Wall clock time and date at job start Mon Mar 30 2020 03:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00461 * 2 1 4 4 H 1.48502 * 109.46742 * 270.00192 * 3 2 1 5 5 H 1.48504 * 109.46822 * 29.99665 * 3 2 1 6 6 H 1.48495 * 109.47186 * 149.99941 * 3 2 1 7 7 C 1.37879 * 119.99535 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00050 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00379 * 359.97438 * 7 2 1 10 10 C 1.53123 * 109.52570 * 180.02562 * 9 7 2 11 11 C 1.53036 * 109.27788 * 177.56259 * 10 9 7 12 12 N 1.46842 * 109.52190 * 300.81892 * 11 10 9 13 13 C 1.38500 * 110.99927 * 185.84251 * 12 11 10 14 14 N 1.31202 * 125.79000 * 359.69263 * 13 12 11 15 15 C 1.34381 * 109.30442 * 179.83590 * 14 13 12 16 16 C 1.34379 * 108.32031 * 0.43021 * 15 14 13 17 17 N 1.36025 * 125.79078 * 179.97438 * 13 12 11 18 18 H 0.97002 * 126.49815 * 359.97438 * 17 13 12 19 19 C 1.46848 * 111.20069 * 61.74451 * 12 11 10 20 20 C 1.53032 * 109.52348 * 298.25721 * 19 12 11 21 21 H 0.97004 * 119.99991 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.57244 * 59.84439 * 9 7 2 23 23 H 1.09000 * 109.50367 * 57.61804 * 10 9 7 24 24 H 1.09006 * 109.50264 * 297.50143 * 10 9 7 25 25 H 1.09002 * 109.46126 * 60.83950 * 11 10 9 26 26 H 1.09000 * 109.45809 * 180.80452 * 11 10 9 27 27 H 1.08005 * 125.84477 * 180.17016 * 15 14 13 28 28 H 1.08001 * 126.53257 * 179.74226 * 16 15 14 29 29 H 1.09003 * 109.46014 * 58.27448 * 19 12 11 30 30 H 1.08995 * 109.46374 * 178.23478 * 19 12 11 31 31 H 1.08996 * 109.50421 * 179.11872 * 20 19 12 32 32 H 1.08997 * 109.50237 * 299.24201 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2448 -3.6640 -0.0005 11 6 1.4749 -4.9852 0.0609 12 7 0.6541 -5.0186 1.2780 13 6 0.0448 -6.2528 1.4320 14 7 0.1602 -7.2728 0.6148 15 6 -0.5661 -8.3018 1.0833 16 6 -1.1624 -7.9135 2.2232 17 7 -0.7791 -6.6114 2.4532 18 1 -1.0459 -6.0552 3.2018 19 6 -0.3396 -3.9374 1.2784 20 6 0.3761 -2.5850 1.2532 21 1 -0.4850 0.8401 -0.0004 22 1 0.6211 -2.5572 -0.8884 23 1 2.8996 -3.5837 0.8672 24 1 2.8420 -3.6329 -0.9119 25 1 0.8307 -5.0711 -0.8142 26 1 2.1802 -5.8161 0.0755 27 1 -0.6586 -9.2732 0.6204 28 1 -1.8174 -8.5095 2.8415 29 1 -0.9754 -4.0283 0.3976 30 1 -0.9523 -4.0076 2.1771 31 1 -0.3619 -1.7830 1.2377 32 1 1.0015 -2.4878 2.1406 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261138295.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:38 Heat of formation + Delta-G solvation = 59.856673 kcal Electronic energy + Delta-G solvation = -15075.019300 eV Core-core repulsion = 12650.272860 eV Total energy + Delta-G solvation = -2424.746440 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.70213 -38.09788 -33.91316 -32.30381 -31.36624 -29.88534 -28.10006 -25.59302 -22.54643 -22.44511 -20.94475 -20.15479 -18.67242 -18.19522 -16.35916 -15.28081 -14.95728 -14.56548 -14.39953 -13.52168 -13.45032 -13.25779 -12.76691 -12.52120 -12.28272 -11.53554 -11.09644 -10.92363 -10.54692 -10.30242 -10.12732 -9.84471 -9.78810 -9.63455 -9.20897 -8.99352 -8.76544 -8.34327 -7.47511 -6.01384 -4.06418 2.25737 3.06712 3.30153 3.34915 3.37007 3.40610 4.32875 4.43299 5.05828 5.29028 5.36915 5.60122 5.63113 5.82015 6.00110 6.05569 6.16158 6.28983 6.35040 6.55821 6.71293 6.80188 6.88419 7.03336 7.18915 7.33312 7.39271 7.71151 7.91249 7.98580 8.06044 8.37477 8.43100 8.97268 9.58456 11.05260 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.071711 B = 0.006442 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.362008 B = 4345.178630 C = 4574.122682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.509 4.509 8 H 0.056 0.944 9 C 0.045 3.955 10 C -0.110 4.110 11 C 0.081 3.919 12 N -0.457 5.457 13 C 0.409 3.591 14 N -0.526 5.526 15 C -0.016 4.016 16 C -0.076 4.076 17 N -0.580 5.580 18 H 0.417 0.583 19 C 0.060 3.940 20 C -0.105 4.105 21 H 0.260 0.740 22 H 0.025 0.975 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.165 0.835 28 H 0.173 0.827 29 H 0.039 0.961 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.893 -10.927 4.680 12.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.547 4.547 8 H 0.075 0.925 9 C 0.027 3.973 10 C -0.148 4.148 11 C -0.045 4.045 12 N -0.180 5.180 13 C 0.055 3.945 14 N -0.252 5.252 15 C -0.163 4.163 16 C -0.209 4.209 17 N -0.188 5.188 18 H 0.255 0.745 19 C -0.066 4.066 20 C -0.143 4.143 21 H 0.070 0.930 22 H 0.043 0.957 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.183 0.817 28 H 0.190 0.810 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.259 -10.741 4.321 11.795 hybrid contribution -0.738 0.958 0.658 1.376 sum -2.997 -9.783 4.978 11.378 Atomic orbital electron populations 1.69858 1.05911 1.26420 1.51115 1.24973 0.94850 0.99091 0.95116 0.86606 0.79899 0.83489 0.78084 1.20732 1.21324 1.19915 1.21193 0.92983 0.90466 1.50104 0.92548 1.18731 0.92773 0.92014 0.93832 1.21788 0.98808 0.93271 1.00974 1.22040 0.95411 0.99704 0.87382 1.58876 1.21289 0.97619 1.40237 1.21588 0.92628 0.93898 0.86406 1.70739 1.26551 1.00664 1.27265 1.22137 0.99512 0.98963 0.95735 1.22491 1.08977 0.86120 1.03270 1.43258 1.39814 1.13034 1.22731 0.74506 1.22472 0.92452 0.92252 0.99462 1.21744 1.00500 0.92031 1.00031 0.93037 0.95702 0.92303 0.92198 0.93861 0.90856 0.81725 0.81005 0.94299 0.92730 0.88219 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.93 11.37 55.43 0.63 -24.30 16 2 C 0.06 1.64 5.31 -17.82 -0.09 1.54 16 3 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.51 -13.70 8.56 -34.44 -0.29 -13.99 16 8 H 0.06 1.50 7.75 -52.48 -0.41 1.10 16 9 C 0.05 1.10 2.16 -91.65 -0.20 0.90 16 10 C -0.11 -2.31 5.32 -26.65 -0.14 -2.46 16 11 C 0.08 1.57 4.85 -3.84 -0.02 1.55 16 12 N -0.46 -8.60 4.72 -174.72 -0.82 -9.42 16 13 C 0.41 7.20 7.35 -319.60 -2.35 4.85 16 14 N -0.53 -9.49 10.23 -13.92 -0.14 -9.63 16 15 C -0.02 -0.22 11.84 -17.80 -0.21 -0.44 16 16 C -0.08 -0.93 12.04 -16.29 -0.20 -1.13 16 17 N -0.58 -8.06 6.00 -13.15 -0.08 -8.14 16 18 H 0.42 4.73 8.64 -40.82 -0.35 4.38 16 19 C 0.06 1.15 5.38 -3.84 -0.02 1.13 16 20 C -0.10 -2.38 5.12 -26.65 -0.14 -2.51 16 21 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 22 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 24 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 1.37 7.90 -51.93 -0.41 0.96 16 27 H 0.17 1.85 8.06 -52.48 -0.42 1.43 16 28 H 0.17 1.40 8.06 -52.49 -0.42 0.97 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.91 7.60 -51.93 -0.39 0.52 16 31 H 0.10 2.50 6.17 -51.93 -0.32 2.18 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 262.46 15.07 3.96 3.96 Total: -1.00 -29.64 262.46 -9.54 -39.19 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -4.40 Total: 2.95 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -3.66 Total: -10.55 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.42 Total: -51.49 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.64 -9.54 -39.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138295.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.042 kcal (2) G-P(sol) polarization free energy of solvation -29.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds