Wall clock time and date at job start Mon Mar 30 2020 02:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00650 * 2 1 4 4 C 1.46903 * 110.99620 * 123.95361 * 2 1 3 5 5 H 1.09003 * 109.47134 * 150.63014 * 4 2 1 6 6 C 1.50695 * 109.47214 * 30.63195 * 4 2 1 7 7 H 1.08001 * 120.00193 * 245.40906 * 6 4 2 8 8 C 1.37881 * 120.00284 * 65.41503 * 6 4 2 9 9 N 1.31524 * 119.99893 * 7.36711 * 8 6 4 10 10 Si 1.86793 * 120.00300 * 187.37222 * 8 6 4 11 11 H 1.48501 * 109.47598 * 89.99588 * 10 8 6 12 12 H 1.48505 * 109.47153 * 209.99945 * 10 8 6 13 13 H 1.48498 * 109.46954 * 329.99504 * 10 8 6 14 14 C 1.50693 * 109.47171 * 270.62893 * 4 2 1 15 15 C 1.38268 * 119.94321 * 44.59851 * 14 4 2 16 16 C 1.38143 * 120.05721 * 179.72462 * 15 14 4 17 17 C 1.38736 * 119.94243 * 0.52257 * 16 15 14 18 18 O 1.35905 * 120.05711 * 179.72646 * 17 16 15 19 19 C 1.38727 * 119.88742 * 359.75206 * 17 16 15 20 20 C 1.38147 * 119.94739 * 359.97438 * 19 17 16 21 21 H 1.09001 * 109.46956 * 40.39548 * 1 2 3 22 22 H 1.09002 * 109.47294 * 280.40543 * 1 2 3 23 23 H 1.08997 * 109.47640 * 160.40069 * 1 2 3 24 24 H 1.09002 * 109.47028 * 51.94386 * 3 2 1 25 25 H 1.08990 * 109.47440 * 171.94695 * 3 2 1 26 26 H 1.08998 * 109.46774 * 291.94973 * 3 2 1 27 27 H 0.96995 * 119.99947 * 180.02562 * 9 8 6 28 28 H 1.08000 * 119.96959 * 359.97438 * 15 14 4 29 29 H 1.07997 * 120.02967 * 180.29527 * 16 15 14 30 30 H 0.96698 * 113.99680 * 270.02943 * 18 17 16 31 31 H 1.08000 * 120.02983 * 179.97438 * 19 17 16 32 32 H 1.08002 * 119.97424 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 2.9617 -1.1943 0.8713 6 6 1.0340 -1.8731 1.4857 7 1 0.5206 -1.8637 2.4358 8 6 0.8098 -2.8981 0.5912 9 7 1.5384 -2.9898 -0.5000 10 14 -0.5286 -4.1566 0.9290 11 1 -1.8073 -3.6911 0.3345 12 1 -0.1473 -5.4589 0.3256 13 1 -0.6952 -4.3204 2.3955 14 6 2.1608 0.1474 2.3248 15 6 1.1601 1.0443 2.6502 16 6 1.3068 1.8788 3.7413 17 6 2.4642 1.8238 4.5044 18 8 2.6133 2.6475 5.5750 19 6 3.4691 0.9269 4.1724 20 6 3.3152 0.0907 3.0837 21 1 -0.3633 0.7827 -0.6660 22 1 -0.3634 0.1856 1.0108 23 1 -0.3634 -0.9681 -0.3447 24 1 1.5344 1.9376 0.8092 25 1 3.0756 1.3458 0.1439 26 1 1.7672 1.8482 -0.9532 27 1 1.3804 -3.7107 -1.1294 28 1 0.2613 1.0898 2.0531 29 1 0.5229 2.5759 3.9978 30 1 3.0282 3.4952 5.3642 31 1 4.3712 0.8825 4.7647 32 1 4.0971 -0.6080 2.8251 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261127014.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:49 Heat of formation + Delta-G solvation = -18.971457 kcal Electronic energy + Delta-G solvation = -15322.362025 eV Core-core repulsion = 12861.904589 eV Total energy + Delta-G solvation = -2460.457435 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.97583 -38.91763 -36.66138 -34.35078 -31.95815 -31.22176 -28.89057 -27.70939 -25.57716 -23.62383 -23.12683 -21.29022 -19.27996 -18.39808 -17.16952 -16.75545 -16.37648 -16.10633 -15.36999 -15.30903 -15.18226 -14.32779 -14.10776 -13.77078 -13.32514 -13.11830 -12.88595 -12.79215 -12.57948 -12.40858 -12.19400 -11.89053 -11.77827 -11.25176 -11.16833 -10.48380 -9.81905 -9.24924 -8.52253 -8.07582 -6.22049 0.43226 0.49060 1.40291 1.43249 1.51353 2.42489 2.82164 3.15234 3.37701 3.86106 4.02934 4.11896 4.22416 4.51459 4.58697 4.68737 4.73886 4.84004 5.06004 5.06967 5.07890 5.09387 5.37565 5.48275 5.51941 5.57267 5.71555 5.94663 5.99099 6.10928 6.63166 6.83302 6.93313 7.08021 7.46614 8.97774 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034368 B = 0.009181 C = 0.008404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.511106 B = 3049.142920 C = 3330.778139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.541 5.541 3 C 0.022 3.978 4 C 0.249 3.751 5 H 0.018 0.982 6 C -0.537 4.537 7 H 0.045 0.955 8 C 0.044 3.956 9 N -0.885 5.885 10 Si 0.938 3.062 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.273 1.273 14 C -0.091 4.091 15 C -0.115 4.115 16 C -0.149 4.149 17 C 0.084 3.916 18 O -0.506 6.506 19 C -0.144 4.144 20 C -0.119 4.119 21 H 0.050 0.950 22 H 0.027 0.973 23 H 0.040 0.960 24 H 0.034 0.966 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.260 0.740 28 H 0.126 0.874 29 H 0.141 0.859 30 H 0.406 0.594 31 H 0.143 0.857 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.875 10.284 5.754 11.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.264 5.264 3 C -0.126 4.126 4 C 0.143 3.857 5 H 0.036 0.964 6 C -0.575 4.575 7 H 0.063 0.937 8 C -0.160 4.160 9 N -0.521 5.521 10 Si 0.763 3.237 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.198 1.198 14 C -0.093 4.093 15 C -0.133 4.133 16 C -0.168 4.168 17 C 0.040 3.960 18 O -0.318 6.318 19 C -0.163 4.163 20 C -0.138 4.138 21 H 0.069 0.931 22 H 0.045 0.955 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.143 0.857 29 H 0.159 0.841 30 H 0.264 0.736 31 H 0.161 0.839 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.817 9.498 5.434 10.973 hybrid contribution -0.572 -0.278 0.365 0.734 sum 0.245 9.219 5.800 10.894 Atomic orbital electron populations 1.22013 0.88631 0.99821 0.98347 1.62466 1.07830 1.11623 1.44485 1.22546 0.99283 0.90544 1.00236 1.18202 0.95496 0.89287 0.82753 0.96386 1.21039 1.26383 1.07594 1.02507 0.93694 1.25540 0.97273 0.98365 0.94848 1.70162 1.38509 1.31946 1.11445 0.85882 0.80507 0.78951 0.78309 1.19720 1.20918 1.19813 1.21092 0.93906 0.96072 0.98201 1.21197 0.98998 0.95952 0.97137 1.21518 0.98805 1.01445 0.94983 1.18383 0.93965 0.94892 0.88786 1.84768 1.84052 1.31905 1.31101 1.21498 0.99799 0.97552 0.97403 1.21060 0.97762 0.99293 0.95678 0.93091 0.95470 0.94154 0.94753 0.93370 0.92059 0.93039 0.85663 0.84104 0.73553 0.83916 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.61 8.14 127.69 1.04 3.65 16 2 N -0.54 -25.14 5.02 -932.25 -4.68 -29.82 16 3 C 0.02 0.84 8.41 127.69 1.07 1.91 16 4 C 0.25 12.35 2.30 43.42 0.10 12.45 16 5 H 0.02 1.03 7.91 -2.39 -0.02 1.01 16 6 C -0.54 -28.87 6.64 25.60 0.17 -28.70 16 7 H 0.04 2.47 7.75 -2.91 -0.02 2.45 16 8 C 0.04 2.36 3.97 84.65 0.34 2.69 16 9 N -0.88 -50.59 13.17 21.45 0.28 -50.30 16 10 Si 0.94 42.90 29.54 68.60 2.03 44.93 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 14 C -0.09 -3.81 3.64 -19.85 -0.07 -3.89 16 15 C -0.11 -4.30 6.75 22.25 0.15 -4.15 16 16 C -0.15 -4.73 9.99 22.37 0.22 -4.50 16 17 C 0.08 2.54 6.71 22.51 0.15 2.69 16 18 O -0.51 -12.42 13.50 -92.48 -1.25 -13.66 16 19 C -0.14 -4.56 9.99 22.37 0.22 -4.33 16 20 C -0.12 -4.50 9.66 22.26 0.21 -4.29 16 21 H 0.05 1.91 7.94 -2.39 -0.02 1.89 16 22 H 0.03 1.16 4.77 -2.39 -0.01 1.14 16 23 H 0.04 1.98 6.49 -2.39 -0.02 1.96 16 24 H 0.03 1.22 5.04 -2.39 -0.01 1.20 16 25 H 0.05 1.83 7.92 -2.39 -0.02 1.81 16 26 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 28 H 0.13 4.75 4.44 -2.91 -0.01 4.73 16 29 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 30 H 0.41 5.54 9.06 -74.06 -0.67 4.87 16 31 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 32 H 0.12 4.44 8.00 -2.91 -0.02 4.41 16 Total: -1.00 -62.47 260.66 0.45 -62.02 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.46 Total: 13.29 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 3.61 Total: -26.46 kcal Atomic # 7 Polarization: -75.72 SS G_CDS: -4.40 Total: -80.12 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -1.25 Total: -13.66 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -62.47 0.45 -62.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261127014.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.052 kcal (2) G-P(sol) polarization free energy of solvation -62.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds