Wall clock time and date at job start Mon Mar 30 2020 03:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30850 * 1 3 3 Si 1.86800 * 120.00106 * 2 1 4 4 H 1.48502 * 109.46883 * 239.99871 * 3 2 1 5 5 H 1.48500 * 109.46942 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47477 * 119.99710 * 3 2 1 7 7 C 1.39877 * 120.00321 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00400 * 180.02562 * 7 2 1 9 9 C 1.41396 * 119.99604 * 0.02562 * 7 2 1 10 10 N 1.35098 * 126.15831 * 359.97438 * 9 7 2 11 11 C 1.30773 * 107.27847 * 179.97438 * 10 9 7 12 12 N 1.34834 * 107.85682 * 0.02562 * 11 10 9 13 13 C 1.46502 * 125.67947 * 179.73662 * 12 11 10 14 14 C 1.53004 * 109.47222 * 34.99865 * 13 12 11 15 15 C 1.53002 * 109.47039 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47175 * 60.00299 * 15 14 13 17 17 C 1.53008 * 109.46885 * 299.99435 * 16 15 14 18 18 C 1.52998 * 109.47144 * 274.99875 * 13 12 11 19 19 N 1.28848 * 108.64413 * 359.97438 * 12 11 10 20 20 H 0.97002 * 120.00266 * 0.02562 * 1 2 3 21 21 H 1.07999 * 126.07307 * 180.02562 * 11 10 9 22 22 H 1.09002 * 109.47032 * 155.00072 * 13 12 11 23 23 H 1.09000 * 109.46930 * 300.00443 * 14 13 12 24 24 H 1.09004 * 109.47071 * 59.99943 * 14 13 12 25 25 H 1.08997 * 109.46749 * 299.99359 * 15 14 13 26 26 H 1.09004 * 109.46551 * 180.02562 * 15 14 13 27 27 H 1.09001 * 109.46965 * 180.02562 * 16 15 14 28 28 H 1.08991 * 109.47461 * 59.99521 * 16 15 14 29 29 H 1.08997 * 109.47121 * 300.00990 * 17 16 15 30 30 H 1.08993 * 109.46710 * 180.02562 * 17 16 15 31 31 H 1.09000 * 109.47355 * 300.00172 * 18 13 12 32 32 H 1.09000 * 109.46854 * 59.99651 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0963 1.6963 -1.2125 5 1 1.2775 2.7464 -0.0006 6 1 3.0963 1.6965 1.2125 7 6 2.0080 -1.2113 0.0005 8 1 3.0879 -1.2113 0.0010 9 6 1.3010 -2.4358 0.0005 10 7 -0.0422 -2.5808 0.0005 11 6 -0.2945 -3.8639 0.0000 12 7 0.8851 -4.5172 0.0002 13 6 1.0561 -5.9722 0.0052 14 6 -0.0595 -6.6196 -0.8177 15 6 0.1187 -8.1392 -0.8119 16 6 0.0556 -8.6547 0.6272 17 6 1.1712 -8.0072 1.4502 18 6 0.9934 -6.4881 1.4442 19 7 1.8369 -3.6487 0.0003 20 1 -0.4850 0.8400 -0.0004 21 1 -1.2737 -4.3195 -0.0006 22 1 2.0227 -6.2259 -0.4299 23 1 -1.0261 -6.3658 -0.3826 24 1 -0.0149 -6.2521 -1.8430 25 1 1.0853 -8.3933 -1.2469 26 1 -0.6759 -8.6004 -1.3986 27 1 0.1830 -9.7372 0.6313 28 1 -0.9110 -8.4005 1.0621 29 1 2.1378 -8.2613 1.0152 30 1 1.1265 -8.3748 2.4753 31 1 1.7881 -6.0268 2.0306 32 1 0.0268 -6.2343 1.8794 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261135118.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:20 Heat of formation + Delta-G solvation = 44.448625 kcal Electronic energy + Delta-G solvation = -14948.786204 eV Core-core repulsion = 12523.371621 eV Total energy + Delta-G solvation = -2425.414583 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.12460 -39.34795 -35.55454 -33.90145 -32.05299 -31.65132 -30.26285 -27.49249 -24.21027 -23.59523 -22.59718 -21.53570 -20.52877 -18.99236 -17.64023 -16.85172 -16.45245 -15.87713 -15.46360 -15.03070 -15.01005 -14.54448 -13.92324 -13.51088 -13.20505 -13.11716 -12.84217 -12.54371 -12.41438 -12.11306 -11.94914 -11.76534 -11.46436 -11.42960 -11.29658 -11.03052 -10.37414 -10.16881 -9.67556 -8.33181 -6.37937 1.35475 1.42629 1.56648 1.64084 2.18507 2.35692 2.51949 3.54550 3.59657 3.73386 3.91430 3.98518 4.14085 4.23219 4.28995 4.47828 4.50522 4.61306 4.75339 4.94552 5.02410 5.06194 5.16705 5.19455 5.28279 5.32247 5.36912 5.47590 5.52644 6.24446 6.48532 6.63515 7.01859 7.10394 8.36837 8.66079 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.073895 B = 0.006215 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.827108 B = 4503.948826 C = 4642.210468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.034 3.966 3 Si 0.995 3.005 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.262 1.262 7 C -0.489 4.489 8 H 0.074 0.926 9 C 0.298 3.702 10 N -0.531 5.531 11 C 0.147 3.853 12 N -0.331 5.331 13 C 0.154 3.846 14 C -0.120 4.120 15 C -0.108 4.108 16 C -0.118 4.118 17 C -0.108 4.108 18 C -0.121 4.121 19 N -0.464 5.464 20 H 0.276 0.724 21 H 0.225 0.775 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.041 0.959 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.121 -15.348 0.559 15.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.184 4.184 3 Si 0.815 3.185 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.531 4.531 8 H 0.092 0.908 9 C 0.037 3.963 10 N -0.258 5.258 11 C -0.149 4.149 12 N -0.125 5.125 13 C 0.053 3.947 14 C -0.159 4.159 15 C -0.145 4.145 16 C -0.155 4.155 17 C -0.146 4.146 18 C -0.160 4.160 19 N -0.303 5.303 20 H 0.086 0.914 21 H 0.241 0.759 22 H 0.100 0.900 23 H 0.098 0.902 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.107 0.893 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.889 -15.180 0.553 15.307 hybrid contribution 0.228 0.797 0.027 0.830 sum -1.661 -14.382 0.581 14.489 Atomic orbital electron populations 1.70135 1.08506 1.28905 1.35969 1.26725 0.95787 1.03948 0.91912 0.85101 0.78315 0.75313 0.79751 1.18595 1.18981 1.18614 1.18470 0.93525 0.88262 1.52837 0.90782 1.21284 0.87109 0.91824 0.96096 1.71810 1.15749 1.14221 1.24068 1.26809 0.94195 0.89446 1.04496 1.47215 1.03689 1.07319 1.54316 1.21512 1.01459 0.73393 0.98378 1.21884 0.97387 0.97556 0.99056 1.21494 1.03287 0.91771 0.97996 1.21588 0.98667 1.00864 0.94363 1.21490 1.00033 0.91399 1.01692 1.21884 1.01834 0.98184 0.94091 1.74513 1.17729 0.99710 1.38342 0.91372 0.75908 0.90003 0.90179 0.92251 0.91397 0.89257 0.89479 0.91286 0.91410 0.90155 0.94058 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.20 11.93 21.81 0.26 -47.94 16 2 C 0.03 1.92 5.49 85.24 0.47 2.39 16 3 Si 1.00 42.91 29.56 68.60 2.03 44.94 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 7 C -0.49 -30.62 9.50 23.44 0.22 -30.40 16 8 H 0.07 4.50 7.84 -2.91 -0.02 4.48 16 9 C 0.30 18.77 7.62 134.85 1.03 19.80 16 10 N -0.53 -31.76 9.61 -197.54 -1.90 -33.65 16 11 C 0.15 6.98 11.71 180.25 2.11 9.09 16 12 N -0.33 -15.32 3.24 -331.14 -1.07 -16.39 16 13 C 0.15 5.04 3.11 44.99 0.14 5.18 16 14 C -0.12 -2.91 4.84 30.60 0.15 -2.76 16 15 C -0.11 -1.77 5.92 30.59 0.18 -1.59 16 16 C -0.12 -1.73 5.92 30.60 0.18 -1.55 16 17 C -0.11 -2.03 5.92 30.58 0.18 -1.85 16 18 C -0.12 -3.40 5.52 30.58 0.17 -3.23 16 19 N -0.46 -26.63 12.17 -56.21 -0.68 -27.31 16 20 H 0.28 14.93 8.30 -92.71 -0.77 14.16 16 21 H 0.22 8.10 7.22 -2.91 -0.02 8.07 16 22 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 23 H 0.08 1.80 7.12 -2.39 -0.02 1.78 16 24 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -77.52 265.27 4.56 -72.96 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 1.10 Total: 12.31 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 4.83 Total: -4.92 kcal Atomic # 7 Polarization: -121.90 SS G_CDS: -3.39 Total: -125.29 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -77.52 4.56 -72.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261135118.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.414 kcal (2) G-P(sol) polarization free energy of solvation -77.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds