Wall clock time and date at job start Mon Mar 30 2020 02:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46903 * 109.46786 * 2 1 4 4 C 1.46896 * 110.99743 * 184.19576 * 3 2 1 5 5 H 1.09000 * 109.47557 * 33.44214 * 4 3 2 6 6 C 1.50697 * 109.47117 * 153.44472 * 4 3 2 7 7 H 1.07998 * 120.00195 * 119.99972 * 6 4 3 8 8 C 1.37881 * 120.00037 * 299.99781 * 6 4 3 9 9 N 1.31521 * 119.99847 * 0.02562 * 8 6 4 10 10 Si 1.86802 * 120.00158 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46574 * 60.00496 * 10 8 6 12 12 H 1.48499 * 109.47103 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47357 * 300.00497 * 10 8 6 14 14 C 1.50703 * 109.47364 * 273.44600 * 4 3 2 15 15 C 1.38162 * 120.02499 * 334.39018 * 14 4 3 16 16 C 1.38246 * 120.05286 * 179.97438 * 15 14 4 17 17 C 1.38283 * 120.11550 * 0.02562 * 16 15 14 18 18 C 1.38126 * 120.05193 * 0.02562 * 17 16 15 19 19 C 1.38714 * 120.02809 * 154.37209 * 14 4 3 20 20 O 1.35895 * 120.05806 * 0.04508 * 19 14 4 21 21 H 1.08995 * 109.47244 * 299.99924 * 1 2 3 22 22 H 1.09001 * 109.46933 * 60.00182 * 1 2 3 23 23 H 1.09001 * 109.47006 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47244 * 240.00076 * 2 1 3 25 25 H 1.09001 * 109.46933 * 119.99818 * 2 1 3 26 26 H 1.00903 * 111.00232 * 308.15220 * 3 2 1 27 27 H 0.96992 * 119.99502 * 179.97438 * 9 8 6 28 28 H 1.08002 * 119.97350 * 359.97438 * 15 14 4 29 29 H 1.08011 * 119.94065 * 180.02562 * 16 15 14 30 30 H 1.08005 * 119.97555 * 179.74138 * 17 16 15 31 31 H 1.08005 * 120.02299 * 179.97438 * 18 17 16 32 32 H 0.96698 * 114.00161 * 89.99624 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4846 1.4255 -0.1003 5 1 3.8301 0.5924 -0.7124 6 6 3.9090 2.7248 -0.7348 7 1 4.5498 3.4058 -0.1944 8 6 3.4792 3.0444 -2.0053 9 7 2.6984 2.2154 -2.6633 10 14 4.0046 4.6554 -2.7916 11 1 5.4856 4.6967 -2.8929 12 1 3.4120 4.7600 -4.1492 13 1 3.5336 5.7901 -1.9575 14 6 4.0857 1.3194 1.2776 15 6 3.3614 1.7274 2.3811 16 6 3.9120 1.6298 3.6454 17 6 5.1887 1.1244 3.8090 18 6 5.9173 0.7162 2.7088 19 6 5.3664 0.8117 1.4390 20 8 6.0811 0.4102 0.3551 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.5915 1.9200 -0.7408 27 1 2.3958 2.4404 -3.5570 28 1 2.3642 2.1228 2.2559 29 1 3.3439 1.9489 4.5069 30 1 5.6183 1.0531 4.7974 31 1 6.9146 0.3219 2.8372 32 1 6.6210 1.1081 -0.0406 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261045639.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:57 Heat of formation + Delta-G solvation = -26.051354 kcal Electronic energy + Delta-G solvation = -15183.838986 eV Core-core repulsion = 12723.074543 eV Total energy + Delta-G solvation = -2460.764443 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.08559 -35.92269 -35.52413 -32.55751 -31.05640 -29.18959 -28.16673 -25.88985 -22.95180 -21.72395 -21.11101 -19.76405 -17.54233 -16.47269 -15.55157 -15.11607 -14.72969 -14.20916 -14.03226 -13.38626 -13.22009 -13.01690 -12.55071 -11.80916 -11.56884 -11.34474 -11.28244 -11.01977 -10.93085 -10.83422 -10.62703 -10.30679 -10.00769 -9.39994 -9.30916 -8.74524 -8.05705 -7.68624 -6.98515 -6.17867 -4.25936 1.99829 2.15102 3.24152 3.29626 3.32363 4.28537 4.45368 5.05138 5.08437 5.53201 5.59615 5.78036 5.83490 5.94333 6.10083 6.14591 6.35113 6.47047 6.63574 6.65657 6.78210 6.86147 6.92282 7.04998 7.22767 7.32312 7.49789 7.64645 7.78578 8.02578 8.46509 8.63496 8.82676 9.11448 9.41178 10.87949 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.021550 B = 0.011658 C = 0.008933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.977678 B = 2401.143766 C = 3133.822160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.057 3.943 3 N -0.683 5.683 4 C 0.245 3.755 5 H 0.024 0.976 6 C -0.510 4.510 7 H 0.058 0.942 8 C 0.066 3.934 9 N -0.894 5.894 10 Si 0.900 3.100 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.275 1.275 14 C -0.056 4.056 15 C -0.085 4.085 16 C -0.143 4.143 17 C -0.134 4.134 18 C -0.158 4.158 19 C 0.096 3.904 20 O -0.497 6.497 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.043 0.957 24 H 0.020 0.980 25 H 0.047 0.953 26 H 0.361 0.639 27 H 0.266 0.734 28 H 0.134 0.866 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.339 -1.424 6.953 7.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 N -0.318 5.318 4 C 0.137 3.863 5 H 0.041 0.959 6 C -0.548 4.548 7 H 0.077 0.923 8 C -0.136 4.136 9 N -0.533 5.533 10 Si 0.728 3.272 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.201 1.201 14 C -0.058 4.058 15 C -0.103 4.103 16 C -0.162 4.162 17 C -0.152 4.152 18 C -0.177 4.177 19 C 0.051 3.949 20 O -0.306 6.306 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.038 0.962 25 H 0.066 0.934 26 H 0.184 0.816 27 H 0.076 0.924 28 H 0.152 0.848 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 0.958 -1.937 7.550 7.853 hybrid contribution 0.669 1.012 -1.514 1.940 sum 1.627 -0.925 6.036 6.319 Atomic orbital electron populations 1.21737 0.96866 1.00012 1.01547 1.21765 0.93820 0.93105 0.98632 1.60859 1.08213 1.09343 1.53422 1.17955 0.84921 0.97036 0.86361 0.95865 1.21084 1.30639 1.03710 0.99401 0.92335 1.25036 0.94741 0.97140 0.96728 1.69806 1.34465 1.35970 1.13074 0.86522 0.78876 0.83571 0.78262 1.20210 1.21243 1.20070 1.20940 0.93215 0.93264 0.98347 1.21075 1.00509 0.98027 0.90683 1.21127 0.95733 1.01884 0.97407 1.20746 0.95270 1.01682 0.97504 1.21229 1.00149 1.03691 0.92623 1.18415 0.91664 0.98724 0.86094 1.84698 1.62436 1.39480 1.44028 0.92853 0.93101 0.93761 0.96200 0.93444 0.81628 0.92403 0.84798 0.87089 0.87108 0.86792 0.75835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 10.13 37.16 0.38 -2.17 16 2 C 0.06 1.21 6.25 -3.82 -0.02 1.19 16 3 N -0.68 -16.10 5.04 -109.19 -0.55 -16.65 16 4 C 0.25 6.12 1.85 -70.02 -0.13 5.99 16 5 H 0.02 0.67 7.24 -51.93 -0.38 0.29 16 6 C -0.51 -13.43 8.67 -34.44 -0.30 -13.73 16 7 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 8 C 0.07 1.74 5.11 -17.82 -0.09 1.65 16 9 N -0.89 -24.27 11.79 55.43 0.65 -23.62 16 10 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 12 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 C -0.06 -1.26 4.88 -104.47 -0.51 -1.77 16 15 C -0.08 -1.72 9.32 -39.61 -0.37 -2.09 16 16 C -0.14 -2.47 10.04 -39.56 -0.40 -2.87 16 17 C -0.13 -2.19 10.04 -39.61 -0.40 -2.59 16 18 C -0.16 -2.81 9.99 -39.43 -0.39 -3.21 16 19 C 0.10 1.98 6.68 -39.22 -0.26 1.72 16 20 O -0.50 -10.07 12.63 -19.41 -0.25 -10.31 16 21 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.02 0.46 7.95 -51.93 -0.41 0.05 16 25 H 0.05 0.99 8.12 -51.93 -0.42 0.57 16 26 H 0.36 9.22 6.38 -39.29 -0.25 8.97 16 27 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.13 2.75 7.28 -52.49 -0.38 2.37 16 29 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 30 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 31 H 0.11 1.76 8.06 -52.48 -0.42 1.33 16 32 H 0.39 6.49 9.06 45.56 0.41 6.90 16 LS Contribution 273.97 15.07 4.13 4.13 Total: -1.00 -27.96 273.97 -7.04 -35.00 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -3.51 Total: 13.85 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -2.50 Total: -17.87 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.10 Total: -40.27 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -0.25 Total: -10.31 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.96 -7.04 -35.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261045639.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.947 kcal (2) G-P(sol) polarization free energy of solvation -27.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds