Wall clock time and date at job start Mon Mar 30 2020 03:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34432 * 126.82742 * 85.02403 * 10 9 7 12 12 N 1.30829 * 108.07740 * 179.97438 * 11 10 9 13 13 C 1.33237 * 109.83286 * 0.02562 * 12 11 10 14 14 C 1.50697 * 125.52751 * 180.02562 * 13 12 11 15 15 C 1.54272 * 110.03389 * 57.93048 * 14 13 12 16 16 C 1.54971 * 104.15870 * 217.13641 * 15 14 13 17 17 C 1.54889 * 102.77770 * 37.88668 * 16 15 14 18 18 C 1.53877 * 110.03383 * 300.70972 * 14 13 12 19 19 N 1.30710 * 108.94448 * 359.74828 * 13 12 11 20 20 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.07996 * 125.95556 * 359.97438 * 11 10 9 24 24 H 1.09005 * 110.02051 * 179.32218 * 14 13 12 25 25 H 1.08995 * 110.48409 * 335.78370 * 15 14 13 26 26 H 1.09000 * 110.48890 * 98.42873 * 15 14 13 27 27 H 1.08993 * 110.71883 * 279.57009 * 16 15 14 28 28 H 1.09002 * 110.76071 * 156.22093 * 16 15 14 29 29 H 1.08996 * 110.48349 * 203.40640 * 17 16 15 30 30 H 1.08996 * 110.60000 * 80.81615 * 17 16 15 31 31 H 1.08993 * 110.03589 * 238.56769 * 18 14 13 32 32 H 1.09004 * 110.02603 * 0.02562 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 7 3.9998 -2.5753 0.0106 11 6 4.1849 -3.3682 -1.0591 12 7 4.6309 -4.5231 -0.6360 13 6 4.7425 -4.5057 0.6915 14 6 5.2239 -5.6507 1.5449 15 6 6.6426 -6.0734 1.1108 16 6 6.6406 -7.6160 1.2589 17 6 5.2160 -8.0032 0.7901 18 6 4.3171 -6.8772 1.3416 19 7 4.3724 -3.3325 1.1332 20 1 -0.4849 0.8400 0.0004 21 1 3.8786 -0.6821 -0.8838 22 1 3.8711 -0.6785 0.8962 23 1 3.9979 -3.0988 -2.0881 24 1 5.2263 -5.3583 2.5950 25 1 6.8247 -5.7900 0.0742 26 1 7.3908 -5.6275 1.7662 27 1 6.7968 -7.9038 2.2984 28 1 7.3952 -8.0670 0.6145 29 1 4.9242 -8.9652 1.2114 30 1 5.1654 -8.0333 -0.2983 31 1 3.8802 -7.1804 2.2929 32 1 3.5292 -6.6443 0.6253 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261103527.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:43 Heat of formation + Delta-G solvation = 67.020902 kcal Electronic energy + Delta-G solvation = -14609.116907 eV Core-core repulsion = 12184.681131 eV Total energy + Delta-G solvation = -2424.435776 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.35510 -37.78993 -34.06429 -32.19551 -30.81170 -29.14022 -28.54019 -27.14798 -23.17626 -21.60068 -20.75869 -20.48870 -18.89963 -17.21852 -16.31379 -15.65021 -14.97256 -14.69986 -14.36807 -13.85533 -13.17530 -13.03251 -12.72150 -12.50066 -11.75163 -11.31494 -11.25641 -11.05669 -10.98307 -10.94629 -10.74423 -10.56040 -10.41154 -10.33773 -9.82942 -9.25573 -8.98648 -8.86770 -8.53221 -6.34696 -4.39836 2.46002 3.08889 3.15875 3.18210 3.32186 3.53243 4.14550 4.54876 4.77647 4.83107 4.94329 5.07467 5.31631 5.57694 5.65627 5.70098 5.72300 5.78139 5.87356 6.00577 6.03313 6.16509 6.33515 6.38437 6.45249 6.50229 6.62184 7.07589 7.17296 7.19442 7.63319 8.18597 8.67471 8.86143 9.19385 10.77574 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.062729 B = 0.005888 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.257482 B = 4754.312800 C = 4898.244839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.081 3.919 3 Si 0.875 3.125 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.548 4.548 8 H 0.080 0.920 9 C 0.227 3.773 10 N -0.337 5.337 11 C 0.246 3.754 12 N -0.557 5.557 13 C 0.203 3.797 14 C 0.008 3.992 15 C -0.112 4.112 16 C -0.122 4.122 17 C -0.119 4.119 18 C -0.111 4.111 19 N -0.320 5.320 20 H 0.270 0.730 21 H 0.049 0.951 22 H 0.054 0.946 23 H 0.210 0.790 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.291 -9.656 0.386 14.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.124 4.124 3 Si 0.701 3.299 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.587 4.587 8 H 0.098 0.902 9 C 0.107 3.893 10 N -0.124 5.124 11 C -0.051 4.051 12 N -0.286 5.286 13 C -0.079 4.079 14 C -0.013 4.013 15 C -0.150 4.150 16 C -0.160 4.160 17 C -0.157 4.157 18 C -0.150 4.150 19 N -0.150 5.150 20 H 0.080 0.920 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.227 0.773 24 H 0.105 0.895 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.135 -9.445 0.924 14.630 hybrid contribution -0.044 1.341 -0.279 1.370 sum 11.091 -8.104 0.644 13.751 Atomic orbital electron populations 1.69867 1.06228 1.27611 1.48280 1.24809 0.94851 0.98940 0.93793 0.86859 0.80449 0.83508 0.79063 1.19520 1.20394 1.18792 1.21133 0.87771 0.95667 1.54095 0.90153 1.20088 0.96690 0.73465 0.99106 1.50619 1.44489 1.13961 1.03375 1.25748 0.96630 0.86746 0.95943 1.70202 1.25240 1.22194 1.10998 1.23897 0.99973 0.93798 0.90222 1.19984 0.94915 0.89607 0.96820 1.22400 0.94921 0.95352 1.02368 1.22485 0.97108 0.95563 1.00816 1.22316 0.94714 0.97577 1.01091 1.22115 0.98172 0.93523 1.01180 1.77926 1.22090 1.05139 1.09829 0.91951 0.93368 0.92849 0.77332 0.89477 0.90472 0.91831 0.91698 0.91692 0.92059 0.91286 0.91735 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.90 13.96 55.43 0.77 -25.12 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 19.72 27.47 -169.99 -4.67 15.05 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 6 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 7 C -0.55 -15.05 9.94 -34.44 -0.34 -15.39 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 9 C 0.23 5.26 5.32 -5.20 -0.03 5.24 16 10 N -0.34 -7.54 3.62 -63.82 -0.23 -7.77 16 11 C 0.25 4.83 12.66 -90.65 -1.15 3.68 16 12 N -0.56 -10.95 10.94 -11.98 -0.13 -11.08 16 13 C 0.20 4.00 6.37 -156.86 -1.00 3.00 16 14 C 0.01 0.12 3.44 -90.65 -0.31 -0.19 16 15 C -0.11 -1.44 6.36 -25.02 -0.16 -1.60 16 16 C -0.12 -1.28 6.91 -24.69 -0.17 -1.45 16 17 C -0.12 -1.36 6.83 -25.07 -0.17 -1.53 16 18 C -0.11 -1.54 6.45 -25.61 -0.17 -1.70 16 19 N -0.32 -7.23 12.70 32.42 0.41 -6.82 16 20 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 21 H 0.05 1.00 7.58 -51.93 -0.39 0.61 16 22 H 0.05 1.26 7.19 -51.93 -0.37 0.89 16 23 H 0.21 3.26 8.06 -52.49 -0.42 2.83 16 24 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 25 H 0.08 1.11 7.66 -51.93 -0.40 0.71 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.15 7.65 -51.93 -0.40 0.75 16 LS Contribution 270.68 15.07 4.08 4.08 Total: -1.00 -30.87 270.68 -7.89 -38.77 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.53 Total: 0.72 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -3.59 Total: -7.83 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: 0.82 Total: -50.79 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.67 Total: 15.05 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.87 -7.89 -38.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261103527.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.788 kcal (2) G-P(sol) polarization free energy of solvation -30.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds