Wall clock time and date at job start Mon Mar 30 2020 03:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48496 * 109.46867 * 270.00006 * 3 2 1 5 5 H 1.48499 * 109.47224 * 29.99935 * 3 2 1 6 6 H 1.48500 * 109.47506 * 149.99938 * 3 2 1 7 7 C 1.37878 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99491 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00241 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.50208 * 60.00190 * 9 7 2 11 11 C 1.53114 * 109.50243 * 299.92394 * 9 7 2 12 12 C 1.53126 * 109.16239 * 182.36672 * 11 9 7 13 13 C 1.53037 * 109.27880 * 57.65311 * 12 11 9 14 14 N 1.46850 * 109.52028 * 300.82273 * 13 12 11 15 15 C 1.40802 * 110.99838 * 185.83883 * 14 13 12 16 16 C 1.40222 * 126.06646 * 236.07491 * 15 14 13 17 17 N 1.30864 * 108.36212 * 179.97438 * 16 15 14 18 18 N 1.40078 * 108.36209 * 359.97438 * 17 16 15 19 19 H 0.96996 * 126.07291 * 179.97438 * 18 17 16 20 20 C 1.35701 * 126.06624 * 55.75988 * 15 14 13 21 21 C 1.46929 * 111.22205 * 61.74456 * 14 13 12 22 22 H 0.97005 * 119.99889 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.52545 * 302.27007 * 11 9 7 24 24 H 1.09002 * 109.52724 * 62.45754 * 11 9 7 25 25 H 1.08997 * 109.50509 * 177.59319 * 12 11 9 26 26 H 1.09006 * 109.49902 * 297.71480 * 12 11 9 27 27 H 1.08997 * 109.46525 * 60.83781 * 13 12 11 28 28 H 1.08999 * 109.46457 * 180.82041 * 13 12 11 29 29 H 1.08001 * 125.82269 * 359.95688 * 16 15 14 30 30 H 1.07998 * 126.22650 * 0.02562 * 20 15 14 31 31 H 1.08994 * 109.51866 * 178.25481 * 21 14 13 32 32 H 1.09007 * 109.45009 * 58.26164 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8757 -0.6798 0.8893 11 6 4.0222 -0.4750 -1.2516 12 6 5.5522 -0.5311 -1.2744 13 6 6.0048 -1.9926 -1.2393 14 7 5.4915 -2.6361 -0.0232 15 6 5.9983 -3.9432 0.1084 16 6 5.2379 -5.1142 0.2382 17 7 6.0579 -6.1294 0.3356 18 7 7.3704 -5.6444 0.2710 19 1 8.1793 -6.1775 0.3185 20 6 7.3091 -4.2938 0.1260 21 6 4.0224 -2.6367 -0.0013 22 1 -0.4850 0.8401 0.0004 23 1 3.6264 -0.9658 -2.1408 24 1 3.6961 0.5650 -1.2329 25 1 5.9202 -0.0581 -2.1849 26 1 5.9486 -0.0064 -0.4051 27 1 5.6195 -2.5133 -2.1159 28 1 7.0939 -2.0357 -1.2407 29 1 4.1594 -5.1689 0.2552 30 1 8.1506 -3.6221 0.0422 31 1 3.6717 -3.1470 0.8957 32 1 3.6464 -3.1543 -0.8839 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261110186.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:48 Heat of formation + Delta-G solvation = 79.218335 kcal Electronic energy + Delta-G solvation = -15159.762970 eV Core-core repulsion = 12735.856114 eV Total energy + Delta-G solvation = -2423.906855 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.02905 -38.17069 -33.84071 -32.15385 -31.13501 -30.23744 -28.33138 -25.05429 -23.64074 -22.27428 -20.80592 -19.88063 -18.86728 -17.95380 -16.59755 -15.44845 -14.67286 -14.36331 -14.27770 -14.03811 -13.61078 -13.16830 -13.00465 -12.60210 -12.31982 -12.02579 -11.16344 -11.06250 -10.83222 -10.52379 -10.11781 -10.01387 -9.75982 -9.47080 -9.35397 -9.09506 -8.90066 -8.50618 -7.25433 -6.05740 -4.05076 1.98401 2.91809 3.01191 3.29282 3.40924 3.43895 4.36101 4.43570 5.02642 5.15312 5.26061 5.40371 5.50763 5.67164 5.73669 5.86784 5.99093 6.10423 6.25176 6.28183 6.44647 6.52136 6.58898 6.81949 6.82826 7.19435 7.33306 7.37316 7.61562 7.72370 7.80877 7.88205 8.52698 8.97388 9.56826 11.07425 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.047859 B = 0.007931 C = 0.007059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.914859 B = 3529.457798 C = 3965.587441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.071 3.929 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.263 1.263 7 C -0.514 4.514 8 H 0.074 0.926 9 C 0.019 3.981 10 H 0.037 0.963 11 C -0.124 4.124 12 C -0.122 4.122 13 C 0.067 3.933 14 N -0.468 5.468 15 C -0.026 4.026 16 C 0.028 3.972 17 N -0.288 5.288 18 N -0.484 5.484 19 H 0.437 0.563 20 C 0.019 3.981 21 C 0.077 3.923 22 H 0.263 0.737 23 H 0.057 0.943 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.034 0.966 28 H 0.064 0.936 29 H 0.185 0.815 30 H 0.174 0.826 31 H 0.072 0.928 32 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.987 -5.386 -1.847 16.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.188 1.188 7 C -0.553 4.553 8 H 0.092 0.908 9 C 0.000 4.000 10 H 0.055 0.945 11 C -0.162 4.162 12 C -0.159 4.159 13 C -0.059 4.059 14 N -0.186 5.186 15 C -0.132 4.132 16 C -0.161 4.161 17 N -0.112 5.112 18 N -0.196 5.196 19 H 0.281 0.719 20 C -0.129 4.129 21 C -0.049 4.049 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.202 0.798 30 H 0.191 0.809 31 H 0.091 0.909 32 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 15.033 -6.184 -1.329 16.310 hybrid contribution 0.423 1.240 -0.726 1.498 sum 15.457 -4.944 -2.055 16.358 Atomic orbital electron populations 1.69897 1.06304 1.26937 1.50829 1.24975 0.94659 0.99028 0.94399 0.86838 0.80056 0.83511 0.77838 1.20719 1.22618 1.18782 1.20977 0.88638 0.94573 1.51077 0.90816 1.19179 0.96128 0.90880 0.93796 0.94541 1.22051 0.92530 1.00383 1.01198 1.21693 0.98253 0.94955 1.01042 1.22107 0.98504 0.95327 0.90009 1.59538 1.11033 1.12029 1.36047 1.19264 0.92105 0.90358 1.11484 1.24140 1.00454 0.89586 1.01872 1.77192 0.87384 1.22889 1.23694 1.46161 1.07247 1.05475 1.60766 0.71918 1.22010 0.98034 0.85684 1.07156 1.22209 0.82278 1.00061 1.00378 0.92680 0.92374 0.93404 0.92503 0.91686 0.94759 0.91765 0.79826 0.80914 0.90931 0.94671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 2 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 3 Si 0.89 21.86 24.36 -169.99 -4.14 17.72 16 4 H -0.28 -6.71 6.89 56.52 0.39 -6.32 16 5 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.26 -6.23 6.53 56.52 0.37 -5.86 16 7 C -0.51 -14.18 9.14 -34.44 -0.31 -14.50 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.02 0.45 1.85 -91.69 -0.17 0.28 16 10 H 0.04 0.89 7.20 -51.93 -0.37 0.52 16 11 C -0.12 -2.62 4.74 -26.61 -0.13 -2.74 16 12 C -0.12 -2.06 6.09 -26.65 -0.16 -2.22 16 13 C 0.07 1.05 5.34 -3.83 -0.02 1.03 16 14 N -0.47 -8.14 4.77 -171.27 -0.82 -8.96 16 15 C -0.03 -0.40 5.75 -83.90 -0.48 -0.88 16 16 C 0.03 0.44 10.79 -17.22 -0.19 0.26 16 17 N -0.29 -4.34 12.69 30.70 0.39 -3.95 16 18 N -0.48 -5.72 7.41 30.71 0.23 -5.49 16 19 H 0.44 3.46 8.96 -182.62 -1.64 1.82 16 20 C 0.02 0.23 11.31 -16.62 -0.19 0.04 16 21 C 0.08 1.53 3.63 -3.79 -0.01 1.52 16 22 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.05 1.07 3.36 -51.93 -0.17 0.90 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.84 7.42 -51.93 -0.39 0.45 16 29 H 0.18 2.75 7.24 -52.49 -0.38 2.37 16 30 H 0.17 1.64 7.86 -52.49 -0.41 1.22 16 31 H 0.07 1.45 7.47 -51.93 -0.39 1.06 16 32 H 0.03 0.70 8.11 -51.92 -0.42 0.28 16 LS Contribution 254.28 15.07 3.83 3.83 Total: -1.00 -31.41 254.28 -6.96 -38.36 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -5.46 Total: 0.42 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -1.76 Total: -15.28 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.57 Total: -45.06 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.14 Total: 17.72 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.41 -6.96 -38.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261110186.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.583 kcal (2) G-P(sol) polarization free energy of solvation -31.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds