Wall clock time and date at job start Mon Mar 30 2020 03:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30765 * 1 3 3 Si 1.86795 * 119.99732 * 2 1 4 4 H 1.48499 * 109.47183 * 270.00203 * 3 2 1 5 5 H 1.48498 * 109.47458 * 30.00165 * 3 2 1 6 6 H 1.48501 * 109.46925 * 149.99934 * 3 2 1 7 7 C 1.40162 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99737 * 179.97438 * 7 2 1 9 9 C 1.40238 * 119.99887 * 0.02562 * 7 2 1 10 10 C 1.39807 * 126.66202 * 0.04010 * 9 7 2 11 11 C 1.38701 * 107.53255 * 179.97438 * 10 9 7 12 12 N 1.31236 * 109.08564 * 0.02562 * 11 10 9 13 13 N 1.37465 * 126.65586 * 180.02562 * 9 7 2 14 14 C 1.46492 * 126.20547 * 359.76631 * 13 9 7 15 15 H 1.09003 * 110.01786 * 0.06541 * 14 13 9 16 16 C 1.53877 * 110.03262 * 121.45387 * 14 13 9 17 17 C 1.54275 * 106.59620 * 119.28344 * 16 14 13 18 18 C 1.54888 * 104.19394 * 23.61441 * 17 16 14 19 19 H 1.09000 * 110.75908 * 80.37260 * 18 17 16 20 20 N 1.46901 * 110.75589 * 203.55405 * 18 17 16 21 21 C 1.54264 * 110.03439 * 238.62177 * 14 13 9 22 22 H 0.96999 * 120.00427 * 359.97438 * 1 2 3 23 23 H 1.07991 * 126.23407 * 359.96502 * 10 9 7 24 24 H 1.08002 * 125.45931 * 179.97438 * 11 10 9 25 25 H 1.08992 * 110.03646 * 238.56920 * 16 14 13 26 26 H 1.09000 * 110.03307 * 359.95634 * 16 14 13 27 27 H 1.09004 * 110.48344 * 142.29028 * 17 16 14 28 28 H 1.08993 * 110.48711 * 264.79886 * 17 16 14 29 29 H 1.00898 * 111.00421 * 298.55173 * 20 18 17 30 30 H 1.00909 * 110.99776 * 62.50095 * 20 18 17 31 31 H 1.08997 * 110.48815 * 335.78648 * 21 14 13 32 32 H 1.09002 * 110.48712 * 98.42929 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0465 -1.4001 5 1 1.4390 2.6527 0.7000 6 1 3.5391 1.4402 0.7001 7 6 2.0085 -1.2138 -0.0005 8 1 3.0885 -1.2138 -0.0010 9 6 1.3073 -2.4283 -0.0016 10 6 -0.0814 -2.5905 -0.0031 11 6 -0.3430 -3.9526 -0.0043 12 7 0.7941 -4.6079 -0.0032 13 7 1.8520 -3.6904 -0.0018 14 6 3.2801 -4.0165 -0.0056 15 1 3.8719 -3.1011 -0.0073 16 6 3.6297 -4.8679 1.2276 17 6 4.1735 -6.2104 0.6965 18 6 4.6830 -5.8770 -0.7277 19 1 5.6684 -5.4131 -0.6868 20 7 4.7122 -7.0832 -1.5658 21 6 3.6237 -4.8713 -1.2430 22 1 -0.4851 0.8400 0.0004 23 1 -0.8164 -1.7994 -0.0030 24 1 -1.3250 -4.4020 -0.0052 25 1 4.3917 -4.3661 1.8239 26 1 2.7369 -5.0378 1.8293 27 1 4.9933 -6.5641 1.3218 28 1 3.3782 -6.9545 0.6549 29 1 5.3411 -7.7737 -1.1840 30 1 3.7853 -7.4643 -1.6835 31 1 2.7390 -5.3985 -1.6001 32 1 4.0422 -4.2479 -2.0331 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261033862.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:54 Heat of formation + Delta-G solvation = 54.297106 kcal Electronic energy + Delta-G solvation = -15098.762127 eV Core-core repulsion = 12673.774606 eV Total energy + Delta-G solvation = -2424.987521 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.20779 -37.55449 -33.62315 -32.83131 -30.08427 -28.64036 -27.57792 -25.28672 -24.99312 -20.81541 -20.24826 -19.60931 -18.22216 -17.04028 -16.05545 -15.54809 -14.79893 -14.51779 -13.89772 -13.22973 -12.88294 -12.73938 -12.22234 -11.91969 -11.87220 -11.59142 -11.32135 -11.05146 -10.92434 -10.74727 -10.48920 -10.45368 -10.17988 -9.73937 -9.43330 -8.61481 -8.55455 -7.73332 -6.72851 -6.60908 -4.43771 2.94186 3.06765 3.10069 3.64536 3.87031 4.15409 4.55856 4.63882 4.91623 5.15706 5.24265 5.40012 5.65848 5.75847 5.86741 5.86997 5.90447 6.09065 6.34749 6.50249 6.53497 6.66802 6.68428 7.07452 7.23579 7.38772 7.52388 7.55909 7.90357 8.16070 8.52719 8.75676 8.89244 9.26454 9.70974 10.27925 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034196 B = 0.008500 C = 0.007374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.608126 B = 3293.285081 C = 3796.198722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.077 3.923 3 Si 0.921 3.079 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.452 4.452 8 H 0.073 0.927 9 C 0.251 3.749 10 C -0.360 4.360 11 C 0.035 3.965 12 N -0.391 5.391 13 N -0.422 5.422 14 C 0.181 3.819 15 H 0.092 0.908 16 C -0.127 4.127 17 C -0.151 4.151 18 C 0.087 3.913 19 H 0.085 0.915 20 N -0.842 5.842 21 C -0.122 4.122 22 H 0.277 0.723 23 H 0.157 0.843 24 H 0.142 0.858 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.336 0.664 30 H 0.342 0.658 31 H 0.081 0.919 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.920 -5.064 0.512 8.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.142 4.142 3 Si 0.746 3.254 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.488 4.488 8 H 0.091 0.909 9 C 0.132 3.868 10 C -0.392 4.392 11 C -0.146 4.146 12 N -0.214 5.214 13 N -0.210 5.210 14 C 0.076 3.924 15 H 0.110 0.890 16 C -0.166 4.166 17 C -0.191 4.191 18 C -0.025 4.025 19 H 0.103 0.897 20 N -0.370 5.370 21 C -0.161 4.161 22 H 0.088 0.912 23 H 0.174 0.826 24 H 0.160 0.840 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.148 0.852 30 H 0.155 0.845 31 H 0.100 0.900 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.620 -5.652 -0.070 9.487 hybrid contribution -0.460 1.128 0.925 1.529 sum 7.161 -4.524 0.856 8.513 Atomic orbital electron populations 1.69740 1.07372 1.28366 1.35937 1.25729 0.94860 1.00921 0.92669 0.86101 0.79998 0.80165 0.79137 1.19450 1.20117 1.18765 1.18595 0.93926 0.88832 1.47468 0.90914 1.18790 0.92247 0.83864 0.91913 1.22136 0.95169 0.94577 1.27277 1.23113 0.95602 0.94843 1.01031 1.76772 0.93721 1.16345 1.34596 1.48583 1.03007 1.03911 1.65509 1.21244 0.79562 0.97824 0.93780 0.89034 1.22421 1.01190 0.95057 0.97943 1.23105 0.99956 0.98201 0.97854 1.22429 0.98887 0.91372 0.89830 0.89660 1.58849 1.15130 1.09238 1.53794 1.22725 0.98708 0.97166 0.97456 0.91150 0.82609 0.84018 0.91892 0.90657 0.92335 0.91643 0.85209 0.84532 0.90040 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.50 10.30 55.56 0.57 -19.93 16 2 C 0.08 1.95 5.50 -17.28 -0.10 1.85 16 3 Si 0.92 18.68 29.56 -169.99 -5.03 13.65 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.45 -12.01 9.05 -38.11 -0.34 -12.36 16 8 H 0.07 1.81 6.77 -52.49 -0.36 1.46 16 9 C 0.25 6.92 6.75 -84.00 -0.57 6.35 16 10 C -0.36 -10.02 9.77 -38.82 -0.38 -10.40 16 11 C 0.03 0.89 11.93 -17.63 -0.21 0.67 16 12 N -0.39 -9.94 12.01 30.45 0.37 -9.58 16 13 N -0.42 -10.48 3.28 -51.07 -0.17 -10.65 16 14 C 0.18 3.64 3.72 -66.82 -0.25 3.39 16 15 H 0.09 1.83 6.76 -51.93 -0.35 1.48 16 16 C -0.13 -2.21 6.54 -25.61 -0.17 -2.38 16 17 C -0.15 -2.17 6.51 -25.07 -0.16 -2.33 16 18 C 0.09 1.23 4.05 -65.72 -0.27 0.97 16 19 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 20 N -0.84 -10.65 9.40 -2.98 -0.03 -10.68 16 21 C -0.12 -2.17 6.17 -25.07 -0.15 -2.32 16 22 H 0.28 6.53 8.29 -40.82 -0.34 6.20 16 23 H 0.16 4.46 5.73 -52.49 -0.30 4.16 16 24 H 0.14 3.11 8.06 -52.49 -0.42 2.68 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.07 1.52 7.83 -51.93 -0.41 1.11 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.34 3.45 9.07 -39.29 -0.36 3.10 16 30 H 0.34 4.35 8.87 -39.29 -0.35 4.00 16 31 H 0.08 1.64 7.60 -51.93 -0.39 1.24 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 265.55 15.07 4.00 4.00 Total: -1.00 -29.25 265.55 -7.06 -36.31 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -4.18 Total: 13.42 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -2.60 Total: -16.55 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: 0.74 Total: -50.83 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.25 -7.06 -36.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261033862.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.608 kcal (2) G-P(sol) polarization free energy of solvation -29.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds