Wall clock time and date at job start Mon Mar 30 2020 02:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42908 * 109.47123 * 2 1 4 4 C 1.35736 * 116.99716 * 180.02562 * 3 2 1 5 5 C 1.39283 * 120.85376 * 0.24852 * 4 3 2 6 6 C 1.37948 * 119.09513 * 180.29401 * 5 4 3 7 7 N 1.31977 * 120.82415 * 359.70622 * 6 5 4 8 8 C 1.31950 * 121.86268 * 0.02562 * 7 6 5 9 9 C 1.37986 * 120.82151 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.45612 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.47551 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47211 * 300.00335 * 10 9 8 13 13 C 1.50702 * 109.46869 * 59.99891 * 10 9 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 10 9 16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 10 17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 10 18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13 19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13 21 21 H 1.08999 * 109.46956 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47304 * 299.99871 * 1 2 3 23 23 H 1.09002 * 109.47285 * 60.00258 * 1 2 3 24 24 H 1.08999 * 109.47304 * 240.00128 * 2 1 3 25 25 H 1.09001 * 109.47703 * 120.00069 * 2 1 3 26 26 H 1.08001 * 120.45407 * 0.02562 * 5 4 3 27 27 H 1.07999 * 119.59163 * 179.71916 * 6 5 4 28 28 H 1.07997 * 119.58970 * 179.97438 * 8 7 6 29 29 H 1.09003 * 109.46851 * 299.99806 * 12 10 9 30 30 H 1.09003 * 109.47532 * 59.99881 * 12 10 9 31 31 H 1.09001 * 109.47094 * 179.97438 * 12 10 9 32 32 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3520 1.5251 -0.0005 5 6 4.2167 0.4333 -0.0063 6 6 5.5781 0.6558 -0.0004 7 7 6.0627 1.8834 0.0046 8 6 5.2760 2.9428 0.0048 9 6 3.9032 2.8039 0.0002 10 6 3.0125 4.0195 0.0011 11 1 1.9688 3.7053 -0.0035 12 6 3.2891 4.8536 1.2535 13 6 3.2924 4.8482 -1.2262 14 1 4.0402 4.5265 -1.9360 15 6 2.5895 6.0138 -1.4460 16 7 2.8299 6.7341 -2.5198 17 14 1.2957 6.5699 -0.2187 18 1 1.9275 7.4372 0.8078 19 1 0.2366 7.3325 -0.9273 20 1 0.6943 5.3820 0.4390 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 3.8268 -0.5739 -0.0108 27 1 6.2559 -0.1850 -0.0002 28 1 5.7121 3.9308 0.0094 29 1 3.0866 4.2542 2.1412 30 1 4.3328 5.1679 1.2576 31 1 2.6451 5.7331 1.2539 32 1 2.3357 7.5543 -2.6742 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261018409.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:53 Heat of formation + Delta-G solvation = -31.190713 kcal Electronic energy + Delta-G solvation = -15068.945520 eV Core-core repulsion = 12607.958218 eV Total energy + Delta-G solvation = -2460.987302 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.59887 -39.20415 -36.70621 -33.94833 -32.90085 -31.63444 -30.46784 -27.10845 -25.56075 -24.47230 -23.12934 -21.63641 -19.34636 -18.85189 -17.51632 -17.12658 -16.93211 -15.89354 -15.73094 -14.92665 -14.91120 -14.72850 -14.68280 -14.05920 -13.57742 -13.50215 -13.34471 -13.00265 -12.89652 -12.46708 -12.04981 -11.81942 -11.81639 -11.35072 -11.22063 -10.74336 -10.33494 -9.95874 -9.47963 -8.29375 -6.33240 0.27038 0.49021 1.30496 1.36643 1.47541 2.21941 2.32855 2.94238 3.07551 3.63629 3.80986 3.97374 4.06219 4.18891 4.23648 4.36235 4.39382 4.57914 4.69817 4.77081 4.85844 4.93502 4.95495 5.04833 5.13176 5.21184 5.25553 5.62528 5.66164 5.79491 6.27442 6.42918 6.71438 7.15375 7.31165 8.87191 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.023764 B = 0.010923 C = 0.008452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.962811 B = 2562.797143 C = 3312.195636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.041 3.959 3 O -0.328 6.328 4 C 0.148 3.852 5 C -0.253 4.253 6 C 0.112 3.888 7 N -0.529 5.529 8 C 0.124 3.876 9 C -0.143 4.143 10 C 0.054 3.946 11 H 0.032 0.968 12 C -0.140 4.140 13 C -0.508 4.508 14 H 0.032 0.968 15 C 0.015 3.985 16 N -0.947 5.947 17 Si 0.949 3.051 18 H -0.262 1.262 19 H -0.298 1.298 20 H -0.252 1.252 21 H 0.110 0.890 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.171 0.829 27 H 0.192 0.808 28 H 0.149 0.851 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.035 0.965 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.567 -15.314 8.516 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.034 4.034 3 O -0.241 6.241 4 C 0.095 3.905 5 C -0.274 4.274 6 C -0.045 4.045 7 N -0.242 5.242 8 C -0.030 4.030 9 C -0.146 4.146 10 C 0.034 3.966 11 H 0.050 0.950 12 C -0.197 4.197 13 C -0.546 4.546 14 H 0.050 0.950 15 C -0.182 4.182 16 N -0.588 5.588 17 Si 0.776 3.224 18 H -0.188 1.188 19 H -0.226 1.226 20 H -0.176 1.176 21 H 0.128 0.872 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.189 0.811 27 H 0.209 0.791 28 H 0.166 0.834 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.913 -14.911 8.428 17.235 hybrid contribution -1.331 0.588 -0.136 1.461 sum -3.244 -14.323 8.291 16.865 Atomic orbital electron populations 1.21823 0.91708 1.04366 1.02823 1.23189 0.96945 0.80441 1.02776 1.86130 1.18304 1.31883 1.87756 1.19361 0.83562 0.93854 0.93744 1.22428 0.95088 0.99408 1.10447 1.23094 0.93393 0.94722 0.93333 1.67719 1.40575 0.99796 1.16074 1.22378 0.88957 0.97778 0.93897 1.20556 0.95952 0.93846 1.04242 1.17930 0.94576 0.90265 0.93811 0.94973 1.22080 1.01417 0.98825 0.97359 1.21165 1.20957 1.06322 1.06142 0.95007 1.25824 0.98888 0.96423 0.97100 1.70039 1.43602 1.16131 1.28997 0.85836 0.78698 0.79038 0.78792 1.18803 1.22586 1.17572 0.87164 0.92080 0.92791 0.90848 0.89937 0.81150 0.79105 0.83393 0.92570 0.92348 0.94626 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 10.28 71.98 0.74 -2.13 16 2 C 0.04 0.91 5.49 71.98 0.39 1.31 16 3 O -0.33 -11.58 9.03 -90.60 -0.82 -12.39 16 4 C 0.15 5.49 6.70 22.77 0.15 5.65 16 5 C -0.25 -7.20 9.11 22.45 0.20 -7.00 16 6 C 0.11 3.25 11.17 84.60 0.95 4.19 16 7 N -0.53 -19.61 10.36 -196.09 -2.03 -21.64 16 8 C 0.12 5.19 9.90 84.62 0.84 6.02 16 9 C -0.14 -6.22 4.75 -19.68 -0.09 -6.32 16 10 C 0.05 2.62 2.06 -12.29 -0.03 2.59 16 11 H 0.03 1.64 6.15 -2.39 -0.01 1.62 16 12 C -0.14 -6.03 8.49 71.98 0.61 -5.42 16 13 C -0.51 -29.67 8.83 25.60 0.23 -29.44 16 14 H 0.03 2.07 7.85 -2.91 -0.02 2.05 16 15 C 0.01 0.87 5.45 84.66 0.46 1.33 16 16 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 17 Si 0.95 45.88 24.37 68.60 1.67 47.55 16 18 H -0.26 -11.91 6.87 99.48 0.68 -11.22 16 19 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 20 H -0.25 -11.51 6.52 99.48 0.65 -10.86 16 21 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.07 1.45 7.70 -2.39 -0.02 1.43 16 25 H 0.08 1.46 7.72 -2.39 -0.02 1.44 16 26 H 0.17 3.31 6.47 -2.91 -0.02 3.29 16 27 H 0.19 3.75 8.06 -2.91 -0.02 3.73 16 28 H 0.15 6.36 7.59 -2.91 -0.02 6.34 16 29 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.06 2.43 7.41 -2.39 -0.02 2.41 16 31 H 0.04 1.56 3.29 -2.39 -0.01 1.55 16 32 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -71.14 263.59 4.60 -66.54 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 1.03 Total: 8.93 kcal Atomic # 6 Polarization: -33.67 SS G_CDS: 4.46 Total: -29.22 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -1.73 Total: -81.41 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -0.82 Total: -12.39 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.67 Total: 47.55 kcal Total: -71.14 4.60 -66.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261018409.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.345 kcal (2) G-P(sol) polarization free energy of solvation -71.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds