Wall clock time and date at job start Mon Mar 30 2020 02:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00650 * 2 1 4 4 C 1.46903 * 110.99620 * 123.95361 * 2 1 3 5 5 H 1.09003 * 109.47134 * 150.63014 * 4 2 1 6 6 C 1.50695 * 109.47214 * 30.63195 * 4 2 1 7 7 H 1.08001 * 120.00193 * 245.40906 * 6 4 2 8 8 C 1.37881 * 120.00284 * 65.41503 * 6 4 2 9 9 N 1.31524 * 119.99893 * 7.36711 * 8 6 4 10 10 Si 1.86793 * 120.00300 * 187.37222 * 8 6 4 11 11 H 1.48501 * 109.47598 * 89.99588 * 10 8 6 12 12 H 1.48505 * 109.47153 * 209.99945 * 10 8 6 13 13 H 1.48498 * 109.46954 * 329.99504 * 10 8 6 14 14 C 1.50693 * 109.47171 * 270.62893 * 4 2 1 15 15 C 1.38268 * 119.94321 * 44.59851 * 14 4 2 16 16 C 1.38143 * 120.05721 * 179.72462 * 15 14 4 17 17 C 1.38736 * 119.94243 * 0.52257 * 16 15 14 18 18 O 1.35905 * 120.05711 * 179.72646 * 17 16 15 19 19 C 1.38727 * 119.88742 * 359.75206 * 17 16 15 20 20 C 1.38147 * 119.94739 * 359.97438 * 19 17 16 21 21 H 1.09001 * 109.46956 * 40.39548 * 1 2 3 22 22 H 1.09002 * 109.47294 * 280.40543 * 1 2 3 23 23 H 1.08997 * 109.47640 * 160.40069 * 1 2 3 24 24 H 1.09002 * 109.47028 * 51.94386 * 3 2 1 25 25 H 1.08990 * 109.47440 * 171.94695 * 3 2 1 26 26 H 1.08998 * 109.46774 * 291.94973 * 3 2 1 27 27 H 0.96995 * 119.99947 * 180.02562 * 9 8 6 28 28 H 1.08000 * 119.96959 * 359.97438 * 15 14 4 29 29 H 1.07997 * 120.02967 * 180.29527 * 16 15 14 30 30 H 0.96698 * 113.99680 * 270.02943 * 18 17 16 31 31 H 1.08000 * 120.02983 * 179.97438 * 19 17 16 32 32 H 1.08002 * 119.97424 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 2.9617 -1.1943 0.8713 6 6 1.0340 -1.8731 1.4857 7 1 0.5206 -1.8637 2.4358 8 6 0.8098 -2.8981 0.5912 9 7 1.5384 -2.9898 -0.5000 10 14 -0.5286 -4.1566 0.9290 11 1 -1.8073 -3.6911 0.3345 12 1 -0.1473 -5.4589 0.3256 13 1 -0.6952 -4.3204 2.3955 14 6 2.1608 0.1474 2.3248 15 6 1.1601 1.0443 2.6502 16 6 1.3068 1.8788 3.7413 17 6 2.4642 1.8238 4.5044 18 8 2.6133 2.6475 5.5750 19 6 3.4691 0.9269 4.1724 20 6 3.3152 0.0907 3.0837 21 1 -0.3633 0.7827 -0.6660 22 1 -0.3634 0.1856 1.0108 23 1 -0.3634 -0.9681 -0.3447 24 1 1.5344 1.9376 0.8092 25 1 3.0756 1.3458 0.1439 26 1 1.7672 1.8482 -0.9532 27 1 1.3804 -3.7107 -1.1294 28 1 0.2613 1.0898 2.0531 29 1 0.5229 2.5759 3.9978 30 1 3.0282 3.4952 5.3642 31 1 4.3712 0.8825 4.7647 32 1 4.0971 -0.6080 2.8251 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261127014.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:49 Heat of formation + Delta-G solvation = 2.104136 kcal Electronic energy + Delta-G solvation = -15321.448118 eV Core-core repulsion = 12861.904589 eV Total energy + Delta-G solvation = -2459.543529 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.52164 -37.46800 -35.19553 -32.36853 -30.51440 -29.67671 -27.13452 -26.03918 -23.72914 -22.20579 -21.62690 -19.59511 -18.02266 -16.41930 -15.61080 -15.24115 -14.91638 -14.42484 -13.84374 -13.64857 -13.51374 -12.86052 -12.55287 -11.96128 -11.73374 -11.60861 -11.22536 -11.09801 -11.05399 -10.60369 -10.45776 -10.25749 -9.94850 -9.76360 -9.30843 -8.46500 -8.39532 -7.76994 -6.79880 -6.04907 -4.13871 1.83462 1.90411 3.26752 3.34863 3.38320 4.17688 4.40940 4.61526 5.11436 5.41229 5.42497 5.64046 5.75641 6.00265 6.06851 6.17000 6.28400 6.41447 6.46588 6.49874 6.61756 6.74381 6.91494 6.98992 7.14986 7.28536 7.37012 7.68511 7.77305 7.95682 8.01452 8.49088 8.66001 8.98238 9.51450 11.00661 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034368 B = 0.009181 C = 0.008404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.511106 B = 3049.142920 C = 3330.778139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.517 5.517 3 C 0.015 3.985 4 C 0.242 3.758 5 H 0.060 0.940 6 C -0.531 4.531 7 H 0.057 0.943 8 C 0.083 3.917 9 N -0.852 5.852 10 Si 0.883 3.117 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.273 1.273 14 C -0.065 4.065 15 C -0.109 4.109 16 C -0.150 4.150 17 C 0.070 3.930 18 O -0.504 6.504 19 C -0.147 4.147 20 C -0.108 4.108 21 H 0.024 0.976 22 H 0.024 0.976 23 H 0.070 0.930 24 H 0.021 0.979 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.261 0.739 28 H 0.131 0.869 29 H 0.116 0.884 30 H 0.378 0.622 31 H 0.117 0.883 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.294 8.674 4.356 9.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.240 5.240 3 C -0.134 4.134 4 C 0.136 3.864 5 H 0.077 0.923 6 C -0.570 4.570 7 H 0.075 0.925 8 C -0.124 4.124 9 N -0.487 5.487 10 Si 0.710 3.290 11 H -0.204 1.204 12 H -0.211 1.211 13 H -0.198 1.198 14 C -0.067 4.067 15 C -0.127 4.127 16 C -0.169 4.169 17 C 0.026 3.974 18 O -0.313 6.313 19 C -0.165 4.165 20 C -0.127 4.127 21 H 0.043 0.957 22 H 0.042 0.958 23 H 0.089 0.911 24 H 0.039 0.961 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.148 0.852 29 H 0.134 0.866 30 H 0.232 0.768 31 H 0.135 0.865 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.232 7.856 4.028 8.914 hybrid contribution -0.764 0.107 0.704 1.045 sum 0.468 7.964 4.732 9.275 Atomic orbital electron populations 1.22137 0.89178 1.00647 0.97665 1.62698 1.07193 1.09568 1.44529 1.22582 0.99583 0.92278 0.98921 1.18591 0.98072 0.88756 0.80950 0.92258 1.20871 1.26236 1.06678 1.03168 0.92469 1.24940 0.95688 0.96744 0.95030 1.70055 1.37011 1.31107 1.10483 0.86750 0.82613 0.81010 0.78657 1.20410 1.21128 1.19832 1.21388 0.92092 0.95023 0.98231 1.21272 0.99651 0.95659 0.96130 1.21300 0.97899 1.01769 0.95910 1.18342 0.94633 0.95190 0.89264 1.84834 1.83698 1.30569 1.32189 1.21285 0.98658 0.98439 0.98162 1.20997 0.98228 0.98577 0.94867 0.95680 0.95785 0.91115 0.96066 0.93007 0.93682 0.92907 0.85177 0.86613 0.76771 0.86487 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.13 8.14 60.06 0.49 1.62 16 2 N -0.52 -11.90 5.02 -246.01 -1.24 -13.13 16 3 C 0.02 0.29 8.41 60.06 0.51 0.80 16 4 C 0.24 5.84 2.30 -70.02 -0.16 5.68 16 5 H 0.06 1.59 7.91 -51.93 -0.41 1.18 16 6 C -0.53 -13.93 6.64 -34.44 -0.23 -14.16 16 7 H 0.06 1.54 7.75 -52.49 -0.41 1.13 16 8 C 0.08 2.20 3.97 -17.81 -0.07 2.13 16 9 N -0.85 -23.69 13.17 55.43 0.73 -22.96 16 10 Si 0.88 20.60 29.54 -169.99 -5.02 15.58 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 14 C -0.07 -1.37 3.64 -104.60 -0.38 -1.75 16 15 C -0.11 -2.12 6.75 -39.61 -0.27 -2.39 16 16 C -0.15 -2.61 9.99 -39.43 -0.39 -3.00 16 17 C 0.07 1.17 6.71 -39.22 -0.26 0.91 16 18 O -0.50 -7.32 13.50 -19.44 -0.26 -7.58 16 19 C -0.15 -2.51 9.99 -39.43 -0.39 -2.90 16 20 C -0.11 -2.06 9.66 -39.60 -0.38 -2.45 16 21 H 0.02 0.48 7.94 -51.93 -0.41 0.07 16 22 H 0.02 0.51 4.77 -51.93 -0.25 0.27 16 23 H 0.07 1.72 6.49 -51.93 -0.34 1.38 16 24 H 0.02 0.39 5.04 -51.93 -0.26 0.13 16 25 H 0.05 0.99 7.92 -51.93 -0.41 0.58 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.13 2.54 4.44 -52.49 -0.23 2.31 16 29 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 30 H 0.38 3.51 9.06 45.56 0.41 3.92 16 31 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.12 2.22 8.00 -52.49 -0.42 1.80 16 LS Contribution 260.66 15.07 3.93 3.93 Total: -1.00 -29.01 260.66 -6.54 -35.55 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -3.13 Total: 4.12 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -1.55 Total: -15.51 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: -0.51 Total: -36.09 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.26 Total: -7.58 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.01 -6.54 -35.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261127014.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.656 kcal (2) G-P(sol) polarization free energy of solvation -29.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds