Wall clock time and date at job start Mon Mar 30 2020 02:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46903 * 109.46786 * 2 1 4 4 C 1.46896 * 110.99743 * 184.19576 * 3 2 1 5 5 H 1.09000 * 109.47557 * 33.44214 * 4 3 2 6 6 C 1.50697 * 109.47117 * 153.44472 * 4 3 2 7 7 H 1.07998 * 120.00195 * 119.99972 * 6 4 3 8 8 C 1.37881 * 120.00037 * 299.99781 * 6 4 3 9 9 N 1.31521 * 119.99847 * 0.02562 * 8 6 4 10 10 Si 1.86802 * 120.00158 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46574 * 60.00496 * 10 8 6 12 12 H 1.48499 * 109.47103 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47357 * 300.00497 * 10 8 6 14 14 C 1.50703 * 109.47364 * 273.44600 * 4 3 2 15 15 C 1.38162 * 120.02499 * 334.39018 * 14 4 3 16 16 C 1.38246 * 120.05286 * 179.97438 * 15 14 4 17 17 C 1.38283 * 120.11550 * 0.02562 * 16 15 14 18 18 C 1.38126 * 120.05193 * 0.02562 * 17 16 15 19 19 C 1.38714 * 120.02809 * 154.37209 * 14 4 3 20 20 O 1.35895 * 120.05806 * 0.04508 * 19 14 4 21 21 H 1.08995 * 109.47244 * 299.99924 * 1 2 3 22 22 H 1.09001 * 109.46933 * 60.00182 * 1 2 3 23 23 H 1.09001 * 109.47006 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47244 * 240.00076 * 2 1 3 25 25 H 1.09001 * 109.46933 * 119.99818 * 2 1 3 26 26 H 1.00903 * 111.00232 * 308.15220 * 3 2 1 27 27 H 0.96992 * 119.99502 * 179.97438 * 9 8 6 28 28 H 1.08002 * 119.97350 * 359.97438 * 15 14 4 29 29 H 1.08011 * 119.94065 * 180.02562 * 16 15 14 30 30 H 1.08005 * 119.97555 * 179.74138 * 17 16 15 31 31 H 1.08005 * 120.02299 * 179.97438 * 18 17 16 32 32 H 0.96698 * 114.00161 * 89.99624 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4846 1.4255 -0.1003 5 1 3.8301 0.5924 -0.7124 6 6 3.9090 2.7248 -0.7348 7 1 4.5498 3.4058 -0.1944 8 6 3.4792 3.0444 -2.0053 9 7 2.6984 2.2154 -2.6633 10 14 4.0046 4.6554 -2.7916 11 1 5.4856 4.6967 -2.8929 12 1 3.4120 4.7600 -4.1492 13 1 3.5336 5.7901 -1.9575 14 6 4.0857 1.3194 1.2776 15 6 3.3614 1.7274 2.3811 16 6 3.9120 1.6298 3.6454 17 6 5.1887 1.1244 3.8090 18 6 5.9173 0.7162 2.7088 19 6 5.3664 0.8117 1.4390 20 8 6.0811 0.4102 0.3551 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.5915 1.9200 -0.7408 27 1 2.3958 2.4404 -3.5570 28 1 2.3642 2.1228 2.2559 29 1 3.3439 1.9489 4.5069 30 1 5.6183 1.0531 4.7974 31 1 6.9146 0.3219 2.8372 32 1 6.6210 1.1081 -0.0406 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261045639.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:57 Heat of formation + Delta-G solvation = -45.043530 kcal Electronic energy + Delta-G solvation = -15184.662548 eV Core-core repulsion = 12723.074543 eV Total energy + Delta-G solvation = -2461.588005 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.61729 -37.61083 -37.14735 -34.48023 -32.72258 -30.68090 -29.77038 -27.79091 -24.68634 -23.23597 -22.76771 -21.44447 -19.11557 -18.44138 -17.19078 -16.70642 -16.44870 -15.86946 -15.64694 -15.06043 -14.93787 -14.58491 -14.13764 -13.62301 -13.13606 -12.95507 -12.89055 -12.70202 -12.59525 -12.45006 -12.30436 -12.00451 -11.72236 -11.30183 -10.94285 -10.75780 -9.53197 -9.24275 -8.91241 -8.18760 -6.35475 0.53439 0.68447 1.41790 1.43154 1.51103 2.38927 2.95777 3.04569 3.62076 3.93892 4.25113 4.30252 4.34126 4.41026 4.55173 4.67938 4.83412 4.87369 5.06890 5.15922 5.17531 5.25165 5.35576 5.38555 5.61283 5.69678 5.79419 5.90398 6.04452 6.21861 6.65484 6.85584 6.98984 7.11817 7.35328 8.85017 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.021550 B = 0.011658 C = 0.008933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.977678 B = 2401.143766 C = 3133.822160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.059 3.941 3 N -0.677 5.677 4 C 0.254 3.746 5 H -0.027 1.027 6 C -0.524 4.524 7 H 0.052 0.948 8 C 0.022 3.978 9 N -0.920 5.920 10 Si 0.964 3.036 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.271 1.271 14 C -0.091 4.091 15 C -0.098 4.098 16 C -0.136 4.136 17 C -0.119 4.119 18 C -0.155 4.155 19 C 0.073 3.927 20 O -0.512 6.512 21 H 0.065 0.935 22 H 0.042 0.958 23 H 0.071 0.929 24 H -0.009 1.009 25 H 0.049 0.951 26 H 0.347 0.653 27 H 0.266 0.734 28 H 0.123 0.877 29 H 0.147 0.853 30 H 0.156 0.844 31 H 0.141 0.859 32 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.725 -0.890 9.092 9.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.071 4.071 3 N -0.310 5.310 4 C 0.145 3.855 5 H -0.009 1.009 6 C -0.563 4.563 7 H 0.071 0.929 8 C -0.178 4.178 9 N -0.559 5.559 10 Si 0.789 3.211 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.196 1.196 14 C -0.093 4.093 15 C -0.117 4.117 16 C -0.153 4.153 17 C -0.137 4.137 18 C -0.174 4.174 19 C 0.028 3.972 20 O -0.323 6.323 21 H 0.084 0.916 22 H 0.061 0.939 23 H 0.090 0.910 24 H 0.009 0.991 25 H 0.068 0.932 26 H 0.168 0.832 27 H 0.076 0.924 28 H 0.141 0.859 29 H 0.165 0.835 30 H 0.173 0.827 31 H 0.158 0.842 32 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.353 -1.408 9.706 9.900 hybrid contribution 0.585 0.791 -2.103 2.322 sum 1.939 -0.616 7.603 7.871 Atomic orbital electron populations 1.21650 0.93682 1.01923 1.01743 1.21798 0.96443 0.91573 0.97293 1.60923 1.07484 1.10371 1.52206 1.17686 0.85541 0.94537 0.87714 1.00944 1.21300 1.30733 1.04278 0.99941 0.92925 1.25775 0.94675 1.00181 0.97129 1.69926 1.35259 1.37503 1.13217 0.85520 0.78621 0.79677 0.77261 1.19616 1.20966 1.19625 1.20815 0.94648 0.96416 0.97394 1.21074 1.00201 0.98741 0.91669 1.21482 0.96340 1.00553 0.96970 1.21257 0.94451 0.99044 0.98958 1.21533 1.01395 1.02893 0.91536 1.18708 0.91477 0.99669 0.87338 1.84659 1.62656 1.40314 1.44685 0.91599 0.93851 0.91004 0.99094 0.93210 0.83246 0.92445 0.85900 0.83548 0.82661 0.84168 0.74760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 10.13 71.98 0.73 -3.88 16 2 C 0.06 2.59 6.25 86.30 0.54 3.13 16 3 N -0.68 -33.14 5.04 -499.36 -2.52 -35.66 16 4 C 0.25 13.27 1.85 43.42 0.08 13.35 16 5 H -0.03 -1.63 7.24 -2.39 -0.02 -1.65 16 6 C -0.52 -28.58 8.67 25.60 0.22 -28.36 16 7 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 8 C 0.02 1.20 5.11 84.65 0.43 1.63 16 9 N -0.92 -51.60 11.79 21.45 0.25 -51.35 16 10 Si 0.96 42.62 29.54 68.60 2.03 44.65 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 13 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 14 C -0.09 -4.16 4.88 -19.77 -0.10 -4.26 16 15 C -0.10 -3.93 9.32 22.25 0.21 -3.72 16 16 C -0.14 -4.23 10.04 22.28 0.22 -4.00 16 17 C -0.12 -3.40 10.04 22.25 0.22 -3.18 16 18 C -0.16 -5.11 9.99 22.37 0.22 -4.88 16 19 C 0.07 3.01 6.68 22.51 0.15 3.16 16 20 O -0.51 -21.37 12.63 -92.37 -1.17 -22.54 16 21 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 22 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 24 H -0.01 -0.45 7.95 -2.39 -0.02 -0.47 16 25 H 0.05 2.13 8.12 -2.39 -0.02 2.11 16 26 H 0.35 18.44 6.38 -89.69 -0.57 17.87 16 27 H 0.27 14.27 8.31 -92.71 -0.77 13.49 16 28 H 0.12 5.06 7.28 -2.91 -0.02 5.04 16 29 H 0.15 3.51 8.06 -2.90 -0.02 3.49 16 30 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 31 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 32 H 0.40 13.87 9.06 -74.06 -0.67 13.19 16 Total: -1.00 -62.43 273.97 1.41 -61.02 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: -0.12 Total: 34.89 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: 2.94 Total: -31.01 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -2.26 Total: -87.01 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -1.17 Total: -22.54 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -62.43 1.41 -61.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261045639.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.973 kcal (2) G-P(sol) polarization free energy of solvation -62.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds