Wall clock time and date at job start Mon Mar 30 2020 02:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99904 * 2 1 4 4 C 1.53006 * 109.47088 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46808 * 184.99671 * 4 3 2 6 6 C 1.50691 * 109.46967 * 304.99906 * 4 3 2 7 7 H 1.08004 * 120.00258 * 120.00304 * 6 4 3 8 8 C 1.37885 * 120.00049 * 300.00017 * 6 4 3 9 9 N 1.31507 * 119.99883 * 0.02562 * 8 6 4 10 10 Si 1.86796 * 119.99947 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47281 * 89.99828 * 10 8 6 12 12 H 1.48498 * 109.47306 * 209.99680 * 10 8 6 13 13 H 1.48504 * 109.47353 * 330.00276 * 10 8 6 14 14 N 1.46504 * 109.46995 * 65.00015 * 4 3 2 15 15 C 1.39675 * 119.99953 * 84.99911 * 14 4 3 16 16 C 1.38914 * 120.07282 * 179.97438 * 15 14 4 17 17 C 1.38100 * 119.92419 * 180.02562 * 16 15 14 18 18 C 1.38288 * 120.07489 * 359.97438 * 17 16 15 19 19 C 1.38283 * 120.14964 * 0.27921 * 18 17 16 20 20 C 1.38104 * 120.07445 * 359.44998 * 19 18 17 21 21 H 1.09002 * 109.46723 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47133 * 299.99922 * 1 2 3 23 23 H 1.08993 * 109.47171 * 60.00449 * 1 2 3 24 24 H 1.08999 * 109.47506 * 59.99875 * 3 2 1 25 25 H 1.08999 * 109.47067 * 299.99684 * 3 2 1 26 26 H 0.97002 * 120.00145 * 180.02562 * 9 8 6 27 27 H 0.96997 * 119.99634 * 264.99860 * 14 4 3 28 28 H 1.07999 * 120.03435 * 0.04102 * 16 15 14 29 29 H 1.08000 * 119.95830 * 180.02562 * 17 16 15 30 30 H 1.08002 * 119.92149 * 179.97438 * 18 17 16 31 31 H 1.08001 * 119.96059 * 179.69879 * 19 18 17 32 32 H 1.07999 * 120.04053 * 180.27967 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.9785 2.1766 0.0889 6 6 3.9723 0.3325 1.1628 7 1 4.5229 -0.5800 0.9873 8 6 3.6692 0.7176 2.4517 9 7 2.9984 1.8283 2.6654 10 14 4.2113 -0.3385 3.8939 11 1 5.5579 0.0946 4.3460 12 1 3.2426 -0.1880 5.0094 13 1 4.2646 -1.7616 3.4730 14 7 3.9756 0.5644 -1.2528 15 6 4.1712 1.3506 -2.3906 16 6 4.5891 0.7642 -3.5785 17 6 4.7820 1.5445 -4.7015 18 6 4.5591 2.9081 -4.6445 19 6 4.1482 3.4959 -3.4622 20 6 3.9479 2.7206 -2.3369 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 1.6886 1.8464 0.8899 25 1 1.6886 1.8464 -0.8900 26 1 2.7855 2.0995 3.5721 27 1 4.1313 -0.3922 -1.2916 28 1 4.7627 -0.3008 -3.6238 29 1 5.1065 1.0891 -5.6254 30 1 4.7112 3.5161 -5.5241 31 1 3.9797 4.5618 -3.4198 32 1 3.6226 3.1796 -1.4150 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261040177.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:45 Heat of formation + Delta-G solvation = -36.827931 kcal Electronic energy + Delta-G solvation = -14946.993043 eV Core-core repulsion = 12485.761293 eV Total energy + Delta-G solvation = -2461.231750 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.21426 -38.61806 -36.42391 -34.53272 -31.77164 -31.05993 -28.64370 -27.52863 -26.38094 -23.64770 -23.01745 -21.50585 -19.03827 -17.84534 -17.20394 -16.83155 -16.64894 -16.13356 -15.98929 -15.40043 -14.82585 -14.58951 -14.16639 -14.00401 -13.68387 -13.18759 -12.89070 -12.83272 -12.64138 -12.30887 -12.16078 -11.95349 -11.62735 -11.26284 -10.81320 -10.54046 -10.24606 -9.69350 -8.20210 -8.02650 -6.28513 0.67709 0.92687 1.41398 1.42429 1.52563 2.38590 2.94686 3.12843 3.17560 3.28988 4.17170 4.27123 4.43902 4.49628 4.55713 4.61509 4.76286 4.78108 4.84131 4.94230 4.97671 5.15537 5.29582 5.36345 5.61376 5.68137 5.76223 5.86892 6.02332 6.25064 6.53157 6.65012 6.86753 7.23142 7.41060 8.88240 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031441 B = 0.008225 C = 0.007489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.339470 B = 3403.638505 C = 3737.735889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.393 6.393 3 C 0.071 3.929 4 C 0.283 3.717 5 H 0.027 0.973 6 C -0.525 4.525 7 H 0.057 0.943 8 C 0.022 3.978 9 N -0.918 5.918 10 Si 0.963 3.037 11 H -0.275 1.275 12 H -0.282 1.282 13 H -0.271 1.271 14 N -0.727 5.727 15 C 0.208 3.792 16 C -0.222 4.222 17 C -0.070 4.070 18 C -0.199 4.199 19 C -0.075 4.075 20 C -0.232 4.232 21 H 0.096 0.904 22 H 0.028 0.972 23 H 0.039 0.961 24 H 0.057 0.943 25 H 0.010 0.990 26 H 0.265 0.735 27 H 0.394 0.606 28 H 0.125 0.875 29 H 0.146 0.854 30 H 0.142 0.858 31 H 0.134 0.866 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.520 -0.052 -9.850 9.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.312 6.312 3 C -0.007 4.007 4 C 0.178 3.822 5 H 0.044 0.956 6 C -0.564 4.564 7 H 0.075 0.925 8 C -0.178 4.178 9 N -0.557 5.557 10 Si 0.788 3.212 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.196 1.196 14 N -0.351 5.351 15 C 0.101 3.899 16 C -0.245 4.245 17 C -0.089 4.089 18 C -0.220 4.220 19 C -0.094 4.094 20 C -0.256 4.256 21 H 0.114 0.886 22 H 0.047 0.953 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.028 0.972 26 H 0.074 0.926 27 H 0.227 0.773 28 H 0.143 0.857 29 H 0.164 0.836 30 H 0.160 0.840 31 H 0.152 0.848 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.549 -0.019 -9.491 9.506 hybrid contribution -0.149 -0.416 1.215 1.293 sum -0.698 -0.434 -8.275 8.316 Atomic orbital electron populations 1.22763 0.81982 1.02794 0.99217 1.87873 1.19197 1.28923 1.95173 1.22867 0.96875 0.83592 0.97349 1.18407 0.88654 0.93721 0.81386 0.95568 1.21291 1.35615 1.08343 0.91129 0.92512 1.25560 0.94784 0.96286 1.01148 1.69947 1.40219 1.23754 1.21823 0.85481 0.77944 0.79138 0.78591 1.20088 1.20792 1.19590 1.45117 1.72543 1.09104 1.08356 1.18366 0.92477 0.91359 0.87683 1.20782 1.10705 1.00456 0.92530 1.21161 0.96279 0.93880 0.97551 1.21113 1.07065 0.95397 0.98395 1.21111 0.96317 0.99786 0.92184 1.20806 1.11825 0.92949 0.99984 0.88598 0.95322 0.94264 0.92514 0.97218 0.92617 0.77275 0.85749 0.83595 0.84033 0.84825 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.07 11.01 113.37 1.25 2.32 16 2 O -0.39 -18.64 10.13 -148.98 -1.51 -20.15 16 3 C 0.07 3.51 5.39 71.98 0.39 3.90 16 4 C 0.28 14.36 2.05 44.24 0.09 14.45 16 5 H 0.03 1.47 6.49 -2.39 -0.02 1.46 16 6 C -0.53 -28.66 8.25 25.60 0.21 -28.45 16 7 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 8 C 0.02 1.18 5.30 84.66 0.45 1.63 16 9 N -0.92 -51.48 11.37 21.45 0.24 -51.24 16 10 Si 0.96 43.48 29.54 68.60 2.03 45.51 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 14 N -0.73 -32.15 5.19 -322.50 -1.67 -33.83 16 15 C 0.21 8.29 6.64 38.21 0.25 8.54 16 16 C -0.22 -7.35 9.90 22.40 0.22 -7.13 16 17 C -0.07 -1.93 10.04 22.25 0.22 -1.71 16 18 C -0.20 -5.43 10.04 22.29 0.22 -5.20 16 19 C -0.08 -2.37 10.04 22.25 0.22 -2.15 16 20 C -0.23 -9.10 8.85 22.40 0.20 -8.90 16 21 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 22 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.06 3.07 6.22 -2.39 -0.01 3.05 16 25 H 0.01 0.46 7.80 -2.39 -0.02 0.44 16 26 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 27 H 0.39 16.72 8.55 -92.71 -0.79 15.93 16 28 H 0.12 3.71 8.06 -2.91 -0.02 3.69 16 29 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 30 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.13 3.49 8.06 -2.91 -0.02 3.46 16 32 H 0.10 4.24 6.21 -2.91 -0.02 4.22 16 Total: -1.00 -60.37 273.03 3.13 -57.23 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.32 Total: 25.18 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 3.73 Total: -22.70 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -1.43 Total: -85.07 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -1.51 Total: -20.15 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -60.37 3.13 -57.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040177.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.406 kcal (2) G-P(sol) polarization free energy of solvation -60.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds