65182 * 7 6 5 9 9 C 1.37992 * 120.81879 * 0.63537 * 8 7 6 10 10 C 1.50703 * 120.45290 * 179.67588 * 9 8 7 11 11 H 1.09002 * 109.46988 * 179.72311 * 10 9 8 12 12 C 1.53005 * 109.46755 * 59.72620 * 10 9 8 13 13 C 1.50699 * 109.47154 * 299.72805 * 10 9 8 14 14 H 1.07991 * 120.00132 * 5.37326 * 13 10 9 15 15 C 1.37883 * 119.99630 * 185.37071 * 13 10 9 16 16 N 1.31511 * 119.99545 * 185.16932 * 15 13 10 17 17 Si 1.86801 * 120.00311 * 5.17068 * 15 13 10 18 18 H 1.48505 * 109.46697 * 269.99861 * 17 15 13 19 19 H 1.48496 * 109.46973 * 29.99673 * 17 15 13 20 20 H 1.48497 * 109.47080 * 149.99899 * 17 15 13 21 21 H 1.08993 * 109.47894 * 59.99184 * 1 2 3 22 22 H 1.09004 * 109.47365 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46893 * 299.99226 * 1 2 3 24 24 H 1.09008 * 109.46893 * 240.00774 * 2 1 3 25 25 H 1.08993 * 109.47894 * 120.00816 * 2 1 3 26 26 H 1.08001 * 120.45152 * 359.95924 * 5 4 3 27 27 H 1.08004 * 119.59033 * 180.02562 * 6 5 4 28 28 H 1.08000 * 119.59126 * 180.31443 * 8 7 6 29 29 H 1.09000 * 109.46997 * 294.94953 * 12 10 9 30 30 H 1.08994 * 109.47416 * 54.95298 * 12 10 9 31 31 H 1.09006 * 109.47084 * 174.95137 * 12 10 9 32 32 H 0.96995 * 120.00438 * 354.99473 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3520 1.5251 -0.0005 5 6 4.2167 0.4332 -0.0016 6 6 5.5781 0.6558 -0.0027 7 7 6.0627 1.8834 -0.0021 8 6 5.2760 2.9427 -0.0073 9 6 3.9032 2.8039 -0.0005 10 6 3.0125 4.0195 0.0008 11 1 1.9688 3.7052 0.0015 12 6 3.2919 4.8577 -1.2484 13 6 3.2898 4.8441 1.2313 14 1 4.0945 4.5679 1.8964 15 6 2.5159 5.9513 1.5080 16 7 2.8201 6.7287 2.5241 17 14 1.0356 6.3469 0.4396 18 1 1.4546 7.2278 -0.6802 19 1 0.4687 5.0877 -0.1066 20 1 0.0068 7.0397 1.2561 21 1 -0.3634 0.5139 -0.8898 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8898 26 1 3.8266 -0.5739 -0.0013 27 1 6.2559 -0.1851 -0.0039 28 1 5.7121 3.9308 -0.0118 29 1 4.3092 5.2465 -1.2050 30 1 3.1781 4.2357 -2.1362 31 1 2.5872 5.6881 -1.2939 32 1 3.5438 6.4846 3.1220 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261018407.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:51 Heat of formation + Delta-G solvation = -39.245531 kcal Electronic energy + Delta-G solvation = -15083.686646 eV Core-core repulsion = 12622.350061 eV Total energy + Delta-G solvation = -2461.336585 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.63311 -39.23553 -36.72114 -33.97832 -32.90377 -31.66076 -30.40801 -26.77003 -25.53132 -24.39345 -23.14252 -21.52029 -19.61742 -19.35620 -17.72035 -17.10743 -16.41610 -15.94334 -15.57413 -15.25819 -14.87368 -14.74112 -14.41768 -13.97726 -13.58262 -13.47416 -13.34433 -13.19939 -12.67162 -12.35049 -11.95941 -11.83112 -11.69235 -11.53674 -10.90964 -10.62637 -10.36289 -10.01982 -9.58544 -8.67995 -6.37793 0.22217 0.45081 1.42507 1.53481 1.71029 2.19182 2.47391 2.90452 3.11407 3.58902 3.77330 3.94124 4.04846 4.17162 4.22547 4.34833 4.37656 4.57196 4.71750 4.78291 4.85989 4.92919 4.94272 5.02864 5.13243 5.24395 5.26057 5.65468 5.70822 5.99754 6.05051 6.38384 6.56457 7.10371 7.40234 8.66585 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.023207 B = 0.011248 C = 0.008527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.240464 B = 2488.800505 C = 3283.010477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.040 3.960 3 O -0.328 6.328 4 C 0.147 3.853 5 C -0.252 4.252 6 C 0.110 3.890 7 N -0.529 5.529 8 C 0.120 3.880 9 C -0.143 4.143 10 C 0.050 3.950 11 H 0.036 0.964 12 C -0.138 4.138 13 C -0.578 4.578 14 H 0.017 0.983 15 C -0.024 4.024 16 N -0.946 5.946 17 Si 1.091 2.909 18 H -0.259 1.259 19 H -0.255 1.255 20 H -0.293 1.293 21 H 0.062 0.938 22 H 0.110 0.890 23 H 0.053 0.947 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.172 0.828 27 H 0.193 0.807 28 H 0.144 0.856 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.892 -15.952 -8.573 18.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.034 4.034 3 O -0.240 6.240 4 C 0.094 3.906 5 C -0.273 4.273 6 C -0.047 4.047 7 N -0.242 5.242 8 C -0.035 4.035 9 C -0.146 4.146 10 C 0.031 3.969 11 H 0.054 0.946 12 C -0.195 4.195 13 C -0.616 4.616 14 H 0.035 0.965 15 C -0.221 4.221 16 N -0.583 5.583 17 Si 0.914 3.086 18 H -0.185 1.185 19 H -0.180 1.180 20 H -0.220 1.220 21 H 0.081 0.919 22 H 0.129 0.871 23 H 0.072 0.928 24 H 0.101 0.899 25 H 0.090 0.910 26 H 0.189 0.811 27 H 0.209 0.791 28 H 0.161 0.839 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.378 -14.594 -8.808 17.378 hybrid contribution 0.735 -0.935 0.977 1.539 sum -2.643 -15.529 -7.831 17.591 Atomic orbital electron populations 1.21827 0.91567 1.04406 1.02915 1.23199 0.97054 0.80395 1.02736 1.86131 1.18185 1.31927 1.87739 1.19356 0.83641 0.93807 0.93826 1.22439 0.95067 0.99459 1.10302 1.23094 0.93453 0.94662 0.93532 1.67700 1.40627 0.99827 1.16060 1.22312 0.89091 0.97592 0.94462 1.20650 0.95983 0.94186 1.03732 1.18005 0.94665 0.90036 0.94215 0.94559 1.22023 1.01168 0.99219 0.97081 1.22201 1.17006 1.13409 1.08993 0.96473 1.27186 1.03159 0.92703 0.99013 1.70940 1.31852 1.38237 1.17297 0.83432 0.73062 0.77530 0.74604 1.18484 1.17961 1.21962 0.91924 0.87145 0.92778 0.89914 0.90953 0.81068 0.79069 0.83880 0.93219 0.92778 0.93763 0.94096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 10.28 71.98 0.74 -2.10 16 2 C 0.04 0.91 5.49 71.98 0.39 1.30 16 3 O -0.33 -11.57 9.03 -90.71 -0.82 -12.39 16 4 C 0.15 5.51 6.70 22.76 0.15 5.66 16 5 C -0.25 -7.26 9.11 22.45 0.20 -7.06 16 6 C 0.11 3.24 11.17 84.60 0.95 4.18 16 7 N -0.53 -19.96 10.36 -196.08 -2.03 -21.99 16 8 C 0.12 5.09 9.90 84.62 0.84 5.93 16 9 C -0.14 -6.28 4.76 -19.68 -0.09 -6.37 16 10 C 0.05 2.47 2.04 -12.28 -0.03 2.44 16 11 H 0.04 1.83 5.60 -2.39 -0.01 1.82 16 12 C -0.14 -5.94 8.52 71.98 0.61 -5.33 16 13 C -0.58 -33.76 8.64 25.60 0.22 -33.54 16 14 H 0.02 1.10 7.78 -2.92 -0.02 1.08 16 15 C -0.02 -1.43 5.43 84.66 0.46 -0.97 16 16 N -0.95 -60.85 13.70 21.45 0.29 -60.56 16 17 Si 1.09 51.88 25.29 68.60 1.73 53.62 16 18 H -0.26 -11.28 6.81 99.48 0.68 -10.60 16 19 H -0.26 -11.13 6.36 99.48 0.63 -10.50 16 20 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 21 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 23 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 24 H 0.08 1.46 7.71 -2.38 -0.02 1.44 16 25 H 0.07 1.43 7.71 -2.39 -0.02 1.42 16 26 H 0.17 3.36 6.47 -2.91 -0.02 3.34 16 27 H 0.19 3.83 8.06 -2.91 -0.02 3.81 16 28 H 0.14 6.32 7.64 -2.91 -0.02 6.30 16 29 H 0.05 2.12 7.58 -2.39 -0.02 2.10 16 30 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.04 1.89 4.40 -2.38 -0.01 1.88 16 32 H 0.25 16.37 8.72 -92.71 -0.81 15.56 16 Total: -1.00 -71.69 264.95 4.59 -67.09 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.96 Total: 10.09 kcal Atomic # 6 Polarization: -40.31 SS G_CDS: 4.45 Total: -35.86 kcal Atomic # 7 Polarization: -80.81 SS G_CDS: -1.74 Total: -82.55 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: -0.82 Total: -12.39 kcal Atomic # 14 Polarization: 51.88 SS G_CDS: 1.73 Total: 53.62 kcal Total: -71.69 4.59 -67.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261018407.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.846 kcal (2) G-P(sol) polarization free energy of solvation -71.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds