Wall clock time and date at job start Mon Mar 30 2020 03:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00461 * 2 1 4 4 H 1.48502 * 109.46742 * 270.00192 * 3 2 1 5 5 H 1.48504 * 109.46822 * 29.99665 * 3 2 1 6 6 H 1.48495 * 109.47186 * 149.99941 * 3 2 1 7 7 C 1.37879 * 119.99535 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00050 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00379 * 359.97438 * 7 2 1 10 10 C 1.53123 * 109.52570 * 180.02562 * 9 7 2 11 11 C 1.53036 * 109.27788 * 177.56259 * 10 9 7 12 12 N 1.46842 * 109.52190 * 300.81892 * 11 10 9 13 13 C 1.38500 * 110.99927 * 185.84251 * 12 11 10 14 14 N 1.31202 * 125.79000 * 359.69263 * 13 12 11 15 15 C 1.34381 * 109.30442 * 179.83590 * 14 13 12 16 16 C 1.34379 * 108.32031 * 0.43021 * 15 14 13 17 17 N 1.36025 * 125.79078 * 179.97438 * 13 12 11 18 18 H 0.97002 * 126.49815 * 359.97438 * 17 13 12 19 19 C 1.46848 * 111.20069 * 61.74451 * 12 11 10 20 20 C 1.53032 * 109.52348 * 298.25721 * 19 12 11 21 21 H 0.97004 * 119.99991 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.57244 * 59.84439 * 9 7 2 23 23 H 1.09000 * 109.50367 * 57.61804 * 10 9 7 24 24 H 1.09006 * 109.50264 * 297.50143 * 10 9 7 25 25 H 1.09002 * 109.46126 * 60.83950 * 11 10 9 26 26 H 1.09000 * 109.45809 * 180.80452 * 11 10 9 27 27 H 1.08005 * 125.84477 * 180.17016 * 15 14 13 28 28 H 1.08001 * 126.53257 * 179.74226 * 16 15 14 29 29 H 1.09003 * 109.46014 * 58.27448 * 19 12 11 30 30 H 1.08995 * 109.46374 * 178.23478 * 19 12 11 31 31 H 1.08996 * 109.50421 * 179.11872 * 20 19 12 32 32 H 1.08997 * 109.50237 * 299.24201 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2448 -3.6640 -0.0005 11 6 1.4749 -4.9852 0.0609 12 7 0.6541 -5.0186 1.2780 13 6 0.0448 -6.2528 1.4320 14 7 0.1602 -7.2728 0.6148 15 6 -0.5661 -8.3018 1.0833 16 6 -1.1624 -7.9135 2.2232 17 7 -0.7791 -6.6114 2.4532 18 1 -1.0459 -6.0552 3.2018 19 6 -0.3396 -3.9374 1.2784 20 6 0.3761 -2.5850 1.2532 21 1 -0.4850 0.8401 -0.0004 22 1 0.6211 -2.5572 -0.8884 23 1 2.8996 -3.5837 0.8672 24 1 2.8420 -3.6329 -0.9119 25 1 0.8307 -5.0711 -0.8142 26 1 2.1802 -5.8161 0.0755 27 1 -0.6586 -9.2732 0.6204 28 1 -1.8174 -8.5095 2.8415 29 1 -0.9754 -4.0283 0.3976 30 1 -0.9523 -4.0076 2.1771 31 1 -0.3619 -1.7830 1.2377 32 1 1.0015 -2.4878 2.1406 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261138295.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:37 Heat of formation + Delta-G solvation = 42.299365 kcal Electronic energy + Delta-G solvation = -15075.780642 eV Core-core repulsion = 12650.272860 eV Total energy + Delta-G solvation = -2425.507782 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.87760 -39.67812 -35.73850 -33.51373 -33.21230 -31.52397 -29.44167 -27.39335 -24.24038 -24.05471 -22.15316 -21.52039 -20.35614 -19.45332 -18.38554 -16.78909 -16.37169 -16.25989 -15.78622 -15.04233 -14.76429 -14.56088 -14.40165 -14.28036 -13.93792 -13.20693 -12.93797 -12.78599 -12.35712 -12.11075 -11.99648 -11.50873 -11.06339 -10.98804 -10.89986 -10.74035 -10.49068 -10.39664 -8.71482 -8.08191 -6.20756 1.12322 1.43380 1.44611 1.54547 1.90334 2.19432 2.45422 3.05754 3.19980 3.83832 4.12448 4.20026 4.31648 4.42098 4.51962 4.61609 4.62787 4.74322 4.91017 5.00051 5.06172 5.17640 5.24843 5.45445 5.56945 5.62231 5.73914 5.98398 6.07145 6.15806 6.38856 6.72771 6.89694 7.19835 7.47244 8.97114 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.071711 B = 0.006442 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.362008 B = 4345.178630 C = 4574.122682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.014 3.986 3 Si 0.954 3.046 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.531 4.531 8 H 0.053 0.947 9 C 0.041 3.959 10 C -0.100 4.100 11 C 0.094 3.906 12 N -0.458 5.458 13 C 0.372 3.628 14 N -0.555 5.555 15 C -0.048 4.048 16 C -0.042 4.042 17 N -0.569 5.569 18 H 0.430 0.570 19 C 0.073 3.927 20 C -0.094 4.094 21 H 0.261 0.739 22 H -0.009 1.009 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.029 0.971 26 H 0.082 0.918 27 H 0.190 0.810 28 H 0.222 0.778 29 H 0.022 0.978 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.228 -12.140 5.997 13.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.184 4.184 3 Si 0.780 3.220 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.569 4.569 8 H 0.072 0.928 9 C 0.022 3.978 10 C -0.138 4.138 11 C -0.034 4.034 12 N -0.182 5.182 13 C 0.018 3.982 14 N -0.282 5.282 15 C -0.194 4.194 16 C -0.175 4.175 17 N -0.178 5.178 18 H 0.270 0.730 19 C -0.054 4.054 20 C -0.132 4.132 21 H 0.070 0.930 22 H 0.009 0.991 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.047 0.953 26 H 0.100 0.900 27 H 0.207 0.793 28 H 0.238 0.762 29 H 0.041 0.959 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.595 -11.965 5.654 13.485 hybrid contribution -0.701 1.218 0.250 1.427 sum -3.296 -10.747 5.904 12.697 Atomic orbital electron populations 1.69990 1.07119 1.27146 1.51557 1.25713 0.95666 1.02272 0.94791 0.85623 0.78805 0.79518 0.78103 1.20398 1.20894 1.19305 1.21538 0.93111 0.91899 1.50320 0.92826 1.18705 0.93185 0.92660 0.93202 1.21633 0.98115 0.92939 1.01126 1.21816 0.95303 0.98703 0.87529 1.58806 1.21309 0.98408 1.39636 1.21385 0.95238 0.93368 0.88221 1.70629 1.27397 1.01779 1.28375 1.22701 1.00106 0.99473 0.97140 1.23291 1.06917 0.85033 1.02263 1.43312 1.38543 1.13826 1.22158 0.72997 1.22235 0.92205 0.90839 1.00122 1.21465 0.99551 0.93469 0.98744 0.93009 0.99064 0.92309 0.91838 0.95285 0.90009 0.79299 0.76179 0.95914 0.89823 0.90892 0.93932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.28 11.37 21.45 0.24 -52.04 16 2 C 0.01 0.77 5.31 84.66 0.45 1.22 16 3 Si 0.95 43.27 29.54 68.60 2.03 45.30 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.53 -29.11 8.56 25.60 0.22 -28.89 16 8 H 0.05 2.89 7.75 -2.91 -0.02 2.87 16 9 C 0.04 2.06 2.16 -11.46 -0.02 2.04 16 10 C -0.10 -4.27 5.32 30.65 0.16 -4.10 16 11 C 0.09 3.65 4.85 86.33 0.42 4.07 16 12 N -0.46 -17.01 4.72 -706.69 -3.33 -20.35 16 13 C 0.37 12.53 7.35 260.37 1.91 14.45 16 14 N -0.56 -19.27 10.23 -197.94 -2.03 -21.29 16 15 C -0.05 -1.23 11.84 83.42 0.99 -0.25 16 16 C -0.04 -0.86 12.04 82.89 1.00 0.14 16 17 N -0.57 -14.09 6.00 -195.53 -1.17 -15.26 16 18 H 0.43 8.30 8.64 -92.71 -0.80 7.50 16 19 C 0.07 2.79 5.38 86.32 0.46 3.25 16 20 C -0.09 -4.35 5.12 30.65 0.16 -4.19 16 21 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 22 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 23 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 24 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 25 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.08 3.04 7.90 -2.39 -0.02 3.02 16 27 H 0.19 3.69 8.06 -2.91 -0.02 3.66 16 28 H 0.22 2.22 8.06 -2.91 -0.02 2.20 16 29 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 2.68 7.60 -2.39 -0.02 2.66 16 31 H 0.07 3.78 6.17 -2.39 -0.01 3.76 16 32 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -64.82 262.46 1.80 -63.02 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.31 Total: 12.89 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 5.75 Total: -12.27 kcal Atomic # 7 Polarization: -102.65 SS G_CDS: -6.29 Total: -108.94 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -64.82 1.80 -63.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138295.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.323 kcal (2) G-P(sol) polarization free energy of solvation -64.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds