Wall clock time and date at job start Mon Mar 30 2020 03:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48496 * 109.46867 * 270.00006 * 3 2 1 5 5 H 1.48499 * 109.47224 * 29.99935 * 3 2 1 6 6 H 1.48500 * 109.47506 * 149.99938 * 3 2 1 7 7 C 1.37878 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99491 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00241 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.50208 * 60.00190 * 9 7 2 11 11 C 1.53114 * 109.50243 * 299.92394 * 9 7 2 12 12 C 1.53126 * 109.16239 * 182.36672 * 11 9 7 13 13 C 1.53037 * 109.27880 * 57.65311 * 12 11 9 14 14 N 1.46850 * 109.52028 * 300.82273 * 13 12 11 15 15 C 1.40802 * 110.99838 * 185.83883 * 14 13 12 16 16 C 1.40222 * 126.06646 * 236.07491 * 15 14 13 17 17 N 1.30864 * 108.36212 * 179.97438 * 16 15 14 18 18 N 1.40078 * 108.36209 * 359.97438 * 17 16 15 19 19 H 0.96996 * 126.07291 * 179.97438 * 18 17 16 20 20 C 1.35701 * 126.06624 * 55.75988 * 15 14 13 21 21 C 1.46929 * 111.22205 * 61.74456 * 14 13 12 22 22 H 0.97005 * 119.99889 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.52545 * 302.27007 * 11 9 7 24 24 H 1.09002 * 109.52724 * 62.45754 * 11 9 7 25 25 H 1.08997 * 109.50509 * 177.59319 * 12 11 9 26 26 H 1.09006 * 109.49902 * 297.71480 * 12 11 9 27 27 H 1.08997 * 109.46525 * 60.83781 * 13 12 11 28 28 H 1.08999 * 109.46457 * 180.82041 * 13 12 11 29 29 H 1.08001 * 125.82269 * 359.95688 * 16 15 14 30 30 H 1.07998 * 126.22650 * 0.02562 * 20 15 14 31 31 H 1.08994 * 109.51866 * 178.25481 * 21 14 13 32 32 H 1.09007 * 109.45009 * 58.26164 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8757 -0.6798 0.8893 11 6 4.0222 -0.4750 -1.2516 12 6 5.5522 -0.5311 -1.2744 13 6 6.0048 -1.9926 -1.2393 14 7 5.4915 -2.6361 -0.0232 15 6 5.9983 -3.9432 0.1084 16 6 5.2379 -5.1142 0.2382 17 7 6.0579 -6.1294 0.3356 18 7 7.3704 -5.6444 0.2710 19 1 8.1793 -6.1775 0.3185 20 6 7.3091 -4.2938 0.1260 21 6 4.0224 -2.6367 -0.0013 22 1 -0.4850 0.8401 0.0004 23 1 3.6264 -0.9658 -2.1408 24 1 3.6961 0.5650 -1.2329 25 1 5.9202 -0.0581 -2.1849 26 1 5.9486 -0.0064 -0.4051 27 1 5.6195 -2.5133 -2.1159 28 1 7.0939 -2.0357 -1.2407 29 1 4.1594 -5.1689 0.2552 30 1 8.1506 -3.6221 0.0422 31 1 3.6717 -3.1470 0.8957 32 1 3.6464 -3.1543 -0.8839 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261110186.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:48 Heat of formation + Delta-G solvation = 55.761058 kcal Electronic energy + Delta-G solvation = -15160.780153 eV Core-core repulsion = 12735.856114 eV Total energy + Delta-G solvation = -2424.924039 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.14553 -39.60386 -35.56540 -33.89345 -32.44322 -31.73242 -29.56400 -26.91456 -25.07656 -23.69253 -22.09731 -21.18990 -20.36275 -19.23843 -18.53085 -17.02494 -16.04122 -15.69480 -15.62020 -15.40728 -15.17485 -14.73699 -14.57700 -14.25630 -13.71817 -13.44336 -12.91168 -12.65462 -12.33311 -11.94419 -11.93598 -11.72188 -11.39634 -11.07634 -10.81871 -10.64193 -10.55672 -10.42853 -8.47070 -8.27496 -6.31283 0.93934 1.32917 1.39732 1.50841 1.76915 2.07174 2.35988 3.06891 3.08505 3.98103 4.01016 4.09179 4.19330 4.35827 4.46433 4.62658 4.65196 4.69113 4.84782 4.87127 4.99897 5.04834 5.16778 5.28095 5.34339 5.50156 5.67297 5.75918 6.13305 6.34573 6.44163 6.52957 6.73713 6.78008 7.34396 8.89358 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.047859 B = 0.007931 C = 0.007059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.914859 B = 3529.457798 C = 3965.587441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.012 3.988 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.301 1.301 6 H -0.245 1.245 7 C -0.520 4.520 8 H 0.033 0.967 9 C 0.020 3.980 10 H 0.027 0.973 11 C -0.125 4.125 12 C -0.115 4.115 13 C 0.065 3.935 14 N -0.469 5.469 15 C -0.063 4.063 16 C 0.010 3.990 17 N -0.311 5.311 18 N -0.465 5.465 19 H 0.456 0.544 20 C 0.053 3.947 21 C 0.091 3.909 22 H 0.265 0.735 23 H 0.049 0.951 24 H 0.037 0.963 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.029 0.971 28 H 0.104 0.896 29 H 0.174 0.826 30 H 0.216 0.784 31 H 0.059 0.941 32 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.930 -4.720 -2.337 19.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.229 1.229 6 H -0.168 1.168 7 C -0.558 4.558 8 H 0.051 0.949 9 C 0.001 3.999 10 H 0.045 0.955 11 C -0.163 4.163 12 C -0.153 4.153 13 C -0.061 4.061 14 N -0.188 5.188 15 C -0.170 4.170 16 C -0.177 4.177 17 N -0.136 5.136 18 N -0.178 5.178 19 H 0.304 0.696 20 C -0.096 4.096 21 C -0.036 4.036 22 H 0.074 0.926 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.106 0.894 26 H 0.087 0.913 27 H 0.047 0.953 28 H 0.122 0.878 29 H 0.191 0.809 30 H 0.232 0.768 31 H 0.078 0.922 32 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 19.019 -5.569 -1.821 19.901 hybrid contribution -0.783 0.878 -0.563 1.304 sum 18.236 -4.691 -2.385 18.980 Atomic orbital electron populations 1.70054 1.08266 1.27991 1.52880 1.25861 0.95401 1.03065 0.94167 0.85790 0.79190 0.78457 0.78695 1.19148 1.22928 1.16847 1.21328 0.91457 0.93040 1.50005 0.94886 1.19078 0.92961 0.93233 0.94642 0.95478 1.21949 0.96178 0.98918 0.99208 1.21665 0.94427 0.96350 1.02812 1.22246 1.00707 0.94063 0.89098 1.59524 1.08546 1.13485 1.37240 1.19385 0.93489 0.89492 1.14585 1.24117 1.00515 0.90333 1.02767 1.77153 0.88673 1.23022 1.24721 1.46245 1.07062 1.05752 1.58771 0.69606 1.22541 0.97772 0.85958 1.03355 1.21829 0.84911 0.97569 0.99304 0.92609 0.93262 0.94516 0.89383 0.91315 0.95263 0.87766 0.80853 0.76765 0.92240 0.95837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.14 13.96 21.45 0.30 -59.84 16 2 C 0.01 0.69 5.45 84.66 0.46 1.16 16 3 Si 0.95 45.27 24.36 68.60 1.67 46.94 16 4 H -0.27 -11.92 6.89 99.48 0.69 -11.23 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.24 -10.81 6.53 99.48 0.65 -10.16 16 7 C -0.52 -29.87 9.14 25.60 0.23 -29.64 16 8 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 9 C 0.02 0.93 1.85 -11.49 -0.02 0.91 16 10 H 0.03 1.31 7.20 -2.39 -0.02 1.29 16 11 C -0.12 -5.08 4.74 30.67 0.15 -4.94 16 12 C -0.11 -3.46 6.09 30.65 0.19 -3.27 16 13 C 0.06 1.79 5.34 86.33 0.46 2.25 16 14 N -0.47 -15.35 4.77 -695.78 -3.32 -18.67 16 15 C -0.06 -1.85 5.75 37.59 0.22 -1.63 16 16 C 0.01 0.31 10.79 85.32 0.92 1.24 16 17 N -0.31 -8.92 12.69 -56.77 -0.72 -9.64 16 18 N -0.46 -9.31 7.41 -56.75 -0.42 -9.73 16 19 H 0.46 5.34 8.96 -213.34 -1.91 3.42 16 20 C 0.05 1.09 11.31 83.46 0.94 2.03 16 21 C 0.09 3.69 3.63 86.31 0.31 4.00 16 22 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 23 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 24 H 0.04 1.56 3.36 -2.39 -0.01 1.56 16 25 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 27 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.10 2.08 7.42 -2.39 -0.02 2.06 16 29 H 0.17 5.50 7.24 -2.91 -0.02 5.48 16 30 H 0.22 2.58 7.86 -2.91 -0.02 2.56 16 31 H 0.06 2.49 7.47 -2.39 -0.02 2.48 16 32 H 0.02 0.98 8.11 -2.38 -0.02 0.96 16 Total: -1.00 -70.58 254.28 0.51 -70.07 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -0.87 Total: 8.77 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 3.86 Total: -27.89 kcal Atomic # 7 Polarization: -93.72 SS G_CDS: -4.16 Total: -97.88 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.67 Total: 46.94 kcal Total: -70.58 0.51 -70.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261110186.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.835 kcal (2) G-P(sol) polarization free energy of solvation -70.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds