Wall clock time and date at job start Mon Mar 30 2020 03:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30765 * 1 3 3 Si 1.86795 * 119.99732 * 2 1 4 4 H 1.48499 * 109.47183 * 270.00203 * 3 2 1 5 5 H 1.48498 * 109.47458 * 30.00165 * 3 2 1 6 6 H 1.48501 * 109.46925 * 149.99934 * 3 2 1 7 7 C 1.40162 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99737 * 179.97438 * 7 2 1 9 9 C 1.40238 * 119.99887 * 0.02562 * 7 2 1 10 10 C 1.39807 * 126.66202 * 0.04010 * 9 7 2 11 11 C 1.38701 * 107.53255 * 179.97438 * 10 9 7 12 12 N 1.31236 * 109.08564 * 0.02562 * 11 10 9 13 13 N 1.37465 * 126.65586 * 180.02562 * 9 7 2 14 14 C 1.46492 * 126.20547 * 359.76631 * 13 9 7 15 15 H 1.09003 * 110.01786 * 0.06541 * 14 13 9 16 16 C 1.53877 * 110.03262 * 121.45387 * 14 13 9 17 17 C 1.54275 * 106.59620 * 119.28344 * 16 14 13 18 18 C 1.54888 * 104.19394 * 23.61441 * 17 16 14 19 19 H 1.09000 * 110.75908 * 80.37260 * 18 17 16 20 20 N 1.46901 * 110.75589 * 203.55405 * 18 17 16 21 21 C 1.54264 * 110.03439 * 238.62177 * 14 13 9 22 22 H 0.96999 * 120.00427 * 359.97438 * 1 2 3 23 23 H 1.07991 * 126.23407 * 359.96502 * 10 9 7 24 24 H 1.08002 * 125.45931 * 179.97438 * 11 10 9 25 25 H 1.08992 * 110.03646 * 238.56920 * 16 14 13 26 26 H 1.09000 * 110.03307 * 359.95634 * 16 14 13 27 27 H 1.09004 * 110.48344 * 142.29028 * 17 16 14 28 28 H 1.08993 * 110.48711 * 264.79886 * 17 16 14 29 29 H 1.00898 * 111.00421 * 298.55173 * 20 18 17 30 30 H 1.00909 * 110.99776 * 62.50095 * 20 18 17 31 31 H 1.08997 * 110.48815 * 335.78648 * 21 14 13 32 32 H 1.09002 * 110.48712 * 98.42929 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0465 -1.4001 5 1 1.4390 2.6527 0.7000 6 1 3.5391 1.4402 0.7001 7 6 2.0085 -1.2138 -0.0005 8 1 3.0885 -1.2138 -0.0010 9 6 1.3073 -2.4283 -0.0016 10 6 -0.0814 -2.5905 -0.0031 11 6 -0.3430 -3.9526 -0.0043 12 7 0.7941 -4.6079 -0.0032 13 7 1.8520 -3.6904 -0.0018 14 6 3.2801 -4.0165 -0.0056 15 1 3.8719 -3.1011 -0.0073 16 6 3.6297 -4.8679 1.2276 17 6 4.1735 -6.2104 0.6965 18 6 4.6830 -5.8770 -0.7277 19 1 5.6684 -5.4131 -0.6868 20 7 4.7122 -7.0832 -1.5658 21 6 3.6237 -4.8713 -1.2430 22 1 -0.4851 0.8400 0.0004 23 1 -0.8164 -1.7994 -0.0030 24 1 -1.3250 -4.4020 -0.0052 25 1 4.3917 -4.3661 1.8239 26 1 2.7369 -5.0378 1.8293 27 1 4.9933 -6.5641 1.3218 28 1 3.3782 -6.9545 0.6549 29 1 5.3411 -7.7737 -1.1840 30 1 3.7853 -7.4643 -1.6835 31 1 2.7390 -5.3985 -1.6001 32 1 4.0422 -4.2479 -2.0331 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261033862.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:53 Heat of formation + Delta-G solvation = 34.393334 kcal Electronic energy + Delta-G solvation = -15099.625219 eV Core-core repulsion = 12673.774606 eV Total energy + Delta-G solvation = -2425.850613 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.03062 -39.02711 -35.57312 -34.20207 -31.75634 -30.46648 -29.10015 -27.09748 -26.64215 -22.48529 -21.73269 -21.32876 -20.01458 -18.86246 -17.57705 -17.15642 -16.23319 -15.94621 -15.36981 -14.93417 -14.47631 -14.31741 -13.93371 -13.78038 -13.47460 -13.25749 -12.94421 -12.53623 -12.46998 -12.15648 -12.08921 -11.89397 -11.70695 -11.55545 -11.29025 -10.63131 -9.70673 -9.59738 -8.74979 -8.51875 -6.48231 1.27051 1.40857 1.55763 1.78412 2.15650 2.38993 2.56621 3.30897 3.47818 3.59524 3.87030 4.01433 4.27977 4.31450 4.45102 4.48308 4.64866 4.69762 4.86273 4.98883 5.10403 5.11774 5.22434 5.32122 5.44439 5.57670 5.94170 6.09423 6.19169 6.50933 6.61518 6.75119 6.86160 7.27602 7.69357 8.39778 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034196 B = 0.008500 C = 0.007374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.608126 B = 3293.285081 C = 3796.198722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.033 3.967 3 Si 1.001 2.999 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.255 1.255 7 C -0.480 4.480 8 H 0.082 0.918 9 C 0.223 3.777 10 C -0.396 4.396 11 C 0.028 3.972 12 N -0.394 5.394 13 N -0.423 5.423 14 C 0.164 3.836 15 H 0.090 0.910 16 C -0.122 4.122 17 C -0.139 4.139 18 C 0.102 3.898 19 H 0.105 0.895 20 N -0.842 5.842 21 C -0.117 4.117 22 H 0.286 0.714 23 H 0.142 0.858 24 H 0.172 0.828 25 H 0.084 0.916 26 H 0.043 0.957 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.354 0.646 30 H 0.341 0.659 31 H 0.055 0.945 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.059 -5.042 0.660 10.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.184 4.184 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.178 1.178 7 C -0.516 4.516 8 H 0.100 0.900 9 C 0.103 3.897 10 C -0.428 4.428 11 C -0.153 4.153 12 N -0.217 5.217 13 N -0.212 5.212 14 C 0.061 3.939 15 H 0.108 0.892 16 C -0.161 4.161 17 C -0.179 4.179 18 C -0.010 4.010 19 H 0.123 0.877 20 N -0.372 5.372 21 C -0.156 4.156 22 H 0.097 0.903 23 H 0.159 0.841 24 H 0.189 0.811 25 H 0.103 0.897 26 H 0.062 0.938 27 H 0.109 0.891 28 H 0.073 0.927 29 H 0.168 0.832 30 H 0.154 0.846 31 H 0.073 0.927 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.778 -5.679 0.079 11.308 hybrid contribution -1.162 1.095 0.868 1.817 sum 8.616 -4.585 0.947 9.806 Atomic orbital electron populations 1.69824 1.09049 1.29965 1.35587 1.26808 0.95735 1.04476 0.91370 0.84927 0.78696 0.74875 0.79487 1.18682 1.19101 1.17832 1.18980 0.94585 0.89400 1.48591 0.90008 1.19204 0.92794 0.85318 0.92371 1.22202 0.95574 0.95360 1.29620 1.23517 0.96945 0.94157 1.00687 1.76675 0.94035 1.16897 1.34083 1.48886 1.04467 1.02977 1.64831 1.21688 0.77130 0.98762 0.96329 0.89220 1.22368 1.00557 0.96670 0.96529 1.23053 1.00530 0.96003 0.98313 1.22299 0.98269 0.91130 0.89343 0.87721 1.58802 1.15578 1.09355 1.53454 1.22626 0.98910 0.97606 0.96415 0.90259 0.84067 0.81132 0.89712 0.93825 0.89052 0.92664 0.83209 0.84594 0.92666 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.32 10.30 21.87 0.23 -43.09 16 2 C 0.03 1.64 5.50 85.32 0.47 2.11 16 3 Si 1.00 37.64 29.56 68.60 2.03 39.67 16 4 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 5 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 6 H -0.25 -9.15 7.11 99.48 0.71 -8.45 16 7 C -0.48 -25.88 9.05 23.22 0.21 -25.67 16 8 H 0.08 4.10 6.77 -2.91 -0.02 4.08 16 9 C 0.22 12.66 6.75 39.13 0.26 12.93 16 10 C -0.40 -22.84 9.77 22.76 0.22 -22.61 16 11 C 0.03 1.46 11.93 84.89 1.01 2.47 16 12 N -0.39 -20.40 12.01 -57.57 -0.69 -21.10 16 13 N -0.42 -21.45 3.28 -315.49 -1.03 -22.49 16 14 C 0.16 6.58 3.72 45.72 0.17 6.75 16 15 H 0.09 3.57 6.76 -2.39 -0.02 3.55 16 16 C -0.12 -4.12 6.54 31.32 0.20 -3.92 16 17 C -0.14 -3.63 6.51 31.67 0.21 -3.43 16 18 C 0.10 2.63 4.05 46.21 0.19 2.81 16 19 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 20 N -0.84 -19.07 9.40 -163.35 -1.54 -20.61 16 21 C -0.12 -4.08 6.17 31.67 0.20 -3.89 16 22 H 0.29 13.61 8.29 -92.71 -0.77 12.84 16 23 H 0.14 8.45 5.73 -2.92 -0.02 8.44 16 24 H 0.17 7.53 8.06 -2.91 -0.02 7.51 16 25 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.04 1.75 7.83 -2.39 -0.02 1.73 16 27 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.35 6.05 9.07 -89.70 -0.81 5.23 16 30 H 0.34 8.05 8.87 -89.69 -0.80 7.25 16 31 H 0.05 2.23 7.60 -2.39 -0.02 2.21 16 32 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -64.55 265.55 1.67 -62.88 By element: Atomic # 1 Polarization: 37.64 SS G_CDS: -0.47 Total: 37.17 kcal Atomic # 6 Polarization: -35.58 SS G_CDS: 3.14 Total: -32.44 kcal Atomic # 7 Polarization: -104.24 SS G_CDS: -3.04 Total: -107.28 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.67 kcal Total: -64.55 1.67 -62.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261033862.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.274 kcal (2) G-P(sol) polarization free energy of solvation -64.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds