Wall clock time and date at job start Mon Mar 30 2020 03:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86810 * 119.99647 * 2 1 4 4 H 1.48498 * 109.46969 * 269.99859 * 3 2 1 5 5 H 1.48496 * 109.47233 * 30.00217 * 3 2 1 6 6 H 1.48496 * 109.47078 * 150.00316 * 3 2 1 7 7 C 1.37878 * 120.00505 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00186 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99631 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.50167 * 60.08241 * 9 7 2 11 11 C 1.53118 * 109.50321 * 300.00158 * 9 7 2 12 12 C 1.53117 * 109.15856 * 182.40366 * 11 9 7 13 13 C 1.53043 * 109.28030 * 57.65560 * 12 11 9 14 14 N 1.46842 * 109.52289 * 300.82115 * 13 12 11 15 15 C 1.39205 * 111.00236 * 185.83491 * 14 13 12 16 16 C 1.36175 * 126.21753 * 56.04472 * 15 14 13 17 17 C 1.39773 * 107.81089 * 180.02562 * 16 15 14 18 18 N 1.30838 * 108.32625 * 0.02562 * 17 16 15 19 19 N 1.35249 * 126.22295 * 236.07133 * 15 14 13 20 20 H 0.97001 * 126.04368 * 0.23881 * 19 15 14 21 21 C 1.46856 * 111.19937 * 61.73639 * 14 13 12 22 22 H 0.96999 * 119.99977 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.52023 * 62.50226 * 11 9 7 24 24 H 1.08997 * 109.57424 * 302.34275 * 11 9 7 25 25 H 1.09003 * 109.51013 * 297.71548 * 12 11 9 26 26 H 1.09002 * 109.50363 * 177.59363 * 12 11 9 27 27 H 1.08996 * 109.46834 * 180.80050 * 13 12 11 28 28 H 1.09004 * 109.45067 * 60.83050 * 13 12 11 29 29 H 1.07995 * 126.08965 * 0.02562 * 16 15 14 30 30 H 1.07999 * 125.83995 * 180.02562 * 17 16 15 31 31 H 1.09003 * 109.45627 * 58.27247 * 21 14 13 32 32 H 1.08997 * 109.46326 * 178.23854 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6251 -2.5578 -0.8909 11 6 0.3711 -2.5813 1.2497 12 6 -0.3446 -3.9347 1.2724 13 6 0.6955 -5.0569 1.2399 14 7 1.5114 -4.9348 0.0251 15 6 2.3809 -6.0143 -0.1027 16 6 2.0316 -7.3303 -0.1256 17 6 3.2022 -8.0809 -0.2672 18 7 4.2156 -7.2554 -0.3266 19 7 3.7260 -5.9469 -0.2260 20 1 4.2582 -5.1360 -0.2379 21 6 2.2451 -3.6628 0.0038 22 1 -0.4850 0.8400 0.0004 23 1 -0.3669 -1.7794 1.2290 24 1 0.9916 -2.4823 2.1403 25 1 -0.9958 -4.0169 0.4021 26 1 -0.9397 -4.0165 2.1820 27 1 0.1889 -6.0220 1.2416 28 1 1.3376 -4.9823 2.1176 29 1 1.0289 -7.7239 -0.0483 30 1 3.2604 -9.1581 -0.3186 31 1 2.8798 -3.5949 0.8873 32 1 2.8638 -3.6154 -0.8923 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261122459.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:05 Heat of formation + Delta-G solvation = 70.319004 kcal Electronic energy + Delta-G solvation = -15132.287415 eV Core-core repulsion = 12707.994656 eV Total energy + Delta-G solvation = -2424.292759 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.09785 -38.11691 -33.93521 -32.12234 -30.98710 -29.94591 -28.33017 -25.13659 -23.72413 -21.99064 -21.01836 -19.90455 -18.87241 -18.00053 -16.22612 -15.10896 -14.69732 -14.48824 -14.17563 -13.77758 -13.54540 -13.11687 -12.87203 -12.52390 -12.32207 -11.92456 -11.06495 -10.91681 -10.81374 -10.53055 -10.29982 -10.02915 -9.86651 -9.57767 -9.34722 -8.97135 -8.83843 -8.42294 -7.58423 -6.10348 -4.17862 2.17624 3.00877 3.14892 3.23805 3.31085 3.33202 4.11745 4.38127 5.06315 5.20139 5.40627 5.50099 5.55513 5.84312 5.92251 5.94224 5.99100 6.19174 6.24711 6.46169 6.50648 6.59968 6.82756 6.96443 7.06999 7.19250 7.34177 7.61470 7.80205 7.89496 7.96308 8.02497 8.28790 8.84810 9.47578 10.95745 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044180 B = 0.007467 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.619010 B = 3749.123958 C = 4264.127768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.066 3.934 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.057 3.943 10 H 0.039 0.961 11 C -0.115 4.115 12 C -0.120 4.120 13 C 0.070 3.930 14 N -0.464 5.464 15 C 0.290 3.710 16 C -0.309 4.309 17 C 0.061 3.939 18 N -0.313 5.313 19 N -0.496 5.496 20 H 0.435 0.565 21 C 0.052 3.948 22 H 0.262 0.738 23 H 0.096 0.904 24 H 0.033 0.967 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.037 0.963 29 H 0.144 0.856 30 H 0.179 0.821 31 H 0.034 0.966 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.366 -9.910 2.140 10.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.073 0.927 9 C 0.038 3.962 10 H 0.057 0.943 11 C -0.153 4.153 12 C -0.158 4.158 13 C -0.056 4.056 14 N -0.183 5.183 15 C 0.066 3.934 16 C -0.341 4.341 17 C -0.125 4.125 18 N -0.137 5.137 19 N -0.210 5.210 20 H 0.279 0.721 21 C -0.074 4.074 22 H 0.072 0.928 23 H 0.115 0.885 24 H 0.052 0.948 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.162 0.838 30 H 0.196 0.804 31 H 0.052 0.948 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.099 -9.660 1.646 10.022 hybrid contribution 0.305 1.310 0.566 1.459 sum 2.404 -8.351 2.212 8.967 Atomic orbital electron populations 1.69871 1.05876 1.26642 1.50012 1.24920 0.94860 0.99071 0.94785 0.86585 0.79816 0.83359 0.78192 1.20592 1.21126 1.19971 1.21058 0.92820 0.90407 1.51675 0.92725 1.18669 0.92348 0.89778 0.95369 0.94314 1.21715 1.00247 0.94923 0.98369 1.21753 0.97046 0.95925 1.01112 1.22227 0.95181 1.00285 0.87859 1.59294 1.20466 1.00959 1.37563 1.20014 0.82521 0.93647 0.97221 1.20783 0.99999 0.90157 1.23188 1.23589 0.90307 0.99681 0.98928 1.77245 1.22395 0.86631 1.27418 1.46730 1.04770 1.08045 1.61427 0.72066 1.22560 0.97452 0.87866 0.99508 0.92823 0.88544 0.94770 0.91561 0.92477 0.90775 0.94478 0.83794 0.80398 0.94811 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.30 11.35 55.43 0.63 -23.68 16 2 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -13.61 8.56 -34.44 -0.29 -13.91 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.06 1.35 2.26 -91.69 -0.21 1.14 16 10 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 11 C -0.11 -2.54 5.02 -26.61 -0.13 -2.67 16 12 C -0.12 -2.17 6.09 -26.65 -0.16 -2.33 16 13 C 0.07 1.17 5.32 -3.83 -0.02 1.15 16 14 N -0.46 -8.42 4.73 -173.26 -0.82 -9.24 16 15 C 0.29 4.94 6.51 -153.41 -1.00 3.95 16 16 C -0.31 -4.70 10.09 -39.75 -0.40 -5.10 16 17 C 0.06 0.87 12.01 -17.40 -0.21 0.66 16 18 N -0.31 -5.11 12.69 30.60 0.39 -4.72 16 19 N -0.50 -8.16 6.99 31.10 0.22 -7.95 16 20 H 0.43 6.57 7.76 -182.62 -1.42 5.15 16 21 C 0.05 1.04 3.72 -3.83 -0.01 1.02 16 22 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 23 H 0.10 2.40 6.15 -51.93 -0.32 2.09 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 1.07 7.41 -51.93 -0.38 0.69 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.14 1.93 7.86 -52.49 -0.41 1.51 16 30 H 0.18 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.28 7.63 -51.93 -0.40 0.89 16 LS Contribution 261.29 15.07 3.94 3.94 Total: -1.00 -28.07 261.29 -8.64 -36.70 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.43 Total: 3.83 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -2.54 Total: -14.43 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.41 Total: -45.58 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.07 -8.64 -36.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261122459.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.022 kcal (2) G-P(sol) polarization free energy of solvation -28.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds