Wall clock time and date at job start Mon Mar 30 2020 02:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.42898 * 113.99307 * 2 1 4 4 C 1.52999 * 109.46739 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47774 * 175.00392 * 4 3 2 6 6 C 1.50698 * 109.47226 * 55.00178 * 4 3 2 7 7 H 1.08001 * 120.00198 * 239.99890 * 6 4 3 8 8 C 1.37879 * 120.00266 * 60.00152 * 6 4 3 9 9 N 1.31517 * 119.99357 * 0.02562 * 8 6 4 10 10 Si 1.86798 * 120.00310 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47104 * 59.99749 * 10 8 6 12 12 H 1.48498 * 109.47090 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47145 * 299.99655 * 10 8 6 14 14 N 1.46507 * 109.47244 * 295.00265 * 4 3 2 15 15 C 1.39673 * 119.99644 * 274.99881 * 14 4 3 16 16 C 1.38918 * 120.07035 * 179.97438 * 15 14 4 17 17 C 1.38103 * 119.92232 * 180.27899 * 16 15 14 18 18 C 1.38289 * 120.07411 * 359.50929 * 17 16 15 19 19 C 1.38281 * 120.14983 * 0.47107 * 18 17 16 20 20 C 1.38102 * 120.07722 * 359.78374 * 19 18 17 21 21 H 1.08997 * 109.46860 * 60.00315 * 1 2 3 22 22 H 1.09007 * 109.46600 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47171 * 299.99827 * 1 2 3 24 24 H 1.09000 * 109.47321 * 60.00202 * 3 2 1 25 25 H 1.08997 * 109.47417 * 299.99506 * 3 2 1 26 26 H 0.97002 * 119.99194 * 180.02562 * 9 8 6 27 27 H 0.97003 * 119.99776 * 95.00082 * 14 4 3 28 28 H 1.08002 * 120.03585 * 359.97438 * 16 15 14 29 29 H 1.07998 * 119.96426 * 179.72368 * 17 16 15 30 30 H 1.07993 * 119.92212 * 180.21091 * 18 17 16 31 31 H 1.07998 * 119.96120 * 179.76664 * 19 18 17 32 32 H 1.08001 * 120.04035 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.9785 2.1766 -0.0888 6 6 3.9724 0.3326 -1.1629 7 1 4.5229 -0.5798 -0.9873 8 6 3.6693 0.7176 -2.4517 9 7 2.9993 1.8290 -2.6655 10 14 4.2103 -0.3391 -3.8939 11 1 3.6062 -1.6901 -3.7717 12 1 3.7637 0.2894 -5.1630 13 1 5.6906 -0.4568 -3.8935 14 7 3.9757 0.5645 1.2528 15 6 4.1712 1.3507 2.3905 16 6 4.5882 0.7640 3.5787 17 6 4.7751 1.5435 4.7034 18 6 4.5574 2.9079 4.6450 19 6 4.1427 3.4951 3.4637 20 6 3.9489 2.7208 2.3367 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.6885 1.8464 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 2.7858 2.0997 -3.5722 27 1 4.1314 -0.3922 1.2916 28 1 4.7612 -0.3011 3.6242 29 1 5.0949 1.0874 5.6287 30 1 4.7075 3.5155 5.5250 31 1 3.9700 4.5603 3.4225 32 1 3.6246 3.1800 1.4145 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261040178.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:47 Heat of formation + Delta-G solvation = -19.779803 kcal Electronic energy + Delta-G solvation = -14946.474886 eV Core-core repulsion = 12485.982398 eV Total energy + Delta-G solvation = -2460.492488 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.76590 -36.89602 -34.76256 -32.64492 -30.36828 -29.43633 -27.08179 -25.75385 -24.55081 -22.16484 -21.52660 -19.84889 -17.30358 -16.20601 -15.40868 -15.23263 -15.02049 -14.39118 -14.31695 -13.79482 -13.41760 -12.99127 -12.79754 -12.52080 -11.88285 -11.44706 -11.22391 -11.07904 -10.84029 -10.75735 -10.48269 -10.37408 -10.05430 -9.50720 -9.04204 -8.65601 -8.38680 -8.34184 -6.51300 -6.15107 -4.19440 2.01757 2.28254 3.28034 3.31574 3.34962 4.28580 4.52175 4.59633 4.98376 5.19777 5.46368 5.49960 5.75388 5.95888 6.01886 6.06342 6.19368 6.23936 6.36846 6.49073 6.57993 6.86555 6.96705 7.01424 7.10640 7.19849 7.29481 7.54176 7.74987 7.98676 8.25981 8.44019 8.73421 8.91458 9.45953 10.91825 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031457 B = 0.008224 C = 0.007490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.891639 B = 3404.002790 C = 3737.553825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.370 6.370 3 C 0.055 3.945 4 C 0.275 3.725 5 H 0.055 0.945 6 C -0.511 4.511 7 H 0.062 0.938 8 C 0.067 3.933 9 N -0.896 5.896 10 Si 0.904 3.096 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.277 1.277 14 N -0.719 5.719 15 C 0.237 3.763 16 C -0.219 4.219 17 C -0.073 4.073 18 C -0.210 4.210 19 C -0.072 4.072 20 C -0.208 4.208 21 H 0.031 0.969 22 H 0.068 0.932 23 H 0.022 0.978 24 H 0.006 0.994 25 H 0.082 0.918 26 H 0.264 0.736 27 H 0.393 0.607 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.817 0.375 8.116 8.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.288 6.288 3 C -0.023 4.023 4 C 0.171 3.829 5 H 0.072 0.928 6 C -0.549 4.549 7 H 0.080 0.920 8 C -0.135 4.135 9 N -0.534 5.534 10 Si 0.732 3.268 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.202 1.202 14 N -0.341 5.341 15 C 0.127 3.873 16 C -0.242 4.242 17 C -0.092 4.092 18 C -0.230 4.230 19 C -0.090 4.090 20 C -0.231 4.231 21 H 0.049 0.951 22 H 0.087 0.913 23 H 0.041 0.959 24 H 0.024 0.976 25 H 0.100 0.900 26 H 0.074 0.926 27 H 0.227 0.773 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.129 0.871 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.848 0.403 7.713 7.770 hybrid contribution -0.057 -0.618 -0.824 1.031 sum -0.905 -0.215 6.889 6.952 Atomic orbital electron populations 1.22528 0.84407 1.00755 0.98556 1.87935 1.16464 1.29340 1.95066 1.23194 0.97084 0.83470 0.98542 1.18786 0.88393 0.95276 0.80402 0.92769 1.20985 1.35665 1.08274 0.89989 0.92031 1.24815 0.94674 0.95171 0.98834 1.69825 1.39525 1.22557 1.21526 0.86460 0.78899 0.80467 0.81017 1.20126 1.21241 1.20240 1.45424 1.70904 1.09118 1.08604 1.18084 0.90716 0.91131 0.87321 1.20519 1.11407 0.99415 0.92857 1.20702 0.97784 0.93783 0.96930 1.20642 1.09484 0.94941 0.97980 1.20797 0.96938 0.98694 0.92619 1.20772 1.10215 0.92553 0.99574 0.95081 0.91297 0.95901 0.97606 0.89979 0.92581 0.77342 0.87057 0.87286 0.87569 0.87115 0.85990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 11.01 101.05 1.11 1.77 16 2 O -0.37 -8.70 10.13 -35.23 -0.36 -9.06 16 3 C 0.05 1.31 5.39 37.16 0.20 1.51 16 4 C 0.27 6.70 2.05 -69.08 -0.14 6.55 16 5 H 0.05 1.42 6.48 -51.93 -0.34 1.08 16 6 C -0.51 -13.57 8.25 -34.44 -0.28 -13.86 16 7 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 8 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 9 N -0.90 -24.49 11.38 55.43 0.63 -23.86 16 10 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 N -0.72 -15.46 5.19 -53.28 -0.28 -15.74 16 15 C 0.24 4.70 6.64 -83.78 -0.56 4.15 16 16 C -0.22 -3.81 9.90 -39.38 -0.39 -4.20 16 17 C -0.07 -1.14 10.04 -39.61 -0.40 -1.54 16 18 C -0.21 -3.24 10.04 -39.55 -0.40 -3.64 16 19 C -0.07 -1.19 10.04 -39.62 -0.40 -1.59 16 20 C -0.21 -4.01 8.85 -39.38 -0.35 -4.36 16 21 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16 23 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.01 0.13 7.81 -51.93 -0.41 -0.27 16 25 H 0.08 2.12 6.22 -51.93 -0.32 1.80 16 26 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.39 8.14 8.55 -40.82 -0.35 7.79 16 28 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 29 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 30 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.12 2.47 6.21 -52.49 -0.33 2.14 16 LS Contribution 273.04 15.07 4.11 4.11 Total: -1.00 -27.83 273.04 -6.84 -34.67 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -4.24 Total: 7.37 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -1.69 Total: -13.50 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.35 Total: -39.60 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.36 Total: -9.06 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.83 -6.84 -34.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040178.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.894 kcal (2) G-P(sol) polarization free energy of solvation -27.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds