Wall clock time and date at job start Mon Mar 30 2020 03:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99987 * 2 1 4 4 H 1.48501 * 109.47127 * 264.78166 * 3 2 1 5 5 H 1.48500 * 109.47296 * 24.78453 * 3 2 1 6 6 H 1.48502 * 109.47232 * 144.78268 * 3 2 1 7 7 C 1.37874 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00023 * 5.76918 * 7 2 1 9 9 C 1.50701 * 120.00134 * 185.77053 * 7 2 1 10 10 H 1.08996 * 109.53236 * 335.26440 * 9 7 2 11 11 C 1.53122 * 109.50196 * 95.36557 * 9 7 2 12 12 C 1.53114 * 109.15843 * 177.59687 * 11 9 7 13 13 C 1.53042 * 109.28025 * 302.34219 * 12 11 9 14 14 N 1.46848 * 109.51945 * 59.18004 * 13 12 11 15 15 C 1.40795 * 110.99658 * 174.16135 * 14 13 12 16 16 C 1.40217 * 126.06910 * 124.18988 * 15 14 13 17 17 N 1.30858 * 108.36791 * 180.02562 * 16 15 14 18 18 N 1.40080 * 108.36167 * 359.97438 * 17 16 15 19 19 H 0.96998 * 126.07149 * 179.97438 * 18 17 16 20 20 C 1.35704 * 126.06764 * 304.20897 * 15 14 13 21 21 C 1.46841 * 111.20139 * 298.25865 * 14 13 12 22 22 H 0.97001 * 120.00029 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.52379 * 297.50286 * 11 9 7 24 24 H 1.08998 * 109.52175 * 57.68703 * 11 9 7 25 25 H 1.09000 * 109.50745 * 62.28670 * 12 11 9 26 26 H 1.09007 * 109.50211 * 182.36658 * 12 11 9 27 27 H 1.08999 * 109.46398 * 299.16531 * 13 12 11 28 28 H 1.08995 * 109.46434 * 179.19436 * 13 12 11 29 29 H 1.08006 * 125.81242 * 359.97438 * 16 15 14 30 30 H 1.08007 * 126.22412 * 0.24461 * 20 15 14 31 31 H 1.09003 * 109.46535 * 181.76029 * 21 14 13 32 32 H 1.09005 * 109.46344 * 301.73116 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6069 1.9827 -1.3943 5 1 1.3958 2.6820 0.5869 6 1 3.4872 1.4745 0.8074 7 6 2.0045 -1.1940 -0.0005 8 1 1.4686 -2.1269 -0.0950 9 6 3.5058 -1.1974 0.1307 10 1 3.9042 -0.2447 -0.2179 11 6 3.8902 -1.4063 1.5981 12 6 5.4157 -1.4685 1.7140 13 6 5.9443 -2.5974 0.8261 14 7 5.5509 -2.3510 -0.5671 15 6 6.1323 -3.2990 -1.4306 16 6 5.4447 -4.1342 -2.3227 17 7 6.3204 -4.8759 -2.9514 18 7 7.5981 -4.5415 -2.4847 19 1 8.4345 -4.9357 -2.7778 20 6 7.4575 -3.5669 -1.5470 21 6 4.0897 -2.3342 -0.7113 22 1 -0.4850 0.8400 0.0004 23 1 3.5131 -0.5760 2.1951 24 1 3.4590 -2.3403 1.9582 25 1 5.8443 -0.5199 1.3903 26 1 5.6944 -1.6590 2.7504 27 1 5.5261 -3.5473 1.1590 28 1 7.0314 -2.6351 0.8953 29 1 4.3745 -4.1613 -2.4658 30 1 8.2552 -3.0950 -0.9924 31 1 3.8298 -2.1808 -1.7587 32 1 3.6802 -3.2854 -0.3711 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261110184.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:45 Heat of formation + Delta-G solvation = 71.438356 kcal Electronic energy + Delta-G solvation = -15116.111704 eV Core-core repulsion = 12691.867483 eV Total energy + Delta-G solvation = -2424.244220 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.00797 -38.10397 -33.69500 -32.18986 -31.12209 -30.20888 -28.26783 -25.12202 -23.42750 -22.28259 -20.80851 -19.81242 -18.76877 -17.96035 -16.73043 -15.28971 -14.61325 -14.34644 -14.16563 -14.00753 -13.50400 -13.14304 -12.93330 -12.50339 -12.29266 -12.00691 -11.13910 -10.99122 -10.84975 -10.64421 -10.23090 -9.88315 -9.57663 -9.51664 -9.42615 -9.15360 -8.91287 -8.48747 -7.22978 -6.06381 -4.05972 2.00121 2.93745 3.03100 3.33605 3.41245 3.44973 4.38852 4.45593 5.04457 5.17526 5.24295 5.45132 5.55554 5.69577 5.80462 5.89043 6.02032 6.13243 6.29612 6.37262 6.48091 6.56084 6.66993 6.83178 6.92724 7.30510 7.37494 7.42861 7.54317 7.73896 7.83593 7.89753 8.53715 8.98486 9.57377 11.06715 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039107 B = 0.008067 C = 0.007426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.815053 B = 3469.910568 C = 3769.491999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.073 3.927 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.263 1.263 7 C -0.513 4.513 8 H 0.072 0.928 9 C 0.020 3.980 10 H 0.040 0.960 11 C -0.114 4.114 12 C -0.122 4.122 13 C 0.067 3.933 14 N -0.469 5.469 15 C -0.025 4.025 16 C 0.028 3.972 17 N -0.289 5.289 18 N -0.485 5.485 19 H 0.437 0.563 20 C 0.018 3.982 21 C 0.072 3.928 22 H 0.264 0.736 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.033 0.967 28 H 0.062 0.938 29 H 0.185 0.815 30 H 0.173 0.827 31 H 0.072 0.928 32 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.848 -5.380 -0.162 15.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.129 4.129 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.188 1.188 7 C -0.551 4.551 8 H 0.090 0.910 9 C 0.000 4.000 10 H 0.058 0.942 11 C -0.152 4.152 12 C -0.160 4.160 13 C -0.060 4.060 14 N -0.187 5.187 15 C -0.132 4.132 16 C -0.160 4.160 17 N -0.112 5.112 18 N -0.197 5.197 19 H 0.281 0.719 20 C -0.130 4.130 21 C -0.054 4.054 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.202 0.798 30 H 0.191 0.809 31 H 0.091 0.909 32 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 14.965 -5.655 -1.101 16.036 hybrid contribution 0.374 0.725 0.666 1.053 sum 15.339 -4.930 -0.435 16.118 Atomic orbital electron populations 1.69912 1.06362 1.27005 1.50528 1.25042 0.94654 0.99012 0.94197 0.86843 0.80188 0.83513 0.78925 1.20155 1.21818 1.18751 1.20934 0.89067 0.94610 1.50504 0.90979 1.19176 0.95982 0.94247 0.90553 0.94172 1.21888 0.91881 1.01027 1.00390 1.21722 0.98632 0.98270 0.97409 1.22111 0.98955 0.97587 0.87337 1.59565 1.11976 1.42717 1.04485 1.19286 0.92195 0.98745 1.02976 1.24143 1.00163 0.94406 0.97336 1.77187 0.88219 1.23358 1.22432 1.46160 1.07851 1.32295 1.33381 0.71944 1.22009 0.97481 0.96476 0.97013 1.22382 0.82078 0.99528 1.01443 0.92668 0.92787 0.93046 0.91882 0.92624 0.94886 0.91923 0.79808 0.80943 0.90939 0.94926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 21.51 27.01 -169.99 -4.59 16.92 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.26 -6.17 6.78 56.52 0.38 -5.78 16 7 C -0.51 -14.02 8.86 -34.44 -0.31 -14.32 16 8 H 0.07 2.13 8.06 -52.48 -0.42 1.71 16 9 C 0.02 0.45 1.95 -91.69 -0.18 0.28 16 10 H 0.04 0.96 5.25 -51.93 -0.27 0.69 16 11 C -0.11 -2.33 5.27 -26.61 -0.14 -2.47 16 12 C -0.12 -2.04 6.09 -26.65 -0.16 -2.20 16 13 C 0.07 1.04 5.34 -3.83 -0.02 1.02 16 14 N -0.47 -8.25 4.77 -171.34 -0.82 -9.07 16 15 C -0.03 -0.41 5.74 -83.90 -0.48 -0.89 16 16 C 0.03 0.45 10.79 -17.22 -0.19 0.27 16 17 N -0.29 -4.41 12.69 30.70 0.39 -4.02 16 18 N -0.48 -5.82 7.41 30.71 0.23 -5.59 16 19 H 0.44 3.54 8.96 -182.61 -1.64 1.90 16 20 C 0.02 0.22 11.31 -16.62 -0.19 0.04 16 21 C 0.07 1.45 3.68 -3.84 -0.01 1.43 16 22 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 23 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.82 7.42 -51.93 -0.39 0.44 16 29 H 0.19 2.81 7.23 -52.48 -0.38 2.43 16 30 H 0.17 1.67 7.86 -52.48 -0.41 1.26 16 31 H 0.07 1.48 7.45 -51.93 -0.39 1.10 16 32 H 0.03 0.66 8.11 -51.93 -0.42 0.24 16 LS Contribution 260.70 15.07 3.93 3.93 Total: -1.00 -31.13 260.70 -7.45 -38.58 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.58 Total: 0.57 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -1.77 Total: -14.88 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 0.57 Total: -45.12 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.59 Total: 16.92 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.13 -7.45 -38.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261110184.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.020 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds