Wall clock time and date at job start Mon Mar 30 2020 03:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86810 * 119.99647 * 2 1 4 4 H 1.48498 * 109.46969 * 269.99859 * 3 2 1 5 5 H 1.48496 * 109.47233 * 30.00217 * 3 2 1 6 6 H 1.48496 * 109.47078 * 150.00316 * 3 2 1 7 7 C 1.37878 * 120.00505 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00186 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99631 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.50167 * 60.08241 * 9 7 2 11 11 C 1.53118 * 109.50321 * 300.00158 * 9 7 2 12 12 C 1.53117 * 109.15856 * 182.40366 * 11 9 7 13 13 C 1.53043 * 109.28030 * 57.65560 * 12 11 9 14 14 N 1.46842 * 109.52289 * 300.82115 * 13 12 11 15 15 C 1.39205 * 111.00236 * 185.83491 * 14 13 12 16 16 C 1.36175 * 126.21753 * 56.04472 * 15 14 13 17 17 C 1.39773 * 107.81089 * 180.02562 * 16 15 14 18 18 N 1.30838 * 108.32625 * 0.02562 * 17 16 15 19 19 N 1.35249 * 126.22295 * 236.07133 * 15 14 13 20 20 H 0.97001 * 126.04368 * 0.23881 * 19 15 14 21 21 C 1.46856 * 111.19937 * 61.73639 * 14 13 12 22 22 H 0.96999 * 119.99977 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.52023 * 62.50226 * 11 9 7 24 24 H 1.08997 * 109.57424 * 302.34275 * 11 9 7 25 25 H 1.09003 * 109.51013 * 297.71548 * 12 11 9 26 26 H 1.09002 * 109.50363 * 177.59363 * 12 11 9 27 27 H 1.08996 * 109.46834 * 180.80050 * 13 12 11 28 28 H 1.09004 * 109.45067 * 60.83050 * 13 12 11 29 29 H 1.07995 * 126.08965 * 0.02562 * 16 15 14 30 30 H 1.07999 * 125.83995 * 180.02562 * 17 16 15 31 31 H 1.09003 * 109.45627 * 58.27247 * 21 14 13 32 32 H 1.08997 * 109.46326 * 178.23854 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6251 -2.5578 -0.8909 11 6 0.3711 -2.5813 1.2497 12 6 -0.3446 -3.9347 1.2724 13 6 0.6955 -5.0569 1.2399 14 7 1.5114 -4.9348 0.0251 15 6 2.3809 -6.0143 -0.1027 16 6 2.0316 -7.3303 -0.1256 17 6 3.2022 -8.0809 -0.2672 18 7 4.2156 -7.2554 -0.3266 19 7 3.7260 -5.9469 -0.2260 20 1 4.2582 -5.1360 -0.2379 21 6 2.2451 -3.6628 0.0038 22 1 -0.4850 0.8400 0.0004 23 1 -0.3669 -1.7794 1.2290 24 1 0.9916 -2.4823 2.1403 25 1 -0.9958 -4.0169 0.4021 26 1 -0.9397 -4.0165 2.1820 27 1 0.1889 -6.0220 1.2416 28 1 1.3376 -4.9823 2.1176 29 1 1.0289 -7.7239 -0.0483 30 1 3.2604 -9.1581 -0.3186 31 1 2.8798 -3.5949 0.8873 32 1 2.8638 -3.6154 -0.8923 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261122459.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:04 Heat of formation + Delta-G solvation = 52.905142 kcal Electronic energy + Delta-G solvation = -15133.042536 eV Core-core repulsion = 12707.994656 eV Total energy + Delta-G solvation = -2425.047881 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.33662 -39.60366 -35.70346 -33.72303 -32.44168 -31.46777 -29.66580 -27.01094 -25.22743 -23.55466 -22.29477 -21.19586 -20.49968 -19.42529 -18.13048 -16.72990 -16.27221 -15.84110 -15.59322 -15.27978 -14.75062 -14.65534 -14.45729 -14.12856 -13.78938 -13.42168 -12.90680 -12.70273 -12.59585 -11.98842 -11.87303 -11.69625 -11.48693 -11.14812 -10.99719 -10.70764 -10.42978 -10.15623 -8.88303 -8.12886 -6.27256 0.94829 1.40019 1.41549 1.50501 1.83585 1.99418 2.38947 2.80157 3.15278 3.93566 4.02199 4.09458 4.17443 4.34692 4.53565 4.62786 4.69868 4.77227 4.80751 4.95248 5.01890 5.09938 5.32611 5.40281 5.57111 5.61215 5.81263 5.91721 5.95115 6.09653 6.31757 6.54901 6.80778 6.84050 7.41240 8.91980 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044180 B = 0.007467 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.619010 B = 3749.123958 C = 4264.127768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.018 3.982 3 Si 0.953 3.047 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.540 4.540 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.002 0.998 11 C -0.109 4.109 12 C -0.112 4.112 13 C 0.073 3.927 14 N -0.471 5.471 15 C 0.267 3.733 16 C -0.304 4.304 17 C 0.069 3.931 18 N -0.334 5.334 19 N -0.504 5.504 20 H 0.436 0.564 21 C 0.068 3.932 22 H 0.262 0.738 23 H 0.064 0.936 24 H 0.028 0.972 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.105 0.895 28 H 0.039 0.961 29 H 0.165 0.835 30 H 0.220 0.780 31 H 0.035 0.965 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.720 -11.518 2.628 11.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.779 3.221 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.579 4.579 8 H 0.072 0.928 9 C 0.036 3.964 10 H 0.020 0.980 11 C -0.147 4.147 12 C -0.149 4.149 13 C -0.053 4.053 14 N -0.191 5.191 15 C 0.044 3.956 16 C -0.336 4.336 17 C -0.117 4.117 18 N -0.158 5.158 19 N -0.218 5.218 20 H 0.280 0.720 21 C -0.058 4.058 22 H 0.071 0.929 23 H 0.083 0.917 24 H 0.047 0.953 25 H 0.076 0.924 26 H 0.102 0.898 27 H 0.123 0.877 28 H 0.057 0.943 29 H 0.183 0.817 30 H 0.236 0.764 31 H 0.053 0.947 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.460 -11.281 2.135 11.742 hybrid contribution 0.190 1.743 0.397 1.798 sum 2.650 -9.538 2.532 10.218 Atomic orbital electron populations 1.70007 1.07093 1.27270 1.50727 1.25666 0.95645 1.02214 0.94597 0.85634 0.78758 0.79549 0.78173 1.20313 1.20806 1.19347 1.21449 0.93057 0.91892 1.51460 0.92828 1.18569 0.92739 0.90617 0.94465 0.97980 1.21525 0.99347 0.96618 0.97204 1.21648 0.97244 0.93942 1.02114 1.22277 0.94673 1.00919 0.87383 1.59252 1.20822 1.00390 1.38620 1.20154 0.82706 0.93913 0.98844 1.21152 1.01357 0.89334 1.21728 1.24277 0.89161 1.01351 0.96902 1.77245 1.23567 0.86747 1.28242 1.46796 1.04724 1.08405 1.61840 0.71996 1.22184 0.96355 0.87906 0.99386 0.92882 0.91735 0.95319 0.92354 0.89788 0.87720 0.94281 0.81734 0.76358 0.94722 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.32 11.35 21.45 0.24 -51.07 16 2 C 0.02 0.99 5.30 84.65 0.45 1.43 16 3 Si 0.95 42.59 29.54 68.60 2.03 44.62 16 4 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.54 -28.84 8.56 25.60 0.22 -28.62 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 9 C 0.05 2.67 2.26 -11.49 -0.03 2.64 16 10 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 11 C -0.11 -4.89 5.02 30.67 0.15 -4.74 16 12 C -0.11 -3.90 6.09 30.65 0.19 -3.71 16 13 C 0.07 2.27 5.32 86.33 0.46 2.73 16 14 N -0.47 -16.59 4.73 -702.08 -3.32 -19.92 16 15 C 0.27 8.60 6.51 131.43 0.86 9.46 16 16 C -0.30 -8.23 10.09 22.16 0.22 -8.01 16 17 C 0.07 1.71 12.01 85.21 1.02 2.73 16 18 N -0.33 -10.17 12.69 -57.09 -0.72 -10.90 16 19 N -0.50 -15.95 6.99 -55.51 -0.39 -16.34 16 20 H 0.44 13.00 7.76 -213.34 -1.66 11.35 16 21 C 0.07 2.74 3.72 86.32 0.32 3.06 16 22 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 23 H 0.06 3.32 6.15 -2.39 -0.01 3.30 16 24 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.08 2.47 8.14 -2.39 -0.02 2.46 16 27 H 0.10 2.65 7.41 -2.39 -0.02 2.63 16 28 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.17 3.70 7.86 -2.91 -0.02 3.68 16 30 H 0.22 3.36 8.06 -2.91 -0.02 3.34 16 31 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 2.47 7.63 -2.39 -0.02 2.46 16 Total: -1.00 -60.69 261.29 1.16 -59.53 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -0.54 Total: 17.10 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 3.87 Total: -23.02 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -4.19 Total: -98.23 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -60.69 1.16 -59.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261122459.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.437 kcal (2) G-P(sol) polarization free energy of solvation -60.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds