Wall clock time and date at job start Mon Mar 30 2020 02:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42908 * 109.47123 * 2 1 4 4 C 1.35736 * 116.99716 * 180.02562 * 3 2 1 5 5 C 1.39283 * 120.85376 * 0.24852 * 4 3 2 6 6 C 1.37948 * 119.09513 * 180.29401 * 5 4 3 7 7 N 1.31977 * 120.82415 * 359.70622 * 6 5 4 8 8 C 1.31950 * 121.86268 * 0.02562 * 7 6 5 9 9 C 1.37986 * 120.82151 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.45612 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.47551 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47211 * 300.00335 * 10 9 8 13 13 C 1.50702 * 109.46869 * 59.99891 * 10 9 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 10 9 16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 10 17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 10 18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13 19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13 21 21 H 1.08999 * 109.46956 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47304 * 299.99871 * 1 2 3 23 23 H 1.09002 * 109.47285 * 60.00258 * 1 2 3 24 24 H 1.08999 * 109.47304 * 240.00128 * 2 1 3 25 25 H 1.09001 * 109.47703 * 120.00069 * 2 1 3 26 26 H 1.08001 * 120.45407 * 0.02562 * 5 4 3 27 27 H 1.07999 * 119.59163 * 179.71916 * 6 5 4 28 28 H 1.07997 * 119.58970 * 179.97438 * 8 7 6 29 29 H 1.09003 * 109.46851 * 299.99806 * 12 10 9 30 30 H 1.09003 * 109.47532 * 59.99881 * 12 10 9 31 31 H 1.09001 * 109.47094 * 179.97438 * 12 10 9 32 32 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3520 1.5251 -0.0005 5 6 4.2167 0.4333 -0.0063 6 6 5.5781 0.6558 -0.0004 7 7 6.0627 1.8834 0.0046 8 6 5.2760 2.9428 0.0048 9 6 3.9032 2.8039 0.0002 10 6 3.0125 4.0195 0.0011 11 1 1.9688 3.7053 -0.0035 12 6 3.2891 4.8536 1.2535 13 6 3.2924 4.8482 -1.2262 14 1 4.0402 4.5265 -1.9360 15 6 2.5895 6.0138 -1.4460 16 7 2.8299 6.7341 -2.5198 17 14 1.2957 6.5699 -0.2187 18 1 1.9275 7.4372 0.8078 19 1 0.2366 7.3325 -0.9273 20 1 0.6943 5.3820 0.4390 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 3.8268 -0.5739 -0.0108 27 1 6.2559 -0.1850 -0.0002 28 1 5.7121 3.9308 0.0094 29 1 3.0866 4.2542 2.1412 30 1 4.3328 5.1679 1.2576 31 1 2.6451 5.7331 1.2539 32 1 2.3357 7.5543 -2.6742 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261018409.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:54 Heat of formation + Delta-G solvation = -9.637922 kcal Electronic energy + Delta-G solvation = -15068.010921 eV Core-core repulsion = 12607.958218 eV Total energy + Delta-G solvation = -2460.052703 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.20720 -37.88067 -34.88755 -32.13545 -31.53996 -30.34107 -28.90479 -25.07204 -24.25036 -22.99382 -21.89837 -19.91258 -18.03513 -16.91395 -15.99887 -15.86784 -15.08628 -14.59273 -14.19648 -13.54196 -13.48140 -13.11876 -12.80916 -12.54571 -12.39892 -12.16928 -11.98011 -11.40790 -11.12257 -10.88677 -10.77335 -10.22861 -10.14238 -9.44012 -9.25042 -8.81103 -8.62482 -8.55202 -7.93964 -6.06696 -4.06394 1.68287 1.92573 3.28471 3.39586 3.41097 3.42663 4.38686 4.42396 4.94087 4.95306 4.98379 5.20036 5.23974 5.26542 5.33854 5.55310 5.71222 5.81281 6.01208 6.08444 6.16025 6.30252 6.42063 6.44579 6.65023 6.75249 7.00760 7.19130 7.50236 7.70636 7.73133 8.49025 8.58991 8.96330 9.54384 11.06077 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.023764 B = 0.010923 C = 0.008452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.962811 B = 2562.797143 C = 3312.195636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.300 6.300 4 C 0.154 3.846 5 C -0.267 4.267 6 C 0.105 3.895 7 N -0.512 5.512 8 C 0.134 3.866 9 C -0.105 4.105 10 C 0.048 3.952 11 H 0.045 0.955 12 C -0.143 4.143 13 C -0.509 4.509 14 H 0.075 0.925 15 C 0.072 3.928 16 N -0.899 5.899 17 Si 0.887 3.113 18 H -0.278 1.278 19 H -0.298 1.298 20 H -0.265 1.265 21 H 0.074 0.926 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.128 0.872 27 H 0.147 0.853 28 H 0.164 0.836 29 H 0.029 0.971 30 H 0.054 0.946 31 H 0.042 0.958 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.934 -12.747 6.771 14.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.212 6.212 4 C 0.101 3.899 5 C -0.288 4.288 6 C -0.052 4.052 7 N -0.224 5.224 8 C -0.020 4.020 9 C -0.107 4.107 10 C 0.028 3.972 11 H 0.063 0.937 12 C -0.201 4.201 13 C -0.547 4.547 14 H 0.093 0.907 15 C -0.130 4.130 16 N -0.537 5.537 17 Si 0.717 3.283 18 H -0.205 1.205 19 H -0.225 1.225 20 H -0.190 1.190 21 H 0.093 0.907 22 H 0.084 0.916 23 H 0.087 0.913 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.146 0.854 27 H 0.164 0.836 28 H 0.181 0.819 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.282 -12.324 6.666 14.070 hybrid contribution -1.577 -0.020 0.472 1.647 sum -2.860 -12.344 7.138 14.543 Atomic orbital electron populations 1.21761 0.92913 1.02385 1.03845 1.22751 0.95894 0.82589 1.00997 1.86157 1.18747 1.28322 1.87975 1.19218 0.82515 0.93883 0.94252 1.22038 0.95697 0.98422 1.12621 1.22296 0.92237 0.94732 0.95935 1.67689 1.40571 0.98987 1.15164 1.22584 0.89008 0.97484 0.92955 1.20708 0.95863 0.93427 1.00746 1.18144 0.94746 0.89363 0.94901 0.93665 1.22170 1.01342 0.99174 0.97375 1.20944 1.22517 1.05844 1.05347 0.90677 1.24972 0.96514 0.96271 0.95216 1.69890 1.41800 1.15284 1.26675 0.86853 0.81536 0.78963 0.80928 1.20541 1.22543 1.18978 0.90691 0.91557 0.91252 0.92208 0.92406 0.85427 0.83596 0.81932 0.95207 0.92675 0.93899 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.28 37.15 0.38 -1.27 16 2 C 0.05 0.68 5.49 37.15 0.20 0.89 16 3 O -0.30 -5.53 9.03 -18.92 -0.17 -5.70 16 4 C 0.15 2.98 6.70 -38.82 -0.26 2.72 16 5 C -0.27 -4.28 9.11 -39.30 -0.36 -4.64 16 6 C 0.11 1.71 11.17 -17.60 -0.20 1.52 16 7 N -0.51 -9.80 10.36 -13.33 -0.14 -9.94 16 8 C 0.13 2.77 9.90 -17.59 -0.17 2.59 16 9 C -0.10 -2.27 4.75 -104.34 -0.50 -2.77 16 10 C 0.05 1.15 2.06 -92.92 -0.19 0.96 16 11 H 0.05 1.14 6.15 -51.93 -0.32 0.83 16 12 C -0.14 -3.14 8.49 37.16 0.32 -2.83 16 13 C -0.51 -14.28 8.83 -34.44 -0.30 -14.58 16 14 H 0.08 2.30 7.85 -52.49 -0.41 1.88 16 15 C 0.07 2.07 5.45 -17.82 -0.10 1.98 16 16 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 17 Si 0.89 22.03 24.37 -169.99 -4.14 17.89 16 18 H -0.28 -6.69 6.87 56.52 0.39 -6.30 16 19 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 20 H -0.26 -6.37 6.52 56.52 0.37 -6.00 16 21 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.70 7.70 -51.93 -0.40 0.30 16 25 H 0.06 0.64 7.72 -51.93 -0.40 0.24 16 26 H 0.13 1.60 6.47 -52.49 -0.34 1.26 16 27 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 28 H 0.16 3.31 7.59 -52.49 -0.40 2.91 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 1.14 7.41 -51.93 -0.39 0.76 16 31 H 0.04 0.97 3.29 -51.93 -0.17 0.80 16 32 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 LS Contribution 263.59 15.07 3.97 3.97 Total: -1.00 -31.55 263.59 -5.00 -36.56 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -4.12 Total: -0.67 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -1.18 Total: -15.42 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.64 Total: -36.62 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.17 Total: -5.70 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.14 Total: 17.89 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.55 -5.00 -36.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261018409.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.918 kcal (2) G-P(sol) polarization free energy of solvation -31.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds