Wall clock time and date at job start Mon Mar 30 2020 03:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30850 * 1 3 3 Si 1.86800 * 120.00106 * 2 1 4 4 H 1.48502 * 109.46883 * 239.99871 * 3 2 1 5 5 H 1.48500 * 109.46942 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47477 * 119.99710 * 3 2 1 7 7 C 1.39877 * 120.00321 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00400 * 180.02562 * 7 2 1 9 9 C 1.41396 * 119.99604 * 0.02562 * 7 2 1 10 10 N 1.35098 * 126.15831 * 359.97438 * 9 7 2 11 11 C 1.30773 * 107.27847 * 179.97438 * 10 9 7 12 12 N 1.34834 * 107.85682 * 0.02562 * 11 10 9 13 13 C 1.46502 * 125.67947 * 179.73662 * 12 11 10 14 14 C 1.53004 * 109.47222 * 34.99865 * 13 12 11 15 15 C 1.53002 * 109.47039 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47175 * 60.00299 * 15 14 13 17 17 C 1.53008 * 109.46885 * 299.99435 * 16 15 14 18 18 C 1.52998 * 109.47144 * 274.99875 * 13 12 11 19 19 N 1.28848 * 108.64413 * 359.97438 * 12 11 10 20 20 H 0.97002 * 120.00266 * 0.02562 * 1 2 3 21 21 H 1.07999 * 126.07307 * 180.02562 * 11 10 9 22 22 H 1.09002 * 109.47032 * 155.00072 * 13 12 11 23 23 H 1.09000 * 109.46930 * 300.00443 * 14 13 12 24 24 H 1.09004 * 109.47071 * 59.99943 * 14 13 12 25 25 H 1.08997 * 109.46749 * 299.99359 * 15 14 13 26 26 H 1.09004 * 109.46551 * 180.02562 * 15 14 13 27 27 H 1.09001 * 109.46965 * 180.02562 * 16 15 14 28 28 H 1.08991 * 109.47461 * 59.99521 * 16 15 14 29 29 H 1.08997 * 109.47121 * 300.00990 * 17 16 15 30 30 H 1.08993 * 109.46710 * 180.02562 * 17 16 15 31 31 H 1.09000 * 109.47355 * 300.00172 * 18 13 12 32 32 H 1.09000 * 109.46854 * 59.99651 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0963 1.6963 -1.2125 5 1 1.2775 2.7464 -0.0006 6 1 3.0963 1.6965 1.2125 7 6 2.0080 -1.2113 0.0005 8 1 3.0879 -1.2113 0.0010 9 6 1.3010 -2.4358 0.0005 10 7 -0.0422 -2.5808 0.0005 11 6 -0.2945 -3.8639 0.0000 12 7 0.8851 -4.5172 0.0002 13 6 1.0561 -5.9722 0.0052 14 6 -0.0595 -6.6196 -0.8177 15 6 0.1187 -8.1392 -0.8119 16 6 0.0556 -8.6547 0.6272 17 6 1.1712 -8.0072 1.4502 18 6 0.9934 -6.4881 1.4442 19 7 1.8369 -3.6487 0.0003 20 1 -0.4850 0.8400 -0.0004 21 1 -1.2737 -4.3195 -0.0006 22 1 2.0227 -6.2259 -0.4299 23 1 -1.0261 -6.3658 -0.3826 24 1 -0.0149 -6.2521 -1.8430 25 1 1.0853 -8.3933 -1.2469 26 1 -0.6759 -8.6004 -1.3986 27 1 0.1830 -9.7372 0.6313 28 1 -0.9110 -8.4005 1.0621 29 1 2.1378 -8.2613 1.0152 30 1 1.1265 -8.3748 2.4753 31 1 1.7881 -6.0268 2.0306 32 1 0.0268 -6.2343 1.8794 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261135118.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:20 Heat of formation + Delta-G solvation = 65.274438 kcal Electronic energy + Delta-G solvation = -14947.883129 eV Core-core repulsion = 12523.371621 eV Total energy + Delta-G solvation = -2424.511508 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.17346 -38.20279 -33.59842 -32.20130 -30.83650 -29.93183 -28.55755 -25.54052 -22.83214 -22.47235 -20.86015 -19.87496 -19.16864 -17.06581 -15.93348 -15.02087 -14.84160 -14.53165 -14.14672 -13.91404 -13.55666 -12.84387 -12.49404 -12.29795 -12.17816 -11.36041 -11.18791 -11.14304 -11.03255 -10.69921 -10.44108 -10.29084 -10.19080 -10.02430 -9.69132 -9.17246 -8.33833 -8.06508 -7.63589 -6.24260 -4.17545 3.18875 3.26877 3.30475 3.50830 3.80428 4.23579 4.60185 4.66909 4.77176 4.93172 5.10918 5.23337 5.40573 5.46465 5.49268 5.61510 5.69747 5.81299 5.83320 5.98354 6.03515 6.06023 6.12127 6.20323 6.35024 6.43868 6.85406 7.35423 7.59449 8.30434 8.52132 8.68338 9.14342 9.23929 10.44008 10.73004 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.073895 B = 0.006215 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.827108 B = 4503.948826 C = 4642.210468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.080 3.920 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.446 4.446 8 H 0.081 0.919 9 C 0.334 3.666 10 N -0.480 5.480 11 C 0.139 3.861 12 N -0.340 5.340 13 C 0.167 3.833 14 C -0.127 4.127 15 C -0.113 4.113 16 C -0.122 4.122 17 C -0.115 4.115 18 C -0.128 4.128 19 N -0.444 5.444 20 H 0.269 0.731 21 H 0.179 0.821 22 H 0.089 0.911 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.559 -13.893 0.553 13.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.140 4.140 3 Si 0.736 3.264 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.488 4.488 8 H 0.099 0.901 9 C 0.074 3.926 10 N -0.207 5.207 11 C -0.158 4.158 12 N -0.135 5.135 13 C 0.063 3.937 14 C -0.166 4.166 15 C -0.152 4.152 16 C -0.159 4.159 17 C -0.153 4.153 18 C -0.167 4.167 19 N -0.282 5.282 20 H 0.079 0.921 21 H 0.196 0.804 22 H 0.107 0.893 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.328 -13.658 0.546 13.733 hybrid contribution 0.069 0.537 0.025 0.542 sum -1.259 -13.121 0.572 13.194 Atomic orbital electron populations 1.70027 1.06759 1.27385 1.35781 1.25734 0.94784 1.00316 0.93196 0.86358 0.79717 0.80808 0.79478 1.19339 1.20664 1.19338 1.18114 0.93458 0.86695 1.50525 0.90132 1.20907 0.86083 0.90943 0.94687 1.71940 1.16002 1.11201 1.21536 1.26195 0.92476 0.90447 1.06684 1.46811 1.04651 1.05489 1.56519 1.20925 1.00022 0.76732 0.96007 1.21874 0.98708 0.95370 1.00619 1.21483 1.02162 0.94623 0.96896 1.21583 0.99248 0.99587 0.95484 1.21495 0.98971 0.94708 1.00127 1.21936 1.02965 0.95345 0.96418 1.74637 1.15783 0.99434 1.38324 0.92066 0.80445 0.89287 0.91081 0.91117 0.91729 0.91532 0.91992 0.91817 0.91787 0.91736 0.91184 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.55 11.93 55.54 0.66 -21.89 16 2 C 0.08 2.26 5.49 -17.36 -0.10 2.17 16 3 Si 0.91 20.61 29.56 -169.99 -5.02 15.59 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.45 -13.42 9.50 -37.77 -0.36 -13.77 16 8 H 0.08 2.34 7.84 -52.49 -0.41 1.93 16 9 C 0.33 10.11 7.62 -157.66 -1.20 8.91 16 10 N -0.48 -13.99 9.61 -13.79 -0.13 -14.12 16 11 C 0.14 3.29 11.71 -90.34 -1.06 2.23 16 12 N -0.34 -7.77 3.24 -56.02 -0.18 -7.95 16 13 C 0.17 2.79 3.11 -67.93 -0.21 2.58 16 14 C -0.13 -1.68 4.84 -26.73 -0.13 -1.81 16 15 C -0.11 -1.14 5.92 -26.73 -0.16 -1.30 16 16 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 17 C -0.11 -1.23 5.92 -26.75 -0.16 -1.39 16 18 C -0.13 -1.86 5.52 -26.76 -0.15 -2.00 16 19 N -0.44 -12.31 12.17 30.88 0.38 -11.94 16 20 H 0.27 7.18 8.30 -40.82 -0.34 6.84 16 21 H 0.18 3.38 7.22 -52.49 -0.38 3.00 16 22 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 23 H 0.07 0.90 7.12 -51.93 -0.37 0.53 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 265.27 15.07 4.00 4.00 Total: -1.00 -34.09 265.27 -8.50 -42.59 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -4.52 Total: -0.59 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -3.68 Total: -5.69 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.72 Total: -55.90 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -34.09 -8.50 -42.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261135118.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.864 kcal (2) G-P(sol) polarization free energy of solvation -34.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds