Wall clock time and date at job start Mon Mar 30 2020 02:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.42898 * 113.99307 * 2 1 4 4 C 1.52999 * 109.46739 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47774 * 175.00392 * 4 3 2 6 6 C 1.50698 * 109.47226 * 55.00178 * 4 3 2 7 7 H 1.08001 * 120.00198 * 239.99890 * 6 4 3 8 8 C 1.37879 * 120.00266 * 60.00152 * 6 4 3 9 9 N 1.31517 * 119.99357 * 0.02562 * 8 6 4 10 10 Si 1.86798 * 120.00310 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47104 * 59.99749 * 10 8 6 12 12 H 1.48498 * 109.47090 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47145 * 299.99655 * 10 8 6 14 14 N 1.46507 * 109.47244 * 295.00265 * 4 3 2 15 15 C 1.39673 * 119.99644 * 274.99881 * 14 4 3 16 16 C 1.38918 * 120.07035 * 179.97438 * 15 14 4 17 17 C 1.38103 * 119.92232 * 180.27899 * 16 15 14 18 18 C 1.38289 * 120.07411 * 359.50929 * 17 16 15 19 19 C 1.38281 * 120.14983 * 0.47107 * 18 17 16 20 20 C 1.38102 * 120.07722 * 359.78374 * 19 18 17 21 21 H 1.08997 * 109.46860 * 60.00315 * 1 2 3 22 22 H 1.09007 * 109.46600 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47171 * 299.99827 * 1 2 3 24 24 H 1.09000 * 109.47321 * 60.00202 * 3 2 1 25 25 H 1.08997 * 109.47417 * 299.99506 * 3 2 1 26 26 H 0.97002 * 119.99194 * 180.02562 * 9 8 6 27 27 H 0.97003 * 119.99776 * 95.00082 * 14 4 3 28 28 H 1.08002 * 120.03585 * 359.97438 * 16 15 14 29 29 H 1.07998 * 119.96426 * 179.72368 * 17 16 15 30 30 H 1.07993 * 119.92212 * 180.21091 * 18 17 16 31 31 H 1.07998 * 119.96120 * 179.76664 * 19 18 17 32 32 H 1.08001 * 120.04035 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.9785 2.1766 -0.0888 6 6 3.9724 0.3326 -1.1629 7 1 4.5229 -0.5798 -0.9873 8 6 3.6693 0.7176 -2.4517 9 7 2.9993 1.8290 -2.6655 10 14 4.2103 -0.3391 -3.8939 11 1 3.6062 -1.6901 -3.7717 12 1 3.7637 0.2894 -5.1630 13 1 5.6906 -0.4568 -3.8935 14 7 3.9757 0.5645 1.2528 15 6 4.1712 1.3507 2.3905 16 6 4.5882 0.7640 3.5787 17 6 4.7751 1.5435 4.7034 18 6 4.5574 2.9079 4.6450 19 6 4.1427 3.4951 3.4637 20 6 3.9489 2.7208 2.3367 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.6885 1.8464 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 2.7858 2.0997 -3.5722 27 1 4.1314 -0.3922 1.2916 28 1 4.7612 -0.3011 3.6242 29 1 5.0949 1.0874 5.6287 30 1 4.7075 3.5155 5.5250 31 1 3.9700 4.5603 3.4225 32 1 3.6246 3.1800 1.4145 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261040178.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:47 Heat of formation + Delta-G solvation = -36.777070 kcal Electronic energy + Delta-G solvation = -14947.211943 eV Core-core repulsion = 12485.982398 eV Total energy + Delta-G solvation = -2461.229545 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.21398 -38.61795 -36.42319 -34.53109 -31.77137 -31.05942 -28.64369 -27.52773 -26.38099 -23.64807 -23.01709 -21.50540 -19.03694 -17.84383 -17.20212 -16.83109 -16.64856 -16.13677 -15.99064 -15.39935 -14.82466 -14.58989 -14.16524 -14.00336 -13.67781 -13.18661 -12.89755 -12.82705 -12.64367 -12.30299 -12.16705 -11.95331 -11.62899 -11.26237 -10.81937 -10.53739 -10.24582 -9.69352 -8.20045 -8.02590 -6.28431 0.67709 0.92685 1.41953 1.43935 1.50795 2.38717 2.94693 3.12960 3.17551 3.28956 4.17169 4.27121 4.43816 4.49629 4.55591 4.61415 4.76295 4.77952 4.84117 4.94240 4.97611 5.15562 5.29574 5.36349 5.61335 5.68056 5.76232 5.86894 6.02376 6.25074 6.53090 6.64935 6.86649 7.23155 7.41102 8.88264 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031457 B = 0.008224 C = 0.007490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.891639 B = 3404.002790 C = 3737.553825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.393 6.393 3 C 0.071 3.929 4 C 0.283 3.717 5 H 0.027 0.973 6 C -0.527 4.527 7 H 0.057 0.943 8 C 0.022 3.978 9 N -0.918 5.918 10 Si 0.962 3.038 11 H -0.274 1.274 12 H -0.282 1.282 13 H -0.272 1.272 14 N -0.727 5.727 15 C 0.208 3.792 16 C -0.222 4.222 17 C -0.070 4.070 18 C -0.200 4.200 19 C -0.075 4.075 20 C -0.232 4.232 21 H 0.028 0.972 22 H 0.095 0.905 23 H 0.039 0.961 24 H 0.010 0.990 25 H 0.057 0.943 26 H 0.265 0.735 27 H 0.394 0.606 28 H 0.125 0.875 29 H 0.146 0.854 30 H 0.142 0.858 31 H 0.134 0.866 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.536 -0.051 9.840 9.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.312 6.312 3 C -0.007 4.007 4 C 0.179 3.821 5 H 0.044 0.956 6 C -0.565 4.565 7 H 0.075 0.925 8 C -0.178 4.178 9 N -0.557 5.557 10 Si 0.788 3.212 11 H -0.200 1.200 12 H -0.207 1.207 13 H -0.197 1.197 14 N -0.351 5.351 15 C 0.101 3.899 16 C -0.245 4.245 17 C -0.089 4.089 18 C -0.220 4.220 19 C -0.094 4.094 20 C -0.256 4.256 21 H 0.047 0.953 22 H 0.114 0.886 23 H 0.058 0.942 24 H 0.028 0.972 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.227 0.773 28 H 0.143 0.857 29 H 0.164 0.836 30 H 0.160 0.840 31 H 0.152 0.848 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.563 -0.012 9.478 9.495 hybrid contribution -0.153 -0.432 -1.207 1.291 sum -0.716 -0.443 8.271 8.314 Atomic orbital electron populations 1.22766 0.81981 1.02784 0.99229 1.87876 1.19200 1.28927 1.95175 1.22866 0.96879 0.83586 0.97349 1.18403 0.88646 0.93718 0.81375 0.95567 1.21266 1.35713 1.08364 0.91143 0.92502 1.25561 0.94790 0.96266 1.01140 1.69948 1.40224 1.23686 1.21889 0.85542 0.78640 0.78842 0.78179 1.19967 1.20722 1.19683 1.45119 1.72530 1.09101 1.08372 1.18367 0.92473 0.91357 0.87689 1.20784 1.10734 1.00469 0.92485 1.21161 0.96295 0.93876 0.97539 1.21111 1.07054 0.95385 0.98421 1.21110 0.96307 0.99797 0.92184 1.20805 1.11865 0.92956 0.99940 0.95307 0.88622 0.94248 0.97217 0.92515 0.92607 0.77270 0.85746 0.83596 0.84035 0.84825 0.88333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.07 11.01 113.37 1.25 2.32 16 2 O -0.39 -18.66 10.13 -148.98 -1.51 -20.17 16 3 C 0.07 3.52 5.39 71.98 0.39 3.90 16 4 C 0.28 14.37 2.05 44.24 0.09 14.46 16 5 H 0.03 1.48 6.48 -2.39 -0.02 1.46 16 6 C -0.53 -28.73 8.25 25.60 0.21 -28.52 16 7 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 8 C 0.02 1.19 5.30 84.65 0.45 1.64 16 9 N -0.92 -51.52 11.38 21.45 0.24 -51.27 16 10 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 13 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 14 N -0.73 -32.16 5.19 -322.49 -1.67 -33.83 16 15 C 0.21 8.29 6.64 38.22 0.25 8.54 16 16 C -0.22 -7.35 9.90 22.40 0.22 -7.13 16 17 C -0.07 -1.93 10.04 22.25 0.22 -1.71 16 18 C -0.20 -5.43 10.04 22.29 0.22 -5.21 16 19 C -0.08 -2.37 10.04 22.25 0.22 -2.15 16 20 C -0.23 -9.10 8.85 22.40 0.20 -8.90 16 21 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.10 2.97 8.14 -2.38 -0.02 2.95 16 23 H 0.04 1.30 8.14 -2.39 -0.02 1.29 16 24 H 0.01 0.46 7.81 -2.39 -0.02 0.44 16 25 H 0.06 3.07 6.22 -2.39 -0.01 3.05 16 26 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 27 H 0.39 16.71 8.55 -92.71 -0.79 15.92 16 28 H 0.12 3.71 8.06 -2.91 -0.02 3.69 16 29 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 30 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.13 3.49 8.06 -2.91 -0.02 3.46 16 32 H 0.10 4.24 6.21 -2.91 -0.02 4.22 16 Total: -1.00 -60.37 273.04 3.14 -57.24 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 0.32 Total: 25.30 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: 3.73 Total: -22.74 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -1.43 Total: -85.10 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -1.51 Total: -20.17 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -60.37 3.14 -57.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040178.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.461 kcal (2) G-P(sol) polarization free energy of solvation -60.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds