Wall clock time and date at job start Mon Mar 30 2020 03:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30764 * 1 3 3 Si 1.86803 * 119.99786 * 2 1 4 4 H 1.48496 * 109.47191 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46768 * 120.00123 * 3 2 1 6 6 H 1.48498 * 109.47283 * 240.00374 * 3 2 1 7 7 C 1.40165 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00029 * 179.97438 * 7 2 1 9 9 C 1.40236 * 120.00108 * 359.97438 * 7 2 1 10 10 C 1.39809 * 126.65957 * 0.02562 * 9 7 2 11 11 C 1.38696 * 107.53382 * 180.02562 * 10 9 7 12 12 N 1.31228 * 109.08387 * 359.97438 * 11 10 9 13 13 N 1.37454 * 126.66300 * 179.71503 * 9 7 2 14 14 C 1.46498 * 126.20154 * 359.96252 * 13 9 7 15 15 H 1.09000 * 110.01933 * 359.93906 * 14 13 9 16 16 C 1.53880 * 110.03517 * 238.54832 * 14 13 9 17 17 C 1.54262 * 106.60165 * 240.71603 * 16 14 13 18 18 C 1.54894 * 104.19457 * 23.60757 * 17 16 14 19 19 H 1.09002 * 110.75298 * 80.55442 * 18 17 16 20 20 N 1.46899 * 110.75678 * 203.74487 * 18 17 16 21 21 C 1.54268 * 110.03491 * 121.38261 * 14 13 9 22 22 H 0.97001 * 119.99913 * 359.97438 * 1 2 3 23 23 H 1.08004 * 126.22803 * 0.02562 * 10 9 7 24 24 H 1.08005 * 125.45516 * 179.97438 * 11 10 9 25 25 H 1.08999 * 110.02816 * 0.02562 * 16 14 13 26 26 H 1.09002 * 110.03488 * 121.42861 * 16 14 13 27 27 H 1.08998 * 110.49016 * 142.28568 * 17 16 14 28 28 H 1.09003 * 110.48948 * 264.80116 * 17 16 14 29 29 H 1.00911 * 110.99680 * 298.54541 * 20 18 17 30 30 H 1.00895 * 111.00126 * 62.50050 * 20 18 17 31 31 H 1.09001 * 110.48858 * 214.35701 * 21 14 13 32 32 H 1.08997 * 110.48254 * 336.99725 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 1.2766 2.7465 0.0006 5 1 3.0953 1.6964 1.2125 6 1 3.0953 1.6966 -1.2125 7 6 2.0085 -1.2138 -0.0005 8 1 3.0886 -1.2138 -0.0010 9 6 1.3074 -2.4284 -0.0005 10 6 -0.0812 -2.5906 -0.0005 11 6 -0.3428 -3.9526 0.0000 12 7 0.7942 -4.6079 -0.0002 13 7 1.8520 -3.6904 -0.0065 14 6 3.2802 -4.0165 -0.0149 15 1 3.8719 -3.1011 -0.0169 16 6 3.6197 -4.8662 -1.2521 17 6 4.1678 -6.2093 -0.7274 18 6 3.5746 -6.3307 0.6983 19 1 2.5457 -6.6883 0.6594 20 7 4.3999 -7.2149 1.5320 21 6 3.6340 -4.8730 1.2185 22 1 -0.4850 0.8401 0.0004 23 1 -0.8163 -1.7993 -0.0009 24 1 -1.3250 -4.4020 0.0006 25 1 2.7218 -5.0355 -1.8465 26 1 4.3767 -4.3635 -1.8540 27 1 3.8252 -7.0323 -1.3545 28 1 5.2570 -6.1880 -0.6890 29 1 4.4323 -8.1475 1.1480 30 1 5.3291 -6.8390 1.6480 31 1 4.6367 -4.6350 1.5733 32 1 2.9017 -4.7207 2.0113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261033859.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:51 Heat of formation + Delta-G solvation = 34.936293 kcal Electronic energy + Delta-G solvation = -15152.822966 eV Core-core repulsion = 12726.995897 eV Total energy + Delta-G solvation = -2425.827069 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.03955 -38.99061 -35.55776 -34.19409 -31.74131 -30.43610 -29.02978 -27.09874 -26.72063 -22.49686 -21.72107 -21.30622 -20.01434 -18.76708 -17.55019 -17.13517 -16.40658 -16.03564 -15.14450 -15.04712 -14.41191 -14.12532 -14.02132 -13.77813 -13.44875 -13.26728 -12.93919 -12.54708 -12.41857 -12.17684 -12.10521 -11.83977 -11.66546 -11.60030 -11.27313 -10.61253 -9.69448 -9.56063 -8.73593 -8.50608 -6.46749 1.29201 1.40863 1.54438 1.80221 2.16436 2.41259 2.58432 3.32633 3.50617 3.55870 3.77345 4.17376 4.27419 4.33716 4.45550 4.49882 4.66797 4.74527 4.84806 4.93164 5.11897 5.12915 5.21295 5.39835 5.44462 5.59435 5.94531 6.11042 6.25429 6.52375 6.68063 6.76833 6.87436 7.29387 7.71651 8.40824 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036335 B = 0.008479 C = 0.007460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.415037 B = 3301.400348 C = 3752.634442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.032 3.968 3 Si 1.000 3.000 4 H -0.267 1.267 5 H -0.259 1.259 6 H -0.258 1.258 7 C -0.481 4.481 8 H 0.082 0.918 9 C 0.223 3.777 10 C -0.396 4.396 11 C 0.026 3.974 12 N -0.389 5.389 13 N -0.422 5.422 14 C 0.163 3.837 15 H 0.091 0.909 16 C -0.122 4.122 17 C -0.137 4.137 18 C 0.101 3.899 19 H 0.065 0.935 20 N -0.843 5.843 21 C -0.111 4.111 22 H 0.286 0.714 23 H 0.141 0.859 24 H 0.170 0.830 25 H 0.045 0.955 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.351 0.649 30 H 0.349 0.651 31 H 0.096 0.904 32 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.732 -4.803 -0.740 10.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.184 4.184 3 Si 0.820 3.180 4 H -0.192 1.192 5 H -0.183 1.183 6 H -0.182 1.182 7 C -0.517 4.517 8 H 0.100 0.900 9 C 0.103 3.897 10 C -0.427 4.427 11 C -0.155 4.155 12 N -0.212 5.212 13 N -0.210 5.210 14 C 0.059 3.941 15 H 0.109 0.891 16 C -0.161 4.161 17 C -0.177 4.177 18 C -0.011 4.011 19 H 0.083 0.917 20 N -0.374 5.374 21 C -0.150 4.150 22 H 0.097 0.903 23 H 0.159 0.841 24 H 0.187 0.813 25 H 0.064 0.936 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.109 0.891 29 H 0.165 0.835 30 H 0.163 0.837 31 H 0.114 0.886 32 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.626 -5.779 -0.150 11.228 hybrid contribution -0.170 1.504 -0.875 1.748 sum 9.456 -4.275 -1.025 10.427 Atomic orbital electron populations 1.69824 1.09052 1.29984 1.35626 1.26805 0.95727 1.04463 0.91399 0.84983 0.78333 0.74643 0.80048 1.19175 1.18280 1.18183 1.18950 0.94576 0.89408 1.48721 0.89989 1.19181 0.92758 0.85305 0.92433 1.22192 0.95584 0.95332 1.29634 1.23514 0.96986 0.94176 1.00862 1.76700 0.93977 1.16757 1.33726 1.48895 1.04451 1.02943 1.64759 1.21686 0.77266 0.98805 0.96314 0.89108 1.22382 1.00651 0.96535 0.96501 1.23044 1.01038 0.96250 0.97370 1.22155 0.97041 0.91837 0.90116 0.91712 1.58732 1.18512 1.06085 1.54023 1.22579 1.01509 0.94982 0.95944 0.90289 0.84131 0.81255 0.93642 0.89794 0.91185 0.89098 0.83536 0.83716 0.88602 0.94239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.45 10.30 21.87 0.23 -43.23 16 2 C 0.03 1.64 5.50 85.32 0.47 2.10 16 3 Si 1.00 37.61 29.56 68.60 2.03 39.64 16 4 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 5 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 6 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 7 C -0.48 -25.89 9.05 23.22 0.21 -25.68 16 8 H 0.08 4.08 6.77 -2.91 -0.02 4.06 16 9 C 0.22 12.66 6.75 39.13 0.26 12.92 16 10 C -0.40 -22.87 9.77 22.76 0.22 -22.65 16 11 C 0.03 1.36 11.93 84.89 1.01 2.37 16 12 N -0.39 -20.13 12.30 -57.58 -0.71 -20.84 16 13 N -0.42 -21.30 3.24 -315.48 -1.02 -22.32 16 14 C 0.16 6.46 3.72 45.72 0.17 6.63 16 15 H 0.09 3.55 6.76 -2.39 -0.02 3.54 16 16 C -0.12 -4.07 6.54 31.32 0.20 -3.86 16 17 C -0.14 -3.55 6.51 31.67 0.21 -3.35 16 18 C 0.10 3.03 4.06 46.21 0.19 3.21 16 19 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 20 N -0.84 -19.67 9.39 -163.34 -1.53 -21.20 16 21 C -0.11 -3.86 6.13 31.67 0.19 -3.67 16 22 H 0.29 13.68 8.29 -92.71 -0.77 12.91 16 23 H 0.14 8.44 5.73 -2.91 -0.02 8.43 16 24 H 0.17 7.55 8.06 -2.91 -0.02 7.52 16 25 H 0.04 1.81 7.82 -2.39 -0.02 1.79 16 26 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.35 6.68 9.07 -89.68 -0.81 5.86 16 30 H 0.35 6.59 8.85 -89.70 -0.79 5.79 16 31 H 0.10 2.71 7.99 -2.39 -0.02 2.69 16 32 H 0.04 1.65 8.04 -2.39 -0.02 1.63 16 Total: -1.00 -65.15 266.03 1.66 -63.49 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: -0.47 Total: 36.43 kcal Atomic # 6 Polarization: -35.11 SS G_CDS: 3.14 Total: -31.97 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -3.04 Total: -107.59 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.64 kcal Total: -65.15 1.66 -63.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261033859.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.424 kcal (2) G-P(sol) polarization free energy of solvation -65.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds