Wall clock time and date at job start Mon Mar 30 2020 03:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31024 * 1 3 3 Si 1.86801 * 120.00428 * 2 1 4 4 H 1.48494 * 109.47085 * 273.89282 * 3 2 1 5 5 H 1.48504 * 109.46720 * 33.88964 * 3 2 1 6 6 H 1.48499 * 109.47138 * 153.89062 * 3 2 1 7 7 C 1.39698 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00014 * 190.57006 * 7 2 1 9 9 C 1.41594 * 120.00136 * 10.56891 * 7 2 1 10 10 C 1.41879 * 126.55781 * 7.18738 * 9 7 2 11 11 N 1.30317 * 108.04762 * 179.72407 * 10 9 7 12 12 N 1.39877 * 109.23377 * 0.40932 * 11 10 9 13 13 C 1.46497 * 125.67936 * 179.84692 * 12 11 10 14 14 H 1.09003 * 110.67137 * 336.47157 * 13 12 11 15 15 C 1.54886 * 110.75690 * 213.24279 * 13 12 11 16 16 C 1.54264 * 104.19609 * 203.55853 * 15 13 12 17 17 C 1.53871 * 106.59955 * 23.60770 * 16 15 13 18 18 H 1.09000 * 110.03476 * 119.28310 * 17 16 15 19 19 N 1.46904 * 110.03297 * 240.66877 * 17 16 15 20 20 C 1.54264 * 106.63771 * 359.97438 * 17 16 15 21 21 C 1.34507 * 108.64439 * 359.58301 * 12 11 10 22 22 H 0.97000 * 119.99601 * 359.97438 * 1 2 3 23 23 H 1.08000 * 125.97669 * 0.02665 * 10 9 7 24 24 H 1.08996 * 110.48931 * 84.87892 * 15 13 12 25 25 H 1.09005 * 110.59887 * 322.28778 * 15 13 12 26 26 H 1.09000 * 110.03397 * 264.32262 * 16 15 13 27 27 H 1.09005 * 110.03361 * 142.89588 * 16 15 13 28 28 H 1.00902 * 110.99704 * 297.90538 * 19 17 16 29 29 H 1.00893 * 110.99987 * 61.85952 * 19 17 16 30 30 H 1.08998 * 110.48681 * 95.09854 * 20 17 16 31 31 H 1.09003 * 110.48553 * 217.73473 * 20 17 16 32 32 H 1.07997 * 126.40500 * 180.21722 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2444 1.6177 0.0000 4 1 2.4096 2.0938 -1.3968 5 1 1.4853 2.6275 0.7807 6 1 3.5806 1.4177 0.6161 7 6 2.0087 -1.2098 -0.0005 8 1 3.0750 -1.2179 0.1710 9 6 1.3187 -2.4256 -0.2260 10 6 -0.0413 -2.5678 -0.6042 11 7 -0.2977 -3.8404 -0.7182 12 7 0.8560 -4.5717 -0.4169 13 6 0.9695 -6.0322 -0.4296 14 1 -0.0080 -6.4953 -0.2948 15 6 1.9603 -6.5152 0.6585 16 6 2.4330 -7.8944 0.1544 17 6 2.2255 -7.8999 -1.3702 18 1 3.1800 -8.0440 -1.8764 19 7 1.2902 -8.9682 -1.7470 20 6 1.6334 -6.5244 -1.7404 21 6 1.8455 -3.7105 -0.1193 22 1 -0.4849 0.8401 0.0004 23 1 -0.7405 -1.7622 -0.7732 24 1 1.4543 -6.6130 1.6190 25 1 2.8037 -5.8296 0.7408 26 1 1.8391 -8.6839 0.6149 27 1 3.4882 -8.0359 0.3882 28 1 1.6587 -9.8748 -1.5008 29 1 0.3844 -8.8201 -1.3280 30 1 2.4233 -5.8394 -2.0483 31 1 0.8891 -6.6294 -2.5298 32 1 2.8587 -3.9674 0.1521 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261115426.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:03 Heat of formation + Delta-G solvation = 41.001939 kcal Electronic energy + Delta-G solvation = -14802.913357 eV Core-core repulsion = 12377.349315 eV Total energy + Delta-G solvation = -2425.564043 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.36472 -39.28257 -35.44676 -33.95693 -31.39024 -30.95439 -29.35713 -27.38941 -26.24503 -22.68103 -21.63328 -20.88896 -20.19541 -19.19103 -17.47928 -16.85366 -16.63284 -16.11758 -15.32541 -14.95493 -14.86751 -14.38663 -14.23278 -13.55139 -13.18516 -13.08491 -12.92194 -12.67949 -12.44879 -12.27011 -12.17173 -11.81412 -11.78790 -11.64776 -11.06268 -10.81945 -9.70231 -9.59334 -9.11401 -8.37556 -5.99281 1.29304 1.45135 1.57029 1.58425 2.15865 2.34562 2.40104 3.45234 3.54519 3.58569 3.70022 4.00065 4.20189 4.31482 4.38576 4.48351 4.55262 4.68036 4.75143 4.84756 5.00529 5.16586 5.19571 5.28343 5.35658 5.55486 5.69660 6.10073 6.25188 6.57663 6.64922 6.76380 7.11009 7.16829 7.52923 8.66117 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.062628 B = 0.006167 C = 0.005920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.974136 B = 4539.079667 C = 4728.538003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.022 3.978 3 Si 0.986 3.014 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.477 4.477 8 H 0.069 0.931 9 C -0.063 4.063 10 C 0.004 3.996 11 N -0.355 5.355 12 N -0.371 5.371 13 C 0.155 3.845 14 H 0.092 0.908 15 C -0.127 4.127 16 C -0.140 4.140 17 C 0.100 3.900 18 H 0.094 0.906 19 N -0.848 5.848 20 C -0.123 4.123 21 C -0.101 4.101 22 H 0.278 0.722 23 H 0.178 0.822 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.354 0.646 29 H 0.344 0.656 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.228 -13.245 0.370 14.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.186 4.186 3 Si 0.808 3.192 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.511 4.511 8 H 0.087 0.913 9 C -0.073 4.073 10 C -0.181 4.181 11 N -0.179 5.179 12 N -0.158 5.158 13 C 0.052 3.948 14 H 0.110 0.890 15 C -0.166 4.166 16 C -0.180 4.180 17 C -0.012 4.012 18 H 0.113 0.887 19 N -0.379 5.379 20 C -0.163 4.163 21 C -0.244 4.244 22 H 0.088 0.912 23 H 0.194 0.806 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.106 0.894 28 H 0.168 0.832 29 H 0.157 0.843 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.303 -13.823 -0.643 14.492 hybrid contribution 0.617 1.497 1.217 2.026 sum 4.920 -12.326 0.574 13.284 Atomic orbital electron populations 1.69721 1.08537 1.29098 1.42778 1.26513 0.95591 1.03877 0.92573 0.85133 0.78747 0.76569 0.78728 1.19463 1.19935 1.18487 1.18978 0.95073 0.90636 1.46439 0.91288 1.18608 0.93010 0.93163 1.02532 1.24501 0.98449 0.92419 1.02720 1.76442 1.09106 1.06083 1.26255 1.47812 1.06713 1.05276 1.55986 1.22249 1.00233 0.75049 0.97226 0.89000 1.22665 0.98373 0.98138 0.97417 1.22942 1.03169 0.95522 0.96361 1.21874 0.96247 0.89731 0.93363 0.88745 1.58877 1.06184 1.05267 1.67552 1.22786 1.00089 0.96873 0.96516 1.22426 0.95475 0.89344 1.17109 0.91179 0.80572 0.91039 0.91115 0.89808 0.89370 0.83162 0.84329 0.91992 0.91548 0.81843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.48 10.57 21.79 0.23 -48.25 16 2 C 0.02 1.19 5.45 85.17 0.46 1.65 16 3 Si 0.99 41.15 29.57 68.60 2.03 43.18 16 4 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 7 C -0.48 -27.09 9.38 23.45 0.22 -26.87 16 8 H 0.07 3.74 7.86 -2.91 -0.02 3.71 16 9 C -0.06 -3.60 5.89 -21.30 -0.13 -3.73 16 10 C 0.00 0.23 10.88 85.82 0.93 1.16 16 11 N -0.36 -18.87 12.47 -55.94 -0.70 -19.57 16 12 N -0.37 -16.91 3.61 -318.28 -1.15 -18.06 16 13 C 0.15 5.14 3.98 46.30 0.18 5.32 16 14 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 15 C -0.13 -3.31 6.21 31.67 0.20 -3.12 16 16 C -0.14 -2.49 6.57 31.32 0.21 -2.28 16 17 C 0.10 2.01 4.04 45.64 0.18 2.20 16 18 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 19 N -0.85 -14.86 9.11 -165.68 -1.51 -16.37 16 20 C -0.12 -3.58 6.18 31.69 0.20 -3.38 16 21 C -0.10 -4.94 10.63 84.53 0.90 -4.04 16 22 H 0.28 14.19 8.30 -92.71 -0.77 13.42 16 23 H 0.18 10.51 6.05 -2.91 -0.02 10.49 16 24 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.07 2.00 6.38 -2.38 -0.02 1.99 16 26 H 0.08 1.21 7.92 -2.39 -0.02 1.19 16 27 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.35 4.42 9.06 -89.69 -0.81 3.61 16 29 H 0.34 5.91 8.99 -89.70 -0.81 5.10 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 2.08 8.04 -2.39 -0.02 2.06 16 32 H 0.16 6.99 6.95 -2.91 -0.02 6.97 16 Total: -1.00 -65.90 266.12 1.78 -64.12 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: -0.48 Total: 28.03 kcal Atomic # 6 Polarization: -36.44 SS G_CDS: 3.36 Total: -33.09 kcal Atomic # 7 Polarization: -99.12 SS G_CDS: -3.13 Total: -102.24 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -65.90 1.78 -64.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115426.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.120 kcal (2) G-P(sol) polarization free energy of solvation -65.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds