Wall clock time and date at job start Mon Mar 30 2020 03:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31020 * 1 3 3 Si 1.86807 * 119.99993 * 2 1 4 4 H 1.48502 * 109.46947 * 240.00225 * 3 2 1 5 5 H 1.48503 * 109.46737 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47336 * 119.99475 * 3 2 1 7 7 C 1.39690 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00053 * 152.17256 * 7 2 1 9 9 C 1.41597 * 119.99925 * 332.16674 * 7 2 1 10 10 C 1.41878 * 126.56104 * 343.87599 * 9 7 2 11 11 N 1.30320 * 108.04949 * 179.87342 * 10 9 7 12 12 N 1.39874 * 109.23114 * 0.38806 * 11 10 9 13 13 C 1.46498 * 125.67746 * 179.77534 * 12 11 10 14 14 H 1.08997 * 110.66928 * 334.26560 * 13 12 11 15 15 C 1.54892 * 110.75576 * 211.03671 * 13 12 11 16 16 C 1.54461 * 104.10069 * 203.89090 * 15 13 12 17 17 C 1.53871 * 106.68592 * 23.34114 * 16 15 13 18 18 H 1.09003 * 110.03393 * 240.87068 * 17 16 15 19 19 N 1.46898 * 110.07394 * 119.46787 * 17 16 15 20 20 C 1.54265 * 106.59770 * 0.15990 * 17 16 15 21 21 C 1.34509 * 108.64659 * 359.74789 * 12 11 10 22 22 H 0.97001 * 120.00131 * 174.28646 * 1 2 3 23 23 H 1.08004 * 125.97034 * 0.02562 * 10 9 7 24 24 H 1.09001 * 110.48663 * 322.42225 * 15 13 12 25 25 H 1.09004 * 110.48629 * 85.05642 * 15 13 12 26 26 H 1.09001 * 109.85794 * 264.10229 * 16 15 13 27 27 H 1.09003 * 110.16424 * 142.75316 * 16 15 13 28 28 H 1.00899 * 111.00666 * 62.80486 * 19 17 16 29 29 H 1.00902 * 110.99864 * 186.76360 * 19 17 16 30 30 H 1.09003 * 110.48254 * 217.71408 * 20 17 16 31 31 H 1.08995 * 110.48690 * 95.06703 * 20 17 16 32 32 H 1.08003 * 126.40640 * 180.02562 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 3.0979 1.6964 -1.2126 5 1 1.2791 2.7465 -0.0006 6 1 3.0979 1.6966 1.2125 7 6 2.0087 -1.2097 0.0005 8 1 2.9950 -1.2640 -0.4361 9 6 1.4236 -2.3648 0.5736 10 6 0.3090 -2.4011 1.4508 11 7 0.0746 -3.6465 1.7545 12 7 1.0109 -4.4619 1.1104 13 6 1.0810 -5.9221 1.2055 14 1 0.6448 -6.2680 2.1425 15 6 2.5441 -6.4116 1.0675 16 6 2.4084 -7.8690 0.5742 17 6 1.0319 -7.9794 -0.1044 18 1 0.4185 -8.7171 0.4130 19 7 1.1937 -8.3599 -1.5140 20 6 0.3785 -6.5855 -0.0050 21 6 1.8358 -3.6823 0.3886 22 1 -0.4850 -0.8359 -0.0836 23 1 -0.2491 -1.5461 1.8031 24 1 3.0799 -5.8101 0.3331 25 1 3.0504 -6.3775 2.0322 26 1 2.4631 -8.5531 1.4211 27 1 3.1974 -8.0982 -0.1421 28 1 1.6204 -9.2705 -1.5962 29 1 0.3103 -8.3293 -2.0005 30 1 -0.6919 -6.6782 0.1790 31 1 0.5621 -6.0124 -0.9138 32 1 2.6629 -4.0156 -0.2207 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261115428.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:09 Heat of formation + Delta-G solvation = 58.424169 kcal Electronic energy + Delta-G solvation = -14826.019157 eV Core-core repulsion = 12401.210599 eV Total energy + Delta-G solvation = -2424.808558 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.69706 -37.92175 -33.85547 -32.81437 -30.07668 -28.90787 -28.00780 -25.73500 -24.35171 -21.39991 -19.92935 -19.54920 -18.71118 -17.65050 -16.13879 -15.65160 -15.37396 -14.35484 -13.88260 -13.55869 -13.46613 -13.13052 -12.60424 -12.09198 -11.77780 -11.47068 -11.21077 -11.07048 -10.97003 -10.83942 -10.75153 -10.39120 -10.20601 -9.88372 -9.03449 -8.80303 -8.66889 -7.97099 -7.24504 -6.81797 -3.91166 3.16793 3.33758 3.39429 3.54824 3.69516 4.28726 4.31529 4.40396 4.60939 4.81060 5.00628 5.39520 5.44735 5.46316 5.52848 5.57977 5.75152 5.93622 5.99284 6.12710 6.22469 6.32744 6.46310 6.61682 7.08750 7.22738 7.31863 7.44602 7.84959 8.18206 8.35103 8.57295 9.00174 9.15784 9.38553 10.48339 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.052218 B = 0.006345 C = 0.006213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.081664 B = 4412.211191 C = 4505.918650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.040 3.960 3 Si 1.063 2.937 4 H -0.281 1.281 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.531 4.531 8 H 0.064 0.936 9 C -0.017 4.017 10 C -0.009 4.009 11 N -0.323 5.323 12 N -0.375 5.375 13 C 0.175 3.825 14 H 0.089 0.911 15 C -0.127 4.127 16 C -0.115 4.115 17 C 0.088 3.912 18 H 0.037 0.963 19 N -0.843 5.843 20 C -0.131 4.131 21 C -0.124 4.124 22 H 0.289 0.711 23 H 0.165 0.835 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.338 0.662 29 H 0.341 0.659 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.643 -13.015 -0.070 13.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.176 4.176 3 Si 0.888 3.112 4 H -0.207 1.207 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.564 4.564 8 H 0.082 0.918 9 C -0.027 4.027 10 C -0.196 4.196 11 N -0.145 5.145 12 N -0.164 5.164 13 C 0.070 3.930 14 H 0.107 0.893 15 C -0.166 4.166 16 C -0.153 4.153 17 C -0.024 4.024 18 H 0.055 0.945 19 N -0.373 5.373 20 C -0.171 4.171 21 C -0.264 4.264 22 H 0.101 0.899 23 H 0.182 0.818 24 H 0.100 0.900 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.150 0.850 29 H 0.154 0.846 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.166 -11.596 0.583 11.811 hybrid contribution 0.087 -1.991 -0.377 2.028 sum 2.254 -13.586 0.206 13.774 Atomic orbital electron populations 1.70563 1.08103 1.32982 1.34680 1.26607 0.95679 1.03489 0.91836 0.83685 0.75538 0.74560 0.77415 1.20740 1.20392 1.20592 1.19500 1.04071 0.93884 1.38930 0.91751 1.18201 0.95085 0.92099 0.97275 1.23904 1.01132 0.93510 1.01013 1.76417 1.13924 1.02993 1.21164 1.47307 1.25050 1.03670 1.40357 1.21641 0.95823 0.77383 0.98150 0.89280 1.22672 0.96081 0.95737 1.02100 1.22178 0.97040 0.96536 0.99559 1.21911 0.96001 0.96031 0.88423 0.94457 1.58838 1.30628 1.34960 1.12887 1.22890 0.99190 0.94907 1.00064 1.22025 1.04131 0.90512 1.09701 0.89864 0.81754 0.90013 0.91130 0.91850 0.90494 0.85008 0.84643 0.91664 0.89628 0.84116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.68 12.61 55.53 0.70 -22.98 16 2 C 0.04 1.10 5.22 -17.36 -0.09 1.01 16 3 Si 1.06 23.27 30.01 -169.99 -5.10 18.17 16 4 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 7 C -0.53 -15.06 9.26 -37.76 -0.35 -15.41 16 8 H 0.06 1.79 7.98 -52.48 -0.42 1.37 16 9 C -0.02 -0.47 5.57 -106.84 -0.60 -1.07 16 10 C -0.01 -0.25 10.09 -16.80 -0.17 -0.42 16 11 N -0.32 -8.23 12.47 30.97 0.39 -7.84 16 12 N -0.38 -8.59 3.61 -51.99 -0.19 -8.78 16 13 C 0.17 3.05 3.99 -65.94 -0.26 2.79 16 14 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 15 C -0.13 -1.87 6.21 -24.97 -0.16 -2.03 16 16 C -0.11 -1.33 6.59 -25.51 -0.17 -1.50 16 17 C 0.09 1.05 4.03 -66.60 -0.27 0.78 16 18 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 19 N -0.84 -9.07 9.10 -3.72 -0.03 -9.11 16 20 C -0.13 -2.03 6.17 -25.08 -0.15 -2.18 16 21 C -0.12 -3.10 10.63 -15.99 -0.17 -3.27 16 22 H 0.29 8.36 6.54 -40.82 -0.27 8.10 16 23 H 0.17 4.44 6.97 -52.48 -0.37 4.07 16 24 H 0.08 1.33 6.30 -51.93 -0.33 1.01 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.87 7.92 -51.93 -0.41 0.46 16 28 H 0.34 2.85 9.07 -39.29 -0.36 2.50 16 29 H 0.34 3.34 9.01 -39.29 -0.35 2.98 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 1.54 8.05 -51.93 -0.42 1.13 16 32 H 0.14 3.25 6.86 -52.48 -0.36 2.89 16 LS Contribution 266.30 15.07 4.01 4.01 Total: -1.00 -30.81 266.30 -6.80 -37.61 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -4.19 Total: 10.21 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -2.38 Total: -21.30 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 0.86 Total: -48.70 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.10 Total: 18.17 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.81 -6.80 -37.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261115428.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.030 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds